RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ZNF73O43830 326 aaPredicted RBP6.42□□□□□ -1.38
CLIP3-203ENST00000586457 IGLV6-57P01721 117 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 SOSTDC1Q6X4U4 206 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 HIST3H2BBQ8N257 126 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 LINC00304Q8N9R0 145 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 SPRR4Q96PI1 79 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 TTTY13Q9BZ97 58 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 PPDPFQ9H3Y8 114 aa6.42□□□□□ -1.38
CLIP3-203ENST00000586457 SCGB1D1O95968 90 aa6.41□□□□□ -1.38
CLIP3-203ENST00000586457 ANKRD39Q53RE8 183 aa6.41□□□□□ -1.38
CLIP3-203ENST00000586457 GAGE2AQ6NT46 116 aa6.41□□□□□ -1.38
CLIP3-203ENST00000586457 Q6ZVH6 145 aa6.41□□□□□ -1.38
CLIP3-203ENST00000586457 HIST1H2BLQ99880 126 aa6.41□□□□□ -1.38
CLIP3-203ENST00000586457 IFITM1P13164 125 aa6.4□□□□□ -1.38
CLIP3-203ENST00000586457 Q6ZRX8 168 aa6.4□□□□□ -1.38
CLIP3-203ENST00000586457 LITAFQ99732 161 aa6.4□□□□□ -1.38
CLIP3-203ENST00000586457 SPANXDQ9BXN6 97 aa6.4□□□□□ -1.38
CLIP3-203ENST00000586457 TNXBP22105 4242 aa6.4□□□□□ -1.39
CLIP3-203ENST00000586457 A6NDN8 102 aa6.39□□□□□ -1.39
CLIP3-203ENST00000586457 KRTAP4-16G5E9R7 235 aaPredicted RBP6.39□□□□□ -1.39
CLIP3-203ENST00000586457 EIF4EBP3O60516 100 aaPredicted RBP6.39□□□□□ -1.39
CLIP3-203ENST00000586457 KRTAP13-2Q52LG2 175 aa6.39□□□□□ -1.39
CLIP3-203ENST00000586457 SPAG11AQ6PDA7 123 aa6.39□□□□□ -1.39
CLIP3-203ENST00000586457 PCP2Q8IVA1 136 aa6.38□□□□□ -1.39
CLIP3-203ENST00000586457 C3orf22Q8N5N4 141 aa6.37□□□□□ -1.39
CLIP3-203ENST00000586457 DHRS4-AS1Q9P1J3 65 aa6.37□□□□□ -1.39
CLIP3-203ENST00000586457 IGLV9-49A0A0B4J1Y8 123 aa6.36□□□□□ -1.39
CLIP3-203ENST00000586457 MUSTN1Q8IVN3 82 aa6.36□□□□□ -1.39
CLIP3-203ENST00000586457 COX7BP24311 80 aa6.35□□□□□ -1.39
CLIP3-203ENST00000586457 CTAG1AP78358 180 aa6.35□□□□□ -1.39
CLIP3-203ENST00000586457 SLC25A34Q6PIV7 304 aa6.35□□□□□ -1.39
CLIP3-203ENST00000586457 Q9BRP9 147 aa6.35□□□□□ -1.39
CLIP3-203ENST00000586457 HMCN2Q8NDA2 5059 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 TRAV13-2A0A0B4J235 113 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 C5orf52A6NGY3 159 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 ERC2-IT1O76042 136 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 C6orf99Q4VX62 202 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 C9orf153Q5TBE3 101 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 Q8NBF4 154 aa6.34□□□□□ -1.39
CLIP3-203ENST00000586457 MOBPQ13875 183 aa6.33□□□□□ -1.4
CLIP3-203ENST00000586457 VAMP3Q15836 100 aa6.33□□□□□ -1.4
CLIP3-203ENST00000586457 TAL2Q16559 108 aa6.33□□□□□ -1.4
CLIP3-203ENST00000586457 LINC00483Q53H64 154 aa6.33□□□□□ -1.4
CLIP3-203ENST00000586457 SSBP3-AS1Q7Z2R9 100 aa6.33□□□□□ -1.4
CLIP3-203ENST00000586457 RETNLBQ9BQ08 111 aa6.32□□□□□ -1.4
CLIP3-203ENST00000586457 TRBV7-6A0A0J9YX20 115 aa6.31□□□□□ -1.4
CLIP3-203ENST00000586457 SPINK1P00995 79 aa6.31□□□□□ -1.4
CLIP3-203ENST00000586457 DEFB105AQ8NG35 78 aa6.31□□□□□ -1.4
CLIP3-203ENST00000586457 HIST1H4GQ99525 98 aa6.31□□□□□ -1.4
CLIP3-203ENST00000586457 LAMTOR3Q9UHA4 124 aa6.31□□□□□ -1.4
CLIP3-203ENST00000586457 A0A1B0GWB2 263 aa6.3□□□□□ -1.4
CLIP3-203ENST00000586457 A4D1N5 150 aa6.3□□□□□ -1.4
CLIP3-203ENST00000586457 SLC25A20O43772 301 aa6.3□□□□□ -1.4
CLIP3-203ENST00000586457 ELOF1P60002 83 aaKnown RBP6.3□□□□□ -1.4
CLIP3-203ENST00000586457 ST20-AS1Q8NBB2 130 aa6.3□□□□□ -1.4
CLIP3-203ENST00000586457 NHP2Q9NX24 153 aaKnown RBP6.3□□□□□ -1.4
CLIP3-203ENST00000586457 IGLV7-46A0A075B6I9 117 aa6.28□□□□□ -1.4
CLIP3-203ENST00000586457 CDIP1Q9H305 208 aa6.28□□□□□ -1.4
CLIP3-203ENST00000586457 TEX49A0A1B0GTD5 131 aa6.27□□□□□ -1.41
CLIP3-203ENST00000586457 COX8AP10176 69 aa6.27□□□□□ -1.41
CLIP3-203ENST00000586457 VAMP8Q9BV40 100 aa6.27□□□□□ -1.41
CLIP3-203ENST00000586457 SMIM11BQ8TCY0 68 aa6.26□□□□□ -1.41
CLIP3-203ENST00000586457 PAM16Q9Y3D7 125 aa6.26□□□□□ -1.41
CLIP3-203ENST00000586457 UBR4Q5T4S7 5183 aa6.26□□□□□ -1.41
CLIP3-203ENST00000586457 SNCGO76070 127 aa6.25□□□□□ -1.41
CLIP3-203ENST00000586457 SPATA45Q537H7 98 aa6.25□□□□□ -1.41
CLIP3-203ENST00000586457 C14orf144Q96I85 54 aa6.25□□□□□ -1.41
CLIP3-203ENST00000586457 DLEU1O43261 78 aa6.24□□□□□ -1.41
CLIP3-203ENST00000586457 Q1RN00 199 aa6.24□□□□□ -1.41
CLIP3-203ENST00000586457 FP248Q71RG6 208 aaPredicted RBP6.24□□□□□ -1.41
CLIP3-203ENST00000586457 RAB37Q96AX2 223 aa6.24□□□□□ -1.41
CLIP3-203ENST00000586457 SPRR1BP22528 89 aa6.23□□□□□ -1.41
CLIP3-203ENST00000586457 C12orf57Q99622 126 aa6.23□□□□□ -1.41
CLIP3-203ENST00000586457 F8WEM9 126 aa6.22□□□□□ -1.41
CLIP3-203ENST00000586457 RPS29P62273 56 aaKnown RBP6.22□□□□□ -1.41
CLIP3-203ENST00000586457 HRCT1Q6UXD1 115 aa6.22□□□□□ -1.41
CLIP3-203ENST00000586457 LIMD2Q9BT23 127 aa6.22□□□□□ -1.41
CLIP3-203ENST00000586457 PRO1933Q9H354 126 aa6.22□□□□□ -1.41
CLIP3-203ENST00000586457 H7C2G1 150 aa6.21□□□□□ -1.42
CLIP3-203ENST00000586457 TPRXLQ17RH7 258 aa6.21□□□□□ -1.42
CLIP3-203ENST00000586457 BVES-AS1Q5T3Y7 98 aa6.21□□□□□ -1.42
CLIP3-203ENST00000586457 hADV29S1A0JD25 119 aa6.2□□□□□ -1.42
CLIP3-203ENST00000586457 HIGD1BQ9P298 99 aa6.2□□□□□ -1.42
CLIP3-203ENST00000586457 TMA7Q9Y2S6 64 aaKnown RBP6.2□□□□□ -1.42
CLIP3-203ENST00000586457 LRP2P98164 4655 aa6.2□□□□□ -1.42
CLIP3-203ENST00000586457 TMEM238LA0A1B0GVL6 79 aa6.19□□□□□ -1.42
CLIP3-203ENST00000586457 A6NJY4 79 aa6.19□□□□□ -1.42
CLIP3-203ENST00000586457 LINC00575Q6W349 94 aa6.18□□□□□ -1.42
CLIP3-203ENST00000586457 Q8N377 158 aa6.18□□□□□ -1.42
CLIP3-203ENST00000586457 IGLV5-48A0A075B6I7 105 aa6.17□□□□□ -1.42
CLIP3-203ENST00000586457 A0A0U1RQV1 116 aa6.16□□□□□ -1.42
CLIP3-203ENST00000586457 CD164Q04900 197 aa6.16□□□□□ -1.42
CLIP3-203ENST00000586457 Q6ZQY7 126 aa6.16□□□□□ -1.42
CLIP3-203ENST00000586457 SNHG12Q9BXW3 62 aa6.16□□□□□ -1.42
CLIP3-203ENST00000586457 LPAP08519 4548 aa6.15□□□□□ -1.42
CLIP3-203ENST00000586457 H0YGX0 51 aa6.15□□□□□ -1.42
CLIP3-203ENST00000586457 CFC1BP0CG36 223 aa6.15□□□□□ -1.42
CLIP3-203ENST00000586457 CFC1P0CG37 223 aa6.15□□□□□ -1.42
CLIP3-203ENST00000586457 CEND1Q8N111 149 aa6.15□□□□□ -1.42
CLIP3-203ENST00000586457 GHRHP01286 108 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms