RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SPRR2EP22531 72 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 SPRR2BP35325 72 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 SPRR2AP35326 72 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 SCGB3A1Q96QR1 104 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 PRO1933Q9H354 126 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 LAMTOR3Q9UHA4 124 aa7.79□□□□□ -1.16
VPS53-218ENST00000575207 ADCYAP1P18509 176 aa7.77□□□□□ -1.17
VPS53-218ENST00000575207 DDTP30046 118 aa7.76□□□□□ -1.17
VPS53-218ENST00000575207 ATP6V1G1O75348 118 aa7.75□□□□□ -1.17
VPS53-218ENST00000575207 PCP2Q8IVA1 136 aa7.75□□□□□ -1.17
VPS53-218ENST00000575207 MPLKIPQ8TAP9 179 aa7.75□□□□□ -1.17
VPS53-218ENST00000575207 A0A0G2JQZ4 141 aa7.74□□□□□ -1.17
VPS53-218ENST00000575207 C9JQL5 133 aa7.74□□□□□ -1.17
VPS53-218ENST00000575207 Q6ZVH6 145 aa7.74□□□□□ -1.17
VPS53-218ENST00000575207 NXT2Q9NPJ8 142 aaKnown RBP7.74□□□□□ -1.17
VPS53-218ENST00000575207 RBM12B-AS1Q9P1G2 102 aa7.73□□□□□ -1.17
VPS53-218ENST00000575207 LOC107984156A0A0G2JMH3 177 aa7.71□□□□□ -1.18
VPS53-218ENST00000575207 TCL1BO95988 128 aa7.71□□□□□ -1.18
VPS53-218ENST00000575207 AKR1D1P51857 326 aa7.71□□□□□ -1.18
VPS53-218ENST00000575207 ATP5L2Q7Z4Y8 100 aa7.71□□□□□ -1.18
VPS53-218ENST00000575207 ARL17AQ8IVW1 177 aa7.71□□□□□ -1.18
VPS53-218ENST00000575207 MT-ND4LP03901 98 aa7.7□□□□□ -1.18
VPS53-218ENST00000575207 SMIM13P0DJ93 91 aa7.7□□□□□ -1.18
VPS53-218ENST00000575207 IGLC3P0DOY3 106 aa7.7□□□□□ -1.18
VPS53-218ENST00000575207 ZNF22P17026 224 aaPredicted RBP7.7□□□□□ -1.18
VPS53-218ENST00000575207 MIR7-3HGQ8N6C7 128 aa7.7□□□□□ -1.18
VPS53-218ENST00000575207 A8MWP4 228 aa7.69□□□□□ -1.18
VPS53-218ENST00000575207 ANAPC16Q96DE5 110 aa7.68□□□□□ -1.18
VPS53-218ENST00000575207 TRBV10-2A0A0K0K1G8 114 aa7.67□□□□□ -1.18
VPS53-218ENST00000575207 FA2HQ7L5A8 372 aa7.66□□□□□ -1.18
VPS53-218ENST00000575207 Q96NJ1 140 aa7.66□□□□□ -1.18
VPS53-218ENST00000575207 TRAV23DV6A0A075B6W5 121 aa7.65□□□□□ -1.18
VPS53-218ENST00000575207 LINC01549A6NIU2 74 aa7.64□□□□□ -1.19
VPS53-218ENST00000575207 ZNF73O43830 326 aaPredicted RBP7.64□□□□□ -1.19
VPS53-218ENST00000575207 MEIG1Q5JSS6 88 aa7.63□□□□□ -1.19
VPS53-218ENST00000575207 HRES1P13985 223 aa7.62□□□□□ -1.19
VPS53-218ENST00000575207 S100A7L2Q5SY68 101 aa7.62□□□□□ -1.19
VPS53-218ENST00000575207 SPRR2FQ96RM1 72 aa7.62□□□□□ -1.19
VPS53-218ENST00000575207 IGFL1Q6UW32 110 aa7.61□□□□□ -1.19
VPS53-218ENST00000575207 A8MUU9 505 aa7.6□□□□□ -1.19
VPS53-218ENST00000575207 SPANXB1Q9NS25 103 aaPredicted RBP7.6□□□□□ -1.19
VPS53-218ENST00000575207 HINT1P49773 126 aaPredicted RBP7.59□□□□□ -1.19
VPS53-218ENST00000575207 S100PP25815 95 aa7.58□□□□□ -1.2
VPS53-218ENST00000575207 KRTAP10-5P60370 271 aa7.58□□□□□ -1.2
VPS53-218ENST00000575207 TAL2Q16559 108 aa7.58□□□□□ -1.2
VPS53-218ENST00000575207 TMEM170BQ5T4T1 132 aa7.58□□□□□ -1.2
VPS53-218ENST00000575207 DHRS4-AS1Q9P1J3 65 aa7.58□□□□□ -1.2
VPS53-218ENST00000575207 NDUFA6P56556 154 aa7.57□□□□□ -1.2
VPS53-218ENST00000575207 LCE1AQ5T7P2 110 aa7.57□□□□□ -1.2
VPS53-218ENST00000575207 DEFB105AQ8NG35 78 aa7.57□□□□□ -1.2
VPS53-218ENST00000575207 CLLU1Q5K131 121 aa7.56□□□□□ -1.2
VPS53-218ENST00000575207 SPRR2DP22532 72 aa7.55□□□□□ -1.2
VPS53-218ENST00000575207 UQCC3Q6UW78 93 aa7.55□□□□□ -1.2
VPS53-218ENST00000575207 TEX49A0A1B0GTD5 131 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 C11orf86A6NJI1 115 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 KRTAP16-1A8MUX0 517 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 LINC00587B1AMM8 73 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 MAP1LC3CQ9BXW4 147 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 SMCO4Q9NRQ5 59 aa7.54□□□□□ -1.2
VPS53-218ENST00000575207 DSTQ03001 7570 aaKnown RBP7.52□□□□□ -1.21
VPS53-218ENST00000575207 HERV-K104P63124 156 aa7.52□□□□□ -1.21
VPS53-218ENST00000575207 MTURNQ8N3F0 131 aa7.52□□□□□ -1.21
VPS53-218ENST00000575207 TMEM218A2RU14 115 aa7.51□□□□□ -1.21
VPS53-218ENST00000575207 MT1BP07438 61 aa7.51□□□□□ -1.21
VPS53-218ENST00000575207 COX19Q49B96 90 aa7.51□□□□□ -1.21
VPS53-218ENST00000575207 LINC01546A6NGU7 62 aa7.49□□□□□ -1.21
VPS53-218ENST00000575207 SEC11CQ9BY50 192 aa7.49□□□□□ -1.21
VPS53-218ENST00000575207 NDUFC2O95298 119 aa7.48□□□□□ -1.21
VPS53-218ENST00000575207 FABP9Q0Z7S8 132 aa7.48□□□□□ -1.21
VPS53-218ENST00000575207 NOTCH2NLQ7Z3S9 236 aa7.48□□□□□ -1.21
VPS53-218ENST00000575207 COMMD7Q86VX2 200 aa7.48□□□□□ -1.21
VPS53-218ENST00000575207 GHRHP01286 108 aa7.47□□□□□ -1.21
VPS53-218ENST00000575207 MIEN1Q9BRT3 115 aa7.47□□□□□ -1.21
VPS53-218ENST00000575207 RPS10P5Q9NQ39 176 aa7.47□□□□□ -1.21
VPS53-218ENST00000575207 CBY1Q9Y3M2 126 aa7.47□□□□□ -1.21
VPS53-218ENST00000575207 TMEM223A0PJW6 202 aa7.45□□□□□ -1.22
VPS53-218ENST00000575207 RHEBQ15382 184 aa7.45□□□□□ -1.22
VPS53-218ENST00000575207 LCE3BQ5TA77 95 aa7.45□□□□□ -1.22
VPS53-218ENST00000575207 TRAPPC1Q9Y5R8 145 aa7.43□□□□□ -1.22
VPS53-218ENST00000575207 A6NJY4 79 aa7.42□□□□□ -1.22
VPS53-218ENST00000575207 IFITM2Q01629 132 aa7.42□□□□□ -1.22
VPS53-218ENST00000575207 NDUFA5Q16718 116 aa7.42□□□□□ -1.22
VPS53-218ENST00000575207 MYMXA0A1B0GTQ4 84 aa7.41□□□□□ -1.22
VPS53-218ENST00000575207 BAGE3Q86Y29 109 aa7.41□□□□□ -1.22
VPS53-218ENST00000575207 HBDP02042 147 aa7.4□□□□□ -1.22
VPS53-218ENST00000575207 ELOF1P60002 83 aaKnown RBP7.4□□□□□ -1.22
VPS53-218ENST00000575207 TRBV7-7A0A0K0K1E9 115 aa7.39□□□□□ -1.23
VPS53-218ENST00000575207 LINC00614P0C842 121 aa7.39□□□□□ -1.23
VPS53-218ENST00000575207 IGLV5-48A0A075B6I7 105 aa7.38□□□□□ -1.23
VPS53-218ENST00000575207 APOC3P02656 99 aa7.38□□□□□ -1.23
VPS53-218ENST00000575207 COX7BP24311 80 aa7.38□□□□□ -1.23
VPS53-218ENST00000575207 Q5VV11 94 aa7.38□□□□□ -1.23
VPS53-218ENST00000575207 SNAPINO95295 136 aa7.37□□□□□ -1.23
VPS53-218ENST00000575207 PMCHL1Q16048 86 aa7.36□□□□□ -1.23
VPS53-218ENST00000575207 C18orf32Q8TCD1 76 aa7.36□□□□□ -1.23
VPS53-218ENST00000575207 LOC100996750A0A140TA64 210 aa7.35□□□□□ -1.23
VPS53-218ENST00000575207 SVBPQ8N300 66 aa7.35□□□□□ -1.23
VPS53-218ENST00000575207 KRTAP4-6Q9BYQ5 205 aa7.35□□□□□ -1.23
VPS53-218ENST00000575207 A0A096LNJ9 63 aa7.34□□□□□ -1.23
VPS53-218ENST00000575207 LST1O00453 97 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms