RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KCNQ1DNQ9H478 68 aa15.65■□□□□ 0.1
SHMT1-207ENST00000580002 EPPK1P58107 5090 aaKnown RBP15.64■□□□□ 0.09
SHMT1-207ENST00000580002 UBE2BP63146 152 aa15.64■□□□□ 0.09
SHMT1-207ENST00000580002 A0A1W2PPM0 123 aa15.63■□□□□ 0.09
SHMT1-207ENST00000580002 ZNF73O43830 326 aaPredicted RBP15.62■□□□□ 0.09
SHMT1-207ENST00000580002 CLEC2BQ92478 149 aa15.6■□□□□ 0.09
SHMT1-207ENST00000580002 SCGB1C2P0DMR2 95 aa15.59■□□□□ 0.09
SHMT1-207ENST00000580002 XGP55808 180 aa15.59■□□□□ 0.09
SHMT1-207ENST00000580002 FAM218AQ96MZ4 157 aa15.58■□□□□ 0.08
SHMT1-207ENST00000580002 KRTAP4-16G5E9R7 235 aaPredicted RBP15.57■□□□□ 0.08
SHMT1-207ENST00000580002 PRYO14603 147 aa15.57■□□□□ 0.08
SHMT1-207ENST00000580002 REG3GQ6UW15 175 aa15.57■□□□□ 0.08
SHMT1-207ENST00000580002 DIRC1Q969H9 104 aa15.57■□□□□ 0.08
SHMT1-207ENST00000580002 SPRR1AP35321 89 aa15.56■□□□□ 0.08
SHMT1-207ENST00000580002 TCL1BO95988 128 aa15.54■□□□□ 0.08
SHMT1-207ENST00000580002 FABP2P12104 132 aa15.54■□□□□ 0.08
SHMT1-207ENST00000580002 PSORS1C2Q9UIG4 136 aa15.52■□□□□ 0.08
SHMT1-207ENST00000580002 VAMP3Q15836 100 aa15.52■□□□□ 0.07
SHMT1-207ENST00000580002 COX6CP09669 75 aa15.51■□□□□ 0.07
SHMT1-207ENST00000580002 B5MCH6 92 aa15.5■□□□□ 0.07
SHMT1-207ENST00000580002 COX7BP24311 80 aa15.5■□□□□ 0.07
SHMT1-207ENST00000580002 SPCS1Q9Y6A9 102 aa15.5■□□□□ 0.07
SHMT1-207ENST00000580002 ELOF1P60002 83 aaKnown RBP15.49■□□□□ 0.07
SHMT1-207ENST00000580002 FAT1Q14517 4588 aa15.48■□□□□ 0.07
SHMT1-207ENST00000580002 ETDCA0A1B0GVM5 59 aa15.48■□□□□ 0.07
SHMT1-207ENST00000580002 PRLHP81277 87 aa15.48■□□□□ 0.07
SHMT1-207ENST00000580002 SMR3BP02814 79 aaPredicted RBP15.47■□□□□ 0.07
SHMT1-207ENST00000580002 FAM19A1Q7Z5A9 133 aa15.47■□□□□ 0.07
SHMT1-207ENST00000580002 LINC00528Q8N1L1 170 aa15.47■□□□□ 0.07
SHMT1-207ENST00000580002 CBY1Q9Y3M2 126 aa15.47■□□□□ 0.07
SHMT1-207ENST00000580002 H0YGX0 51 aa15.46■□□□□ 0.07
SHMT1-207ENST00000580002 UBE2V1Q13404 147 aa15.46■□□□□ 0.07
SHMT1-207ENST00000580002 Q9BRP9 147 aa15.46■□□□□ 0.07
SHMT1-207ENST00000580002 VPS13BQ7Z7G8 4022 aa15.46■□□□□ 0.06
SHMT1-207ENST00000580002 LINC00575Q6W349 94 aa15.45■□□□□ 0.06
SHMT1-207ENST00000580002 TRBV7-6A0A0J9YX20 115 aa15.44■□□□□ 0.06
SHMT1-207ENST00000580002 H3BMG7 143 aa15.44■□□□□ 0.06
SHMT1-207ENST00000580002 C1orf137Q5JT78 98 aa15.44■□□□□ 0.06
SHMT1-207ENST00000580002 SRRM2Q9UQ35 2752 aaKnown RBP15.44■□□□□ 0.06
SHMT1-207ENST00000580002 K7EP34 96 aa15.43■□□□□ 0.06
SHMT1-207ENST00000580002 LST1O00453 97 aa15.43■□□□□ 0.06
SHMT1-207ENST00000580002 Q6ZRX8 168 aa15.43■□□□□ 0.06
SHMT1-207ENST00000580002 BCE1O60756 84 aa15.42■□□□□ 0.06
SHMT1-207ENST00000580002 GTF2H5Q6ZYL4 71 aa15.42■□□□□ 0.06
SHMT1-207ENST00000580002 ERC2-IT1O76042 136 aa15.41■□□□□ 0.06
SHMT1-207ENST00000580002 MTURNQ8N3F0 131 aa15.41■□□□□ 0.06
SHMT1-207ENST00000580002 HSPG2P98160 4391 aa15.4■□□□□ 0.06
SHMT1-207ENST00000580002 LYRM7Q5U5X0 104 aa15.4■□□□□ 0.06
SHMT1-207ENST00000580002 ATXN8Q156A1 80 aa15.39■□□□□ 0.05
SHMT1-207ENST00000580002 SMCR5Q8TEV8 140 aa15.39■□□□□ 0.05
SHMT1-207ENST00000580002 RYR1P21817 5038 aa15.38■□□□□ 0.05
SHMT1-207ENST00000580002 TRBV20-1A0A075B6N2 111 aa15.38■□□□□ 0.05
SHMT1-207ENST00000580002 KRTAP13-1Q8IUC0 172 aa15.38■□□□□ 0.05
SHMT1-207ENST00000580002 hADV29S1A0JD25 119 aa15.36■□□□□ 0.05
SHMT1-207ENST00000580002 UBE2AP49459 152 aa15.36■□□□□ 0.05
SHMT1-207ENST00000580002 HIGD2AQ9BW72 106 aa15.35■□□□□ 0.05
SHMT1-207ENST00000580002 KIAA1109Q2LD37 5005 aa15.35■□□□□ 0.05
SHMT1-207ENST00000580002 ST20-AS1Q8NBB2 130 aa15.32■□□□□ 0.04
SHMT1-207ENST00000580002 TRACP01848 142 aa15.31■□□□□ 0.04
SHMT1-207ENST00000580002 C9JAW5 83 aa15.31■□□□□ 0.04
SHMT1-207ENST00000580002 IGLV7-43P04211 117 aa15.31■□□□□ 0.04
SHMT1-207ENST00000580002 KRTAP17-1Q9BYP8 105 aa15.31■□□□□ 0.04
SHMT1-207ENST00000580002 SLC25A20O43772 301 aa15.3■□□□□ 0.04
SHMT1-207ENST00000580002 Q6ZQY7 126 aa15.3■□□□□ 0.04
SHMT1-207ENST00000580002 INAFM2P0DMQ5 153 aa15.29■□□□□ 0.04
SHMT1-207ENST00000580002 DHRS4-AS1Q9P1J3 65 aa15.29■□□□□ 0.04
SHMT1-207ENST00000580002 H0Y9J4 135 aa15.29■□□□□ 0.04
SHMT1-207ENST00000580002 A0A1B0GX51 115 aa15.26■□□□□ 0.03
SHMT1-207ENST00000580002 ZNF861PO60384 105 aa15.26■□□□□ 0.03
SHMT1-207ENST00000580002 SMCPP49901 116 aaPredicted RBP15.26■□□□□ 0.03
SHMT1-207ENST00000580002 PRO0461Q9UI25 63 aa15.26■□□□□ 0.03
SHMT1-207ENST00000580002 CDK2AP2O75956 126 aa15.26■□□□□ 0.03
SHMT1-207ENST00000580002 DNAL4O96015 105 aa15.25■□□□□ 0.03
SHMT1-207ENST00000580002 RPL37AP61513 92 aaKnown RBP15.25■□□□□ 0.03
SHMT1-207ENST00000580002 DEFB105AQ8NG35 78 aa15.24■□□□□ 0.03
SHMT1-207ENST00000580002 LINC01547P58512 204 aaPredicted RBP15.23■□□□□ 0.03
SHMT1-207ENST00000580002 KRTAP10-4P60372 401 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-207ENST00000580002 BAALC-AS2P0C853 105 aa15.21■□□□□ 0.03
SHMT1-207ENST00000580002 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.21■□□□□ 0.02
SHMT1-207ENST00000580002 SNCGO76070 127 aa15.19■□□□□ 0.02
SHMT1-207ENST00000580002 ORMDL1Q9P0S3 153 aa15.19■□□□□ 0.02
SHMT1-207ENST00000580002 Q8N377 158 aa15.18■□□□□ 0.02
SHMT1-207ENST00000580002 F8W1H4 67 aa15.14■□□□□ 0.01
SHMT1-207ENST00000580002 C3orf22Q8N5N4 141 aa15.14■□□□□ 0.01
SHMT1-207ENST00000580002 ANAPC11Q9NYG5 84 aa15.14■□□□□ 0.01
SHMT1-207ENST00000580002 BIRC6Q9NR09 4857 aa15.14■□□□□ 0.01
SHMT1-207ENST00000580002 GAGE2AQ6NT46 116 aa15.13■□□□□ 0.01
SHMT1-207ENST00000580002 ANKRD29Q8N6D5 301 aa15.13■□□□□ 0.01
SHMT1-207ENST00000580002 IGLV5-48A0A075B6I7 105 aa15.12■□□□□ 0.01
SHMT1-207ENST00000580002 A0A1B0GV72 72 aa15.12■□□□□ 0.01
SHMT1-207ENST00000580002 SPRR4Q96PI1 79 aa15.1■□□□□ 0.01
SHMT1-207ENST00000580002 H3BT86 120 aa15.08■□□□□ 0.01
SHMT1-207ENST00000580002 Q5VSD8 79 aa15.08■□□□□ 0
SHMT1-207ENST00000580002 SMIM29Q86T20 159 aa15.07■□□□□ 0
SHMT1-207ENST00000580002 FAM229AH3BQW9 127 aa15.06■□□□□ 0
SHMT1-207ENST00000580002 TMEM256-PLSCR3K7ERE1 68 aa15.06■□□□□ 0
SHMT1-207ENST00000580002 OCIAD2Q56VL3 154 aa15.06■□□□□ 0
SHMT1-207ENST00000580002 TEX49A0A1B0GTD5 131 aa15.06■□□□□ 0
SHMT1-207ENST00000580002 ETDBQ3ZM63 59 aa15.04■□□□□ -0
SHMT1-207ENST00000580002 LINC01600Q96MT4 127 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms