RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SMCR5Q8TEV8 140 aa6.42□□□□□ -1.38
LIG3-214ENST00000592244 TIMM17BO60830 172 aa6.41□□□□□ -1.38
LIG3-214ENST00000592244 TRAV23DV6A0A075B6W5 121 aa6.4□□□□□ -1.38
LIG3-214ENST00000592244 B5MCH6 92 aa6.4□□□□□ -1.38
LIG3-214ENST00000592244 KRTAP4-16G5E9R7 235 aaPredicted RBP6.4□□□□□ -1.38
LIG3-214ENST00000592244 COPS9Q8WXC6 57 aa6.4□□□□□ -1.38
LIG3-214ENST00000592244 ZNF815PA8K554 130 aa6.39□□□□□ -1.39
LIG3-214ENST00000592244 IGLV6-57P01721 117 aa6.39□□□□□ -1.39
LIG3-214ENST00000592244 KRTDAPP60985 99 aa6.39□□□□□ -1.39
LIG3-214ENST00000592244 COA6Q5JTJ3 125 aaKnown RBP6.39□□□□□ -1.39
LIG3-214ENST00000592244 Q6ZRX8 168 aa6.39□□□□□ -1.39
LIG3-214ENST00000592244 SPANXCQ9NY87 97 aa6.39□□□□□ -1.39
LIG3-214ENST00000592244 C3orf79P0CE67 100 aa6.38□□□□□ -1.39
LIG3-214ENST00000592244 NPC2P61916 151 aa6.38□□□□□ -1.39
LIG3-214ENST00000592244 GAGE2AQ6NT46 116 aa6.38□□□□□ -1.39
LIG3-214ENST00000592244 C3orf22Q8N5N4 141 aa6.38□□□□□ -1.39
LIG3-214ENST00000592244 ZNF73O43830 326 aaPredicted RBP6.37□□□□□ -1.39
LIG3-214ENST00000592244 LINC00483Q53H64 154 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 ADAMTSL4-AS1Q5T5F5 129 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 SCGB1D4Q6XE38 83 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 LINC00518Q8N0U6 118 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 OR13C6PQ8NH95 151 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 LINC00308Q8TCZ7 52 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 PPDPFQ9H3Y8 114 aa6.37□□□□□ -1.39
LIG3-214ENST00000592244 RNF213Q63HN8 5207 aa6.36□□□□□ -1.39
LIG3-214ENST00000592244 C5orf52A6NGY3 159 aa6.36□□□□□ -1.39
LIG3-214ENST00000592244 SPINK1P00995 79 aa6.35□□□□□ -1.39
LIG3-214ENST00000592244 SOSTDC1Q6X4U4 206 aa6.35□□□□□ -1.39
LIG3-214ENST00000592244 Q8NBF4 154 aa6.35□□□□□ -1.39
LIG3-214ENST00000592244 SPANXDQ9BXN6 97 aa6.35□□□□□ -1.39
LIG3-214ENST00000592244 IGLV7-46A0A075B6I9 117 aa6.34□□□□□ -1.39
LIG3-214ENST00000592244 SNRPEP62304 92 aaKnown RBP6.34□□□□□ -1.39
LIG3-214ENST00000592244 SLC25A34Q6PIV7 304 aa6.34□□□□□ -1.39
LIG3-214ENST00000592244 SSBP3-AS1Q7Z2R9 100 aa6.34□□□□□ -1.39
LIG3-214ENST00000592244 RETNLBQ9BQ08 111 aa6.34□□□□□ -1.39
LIG3-214ENST00000592244 CDIP1Q9H305 208 aa6.34□□□□□ -1.39
LIG3-214ENST00000592244 IGLV9-49A0A0B4J1Y8 123 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 A0A0U1RQV1 116 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 TPRXLQ17RH7 258 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 Q6ZVH6 145 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 FP248Q71RG6 208 aaPredicted RBP6.33□□□□□ -1.4
LIG3-214ENST00000592244 LITAFQ99732 161 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 Q9BRP9 147 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 DHRS4-AS1Q9P1J3 65 aa6.33□□□□□ -1.4
LIG3-214ENST00000592244 ERC2-IT1O76042 136 aa6.32□□□□□ -1.4
LIG3-214ENST00000592244 IFITM1P13164 125 aa6.32□□□□□ -1.4
LIG3-214ENST00000592244 S100A2P29034 98 aa6.32□□□□□ -1.4
LIG3-214ENST00000592244 MOBPQ13875 183 aa6.32□□□□□ -1.4
LIG3-214ENST00000592244 LPAP08519 4548 aa6.3□□□□□ -1.4
LIG3-214ENST00000592244 HSBP1L1C9JCN9 74 aa6.3□□□□□ -1.4
LIG3-214ENST00000592244 RPS29P62273 56 aaKnown RBP6.3□□□□□ -1.4
LIG3-214ENST00000592244 C9orf153Q5TBE3 101 aa6.3□□□□□ -1.4
LIG3-214ENST00000592244 S100A6P06703 90 aa6.29□□□□□ -1.4
LIG3-214ENST00000592244 COX7BP24311 80 aa6.29□□□□□ -1.4
LIG3-214ENST00000592244 TTTY13Q9BZ97 58 aa6.29□□□□□ -1.4
LIG3-214ENST00000592244 ATOH7Q8N100 152 aa6.28□□□□□ -1.4
LIG3-214ENST00000592244 TRAV13-2A0A0B4J235 113 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 TRBV7-6A0A0J9YX20 115 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 A6NDN8 102 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 SLC25A20O43772 301 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 C6orf99Q4VX62 202 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 LAMTOR3Q9UHA4 124 aa6.27□□□□□ -1.41
LIG3-214ENST00000592244 ELOF1P60002 83 aaKnown RBP6.26□□□□□ -1.41
LIG3-214ENST00000592244 TAL2Q16559 108 aa6.26□□□□□ -1.41
LIG3-214ENST00000592244 A0A1B0GWB2 263 aa6.25□□□□□ -1.41
LIG3-214ENST00000592244 A4D1N5 150 aa6.25□□□□□ -1.41
LIG3-214ENST00000592244 HIST3H2BBQ8N257 126 aa6.25□□□□□ -1.41
LIG3-214ENST00000592244 ST20-AS1Q8NBB2 130 aa6.25□□□□□ -1.41
LIG3-214ENST00000592244 NHP2Q9NX24 153 aaKnown RBP6.25□□□□□ -1.41
LIG3-214ENST00000592244 SPRR1BP22528 89 aa6.24□□□□□ -1.41
LIG3-214ENST00000592244 PCP2Q8IVA1 136 aa6.24□□□□□ -1.41
LIG3-214ENST00000592244 MUSTN1Q8IVN3 82 aa6.24□□□□□ -1.41
LIG3-214ENST00000592244 HIST1H2BLQ99880 126 aa6.24□□□□□ -1.41
LIG3-214ENST00000592244 TEX49A0A1B0GTD5 131 aa6.23□□□□□ -1.41
LIG3-214ENST00000592244 VAMP3Q15836 100 aa6.23□□□□□ -1.41
LIG3-214ENST00000592244 LIMD2Q9BT23 127 aa6.23□□□□□ -1.41
LIG3-214ENST00000592244 Q8N377 158 aa6.22□□□□□ -1.41
LIG3-214ENST00000592244 DEFB105AQ8NG35 78 aa6.21□□□□□ -1.42
LIG3-214ENST00000592244 H3BS24 57 aa6.2□□□□□ -1.42
LIG3-214ENST00000592244 PRO1933Q9H354 126 aa6.2□□□□□ -1.42
LIG3-214ENST00000592244 SCGB1D1O95968 90 aa6.19□□□□□ -1.42
LIG3-214ENST00000592244 KRTAP13-3Q3SY46 172 aa6.19□□□□□ -1.42
LIG3-214ENST00000592244 CD164Q04900 197 aa6.18□□□□□ -1.42
LIG3-214ENST00000592244 Q1RN00 199 aa6.18□□□□□ -1.42
LIG3-214ENST00000592244 H7C2G1 150 aa6.17□□□□□ -1.42
LIG3-214ENST00000592244 SEC61BP60468 96 aaKnown RBP6.17□□□□□ -1.42
LIG3-214ENST00000592244 SMIM11BQ8TCY0 68 aa6.17□□□□□ -1.42
LIG3-214ENST00000592244 MUC2Q02817 5179 aa6.16□□□□□ -1.42
LIG3-214ENST00000592244 IGLV5-48A0A075B6I7 105 aa6.16□□□□□ -1.42
LIG3-214ENST00000592244 F8WEM9 126 aa6.16□□□□□ -1.42
LIG3-214ENST00000592244 HRCT1Q6UXD1 115 aa6.16□□□□□ -1.42
LIG3-214ENST00000592244 HIST1H4GQ99525 98 aa6.16□□□□□ -1.42
LIG3-214ENST00000592244 SNCGO76070 127 aa6.13□□□□□ -1.43
LIG3-214ENST00000592244 COX8AP10176 69 aa6.13□□□□□ -1.43
LIG3-214ENST00000592244 ASB16-AS1Q495Z4 193 aa6.13□□□□□ -1.43
LIG3-214ENST00000592244 BVES-AS1Q5T3Y7 98 aa6.13□□□□□ -1.43
LIG3-214ENST00000592244 hADV29S1A0JD25 119 aa6.12□□□□□ -1.43
LIG3-214ENST00000592244 DLEU1O43261 78 aa6.12□□□□□ -1.43
LIG3-214ENST00000592244 Q5XG85 94 aa6.11□□□□□ -1.43
LIG3-214ENST00000592244 LINC00575Q6W349 94 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms