RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 PPDPFQ9H3Y8 114 aa11.41□□□□□ -0.58
SS18-208ENST00000577751 TRAV23DV6A0A075B6W5 121 aa11.39□□□□□ -0.59
SS18-208ENST00000577751 HSBP1L1C9JCN9 74 aa11.39□□□□□ -0.59
SS18-208ENST00000577751 KRTAP13-2Q52LG2 175 aa11.39□□□□□ -0.59
SS18-208ENST00000577751 Q6ZVH6 145 aa11.39□□□□□ -0.59
SS18-208ENST00000577751 SMCR5Q8TEV8 140 aa11.39□□□□□ -0.59
SS18-208ENST00000577751 IFITM1P13164 125 aa11.38□□□□□ -0.59
SS18-208ENST00000577751 SCGB1D1O95968 90 aa11.37□□□□□ -0.59
SS18-208ENST00000577751 LINC00518Q8N0U6 118 aa11.37□□□□□ -0.59
SS18-208ENST00000577751 TYMSOSQ8TAI1 123 aa11.37□□□□□ -0.59
SS18-208ENST00000577751 SPRR4Q96PI1 79 aa11.37□□□□□ -0.59
SS18-208ENST00000577751 Q6ZRX8 168 aa11.36□□□□□ -0.59
SS18-208ENST00000577751 COPS9Q8WXC6 57 aa11.36□□□□□ -0.59
SS18-208ENST00000577751 CBY1Q9Y3M2 126 aa11.36□□□□□ -0.59
SS18-208ENST00000577751 ZNF73O43830 326 aaPredicted RBP11.35□□□□□ -0.59
SS18-208ENST00000577751 MUSTN1Q8IVN3 82 aa11.34□□□□□ -0.59
SS18-208ENST00000577751 OR13C6PQ8NH95 151 aa11.34□□□□□ -0.59
SS18-208ENST00000577751 Q9BRP9 147 aa11.34□□□□□ -0.59
SS18-208ENST00000577751 ZNF706Q9Y5V0 76 aaPredicted RBP11.34□□□□□ -0.59
SS18-208ENST00000577751 ERC2-IT1O76042 136 aa11.32□□□□□ -0.6
SS18-208ENST00000577751 JOSD1Q15040 202 aaPredicted RBP11.3□□□□□ -0.6
SS18-208ENST00000577751 LINC00483Q53H64 154 aa11.29□□□□□ -0.6
SS18-208ENST00000577751 HINT1P49773 126 aaPredicted RBP11.28□□□□□ -0.6
SS18-208ENST00000577751 C3orf22Q8N5N4 141 aa11.28□□□□□ -0.6
SS18-208ENST00000577751 COX8AP10176 69 aa11.26□□□□□ -0.61
SS18-208ENST00000577751 DLEU1O43261 78 aa11.24□□□□□ -0.61
SS18-208ENST00000577751 C6orf99Q4VX62 202 aa11.24□□□□□ -0.61
SS18-208ENST00000577751 LINC00304Q8N9R0 145 aa11.24□□□□□ -0.61
SS18-208ENST00000577751 TSPAN13O95857 204 aa11.23□□□□□ -0.61
SS18-208ENST00000577751 ELOF1P60002 83 aaKnown RBP11.23□□□□□ -0.61
SS18-208ENST00000577751 GAGE2AQ6NT46 116 aa11.23□□□□□ -0.61
SS18-208ENST00000577751 A6NDN8 102 aa11.22□□□□□ -0.61
SS18-208ENST00000577751 TRAV13-2A0A0B4J235 113 aa11.21□□□□□ -0.61
SS18-208ENST00000577751 CTAG1AP78358 180 aa11.21□□□□□ -0.61
SS18-208ENST00000577751 TRBV7-6A0A0J9YX20 115 aa11.2□□□□□ -0.62
SS18-208ENST00000577751 COX7BP24311 80 aa11.2□□□□□ -0.62
SS18-208ENST00000577751 DHRS4-AS1Q9P1J3 65 aa11.2□□□□□ -0.62
SS18-208ENST00000577751 PAM16Q9Y3D7 125 aa11.2□□□□□ -0.62
SS18-208ENST00000577751 A4D1N5 150 aa11.19□□□□□ -0.62
SS18-208ENST00000577751 SPATA45Q537H7 98 aa11.19□□□□□ -0.62
SS18-208ENST00000577751 LRP2P98164 4655 aa11.18□□□□□ -0.62
SS18-208ENST00000577751 ST20-AS1Q8NBB2 130 aa11.18□□□□□ -0.62
SS18-208ENST00000577751 C14orf144Q96I85 54 aa11.18□□□□□ -0.62
SS18-208ENST00000577751 VAMP8Q9BV40 100 aa11.18□□□□□ -0.62
SS18-208ENST00000577751 A0A1B0GWB2 263 aa11.16□□□□□ -0.62
SS18-208ENST00000577751 SMIM11BQ8TCY0 68 aa11.16□□□□□ -0.62
SS18-208ENST00000577751 HIST1H4GQ99525 98 aa11.16□□□□□ -0.62
SS18-208ENST00000577751 SPAG11AQ6PDA7 123 aa11.15□□□□□ -0.62
SS18-208ENST00000577751 TMA7Q9Y2S6 64 aaKnown RBP11.15□□□□□ -0.62
SS18-208ENST00000577751 SPRR1BP22528 89 aa11.14□□□□□ -0.63
SS18-208ENST00000577751 PYY3Q5JQD4 70 aa11.14□□□□□ -0.63
SS18-208ENST00000577751 Q8NBF4 154 aa11.14□□□□□ -0.63
SS18-208ENST00000577751 HIGD1BQ9P298 99 aa11.14□□□□□ -0.63
SS18-208ENST00000577751 PRR4Q16378 134 aa11.13□□□□□ -0.63
SS18-208ENST00000577751 SSBP3-AS1Q7Z2R9 100 aa11.13□□□□□ -0.63
SS18-208ENST00000577751 IGLV9-49A0A0B4J1Y8 123 aa11.12□□□□□ -0.63
SS18-208ENST00000577751 SLC25A34Q6PIV7 304 aa11.12□□□□□ -0.63
SS18-208ENST00000577751 MOBPQ13875 183 aa11.11□□□□□ -0.63
SS18-208ENST00000577751 C2orf91Q6ZV80 131 aa11.11□□□□□ -0.63
SS18-208ENST00000577751 LPAP08519 4548 aa11.11□□□□□ -0.63
SS18-208ENST00000577751 UBR4Q5T4S7 5183 aa11.1□□□□□ -0.63
SS18-208ENST00000577751 C4orf48Q5BLP8 95 aa11.09□□□□□ -0.63
SS18-208ENST00000577751 SPINK1P00995 79 aa11.07□□□□□ -0.64
SS18-208ENST00000577751 C12orf57Q99622 126 aa11.07□□□□□ -0.64
SS18-208ENST00000577751 RETNLBQ9BQ08 111 aa11.06□□□□□ -0.64
SS18-208ENST00000577751 TAL2Q16559 108 aa11.05□□□□□ -0.64
SS18-208ENST00000577751 IGLV5-48A0A075B6I7 105 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 TEX49A0A1B0GTD5 131 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 CFC1BP0CG36 223 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 CFC1P0CG37 223 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 LINC01547P58512 204 aaPredicted RBP11.04□□□□□ -0.64
SS18-208ENST00000577751 VAMP3Q15836 100 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 C9orf153Q5TBE3 101 aa11.04□□□□□ -0.64
SS18-208ENST00000577751 NHP2Q9NX24 153 aaKnown RBP11.04□□□□□ -0.64
SS18-208ENST00000577751 DEFB105AQ8NG35 78 aa11.03□□□□□ -0.64
SS18-208ENST00000577751 LAMTOR3Q9UHA4 124 aa11.03□□□□□ -0.64
SS18-208ENST00000577751 RPS29P62273 56 aaKnown RBP11.02□□□□□ -0.65
SS18-208ENST00000577751 LINC00575Q6W349 94 aa11.01□□□□□ -0.65
SS18-208ENST00000577751 SMIM29Q86T20 159 aa11.01□□□□□ -0.65
SS18-208ENST00000577751 CEND1Q8N111 149 aa11.01□□□□□ -0.65
SS18-208ENST00000577751 A0A0B4J2C4 111 aa11□□□□□ -0.65
SS18-208ENST00000577751 SLC25A20O43772 301 aa10.99□□□□□ -0.65
SS18-208ENST00000577751 Q1RN00 199 aa10.98□□□□□ -0.65
SS18-208ENST00000577751 Q8N377 158 aa10.98□□□□□ -0.65
SS18-208ENST00000577751 BVES-AS1Q5T3Y7 98 aa10.97□□□□□ -0.65
SS18-208ENST00000577751 RAB37Q96AX2 223 aa10.97□□□□□ -0.65
SS18-208ENST00000577751 IGLV7-46A0A075B6I9 117 aa10.96□□□□□ -0.65
SS18-208ENST00000577751 hADV29S1A0JD25 119 aa10.96□□□□□ -0.65
SS18-208ENST00000577751 H7C2G1 150 aa10.94□□□□□ -0.66
SS18-208ENST00000577751 FXYD2P54710 66 aa10.94□□□□□ -0.66
SS18-208ENST00000577751 FP248Q71RG6 208 aaPredicted RBP10.94□□□□□ -0.66
SS18-208ENST00000577751 TMEM238LA0A1B0GVL6 79 aa10.93□□□□□ -0.66
SS18-208ENST00000577751 A6NJY4 79 aa10.93□□□□□ -0.66
SS18-208ENST00000577751 TPRXLQ17RH7 258 aa10.93□□□□□ -0.66
SS18-208ENST00000577751 HSD52Q0P140 79 aa10.92□□□□□ -0.66
SS18-208ENST00000577751 Q6ZQY7 126 aa10.92□□□□□ -0.66
SS18-208ENST00000577751 PRO1933Q9H354 126 aa10.92□□□□□ -0.66
SS18-208ENST00000577751 UQCR10Q9UDW1 63 aa10.91□□□□□ -0.66
SS18-208ENST00000577751 PRO1854Q9UHT4 67 aa10.91□□□□□ -0.66
SS18-208ENST00000577751 CD164Q04900 197 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms