RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 RPS10P46783 165 aaKnown RBP3.82□□□□□ -1.8
VPS53-212ENST00000572259 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
VPS53-212ENST00000572259 Q6ZRN7 208 aaPredicted RBP3.82□□□□□ -1.8
VPS53-212ENST00000572259 ATOH7Q8N100 152 aa3.82□□□□□ -1.8
VPS53-212ENST00000572259 KLK12Q9UKR0 248 aa3.82□□□□□ -1.8
VPS53-212ENST00000572259 IGKV2D-24A0A075B6R9 120 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 A0A087WTM6 91 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 A0A096LNJ9 63 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 HBDP02042 147 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 ANGP03950 147 aaKnown RBP3.81□□□□□ -1.8
VPS53-212ENST00000572259 IQCJQ1A5X6 159 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 CLLU1Q5K131 121 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 Q5W150 140 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 C7orf65Q6ZTY9 151 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 DIRC1Q969H9 104 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 SNHG12Q9BXW3 62 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 ST20Q9HBF5 79 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 V9GYV3 84 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 PKD1P98161 4303 aa3.81□□□□□ -1.8
VPS53-212ENST00000572259 A0A0B4J2C4 111 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 SMIM27A0A1W2PRY6 76 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 A8MUU9 505 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 CCDC179H3BU77 68 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 I3L3M4 83 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 MT-ND6P03923 174 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 TMEM258P61165 79 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 DEFB116Q30KQ4 102 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 DNAH11Q96DT5 4516 aa3.8□□□□□ -1.8
VPS53-212ENST00000572259 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.79□□□□□ -1.8
VPS53-212ENST00000572259 TRBV6-5A0A0K0K1A5 114 aa3.79□□□□□ -1.8
VPS53-212ENST00000572259 SDHAF1A6NFY7 115 aa3.79□□□□□ -1.8
VPS53-212ENST00000572259 XCL1P47992 114 aa3.79□□□□□ -1.8
VPS53-212ENST00000572259 LINC01545Q5VT33 79 aa3.79□□□□□ -1.8
VPS53-212ENST00000572259 COPS9Q8WXC6 57 aa3.79□□□□□ -1.8
VPS53-212ENST00000572259 DYNC1H1Q14204 4646 aaKnown RBP3.79□□□□□ -1.8
VPS53-212ENST00000572259 LRCOL1A6NCL2 159 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 FCER1GP30273 86 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 CKS2P33552 79 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 MRPS36P82909 103 aaKnown RBP3.78□□□□□ -1.8
VPS53-212ENST00000572259 SOSTDC1Q6X4U4 206 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 LINC00269Q8N2A0 174 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 Q8N814 137 aa3.78□□□□□ -1.8
VPS53-212ENST00000572259 RPL39LQ96EH5 51 aaKnown RBP3.78□□□□□ -1.8
VPS53-212ENST00000572259 TRBV20-1A0A075B6N2 111 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 IGLV7-43P04211 117 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 MRPL54Q6P161 138 aaKnown RBP3.77□□□□□ -1.81
VPS53-212ENST00000572259 ENHOQ6UWT2 76 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 IMMP2LQ96T52 175 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 C20orf78Q9BR46 151 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 PRR34Q9NV39 138 aa3.77□□□□□ -1.81
VPS53-212ENST00000572259 C7orf77A4D0Y5 90 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 H3BT86 120 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 PHOX2AO14813 284 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 FUSP35637 526 aaKnown RBP eCLIP3.76□□□□□ -1.81
VPS53-212ENST00000572259 POLR2KP53803 58 aaKnown RBP3.76□□□□□ -1.81
VPS53-212ENST00000572259 C2orf91Q6ZV80 131 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 SEC11CQ9BY50 192 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 NHP2Q9NX24 153 aaKnown RBP3.76□□□□□ -1.81
VPS53-212ENST00000572259 LRP1BQ9NZR2 4599 aa3.76□□□□□ -1.81
VPS53-212ENST00000572259 IGLV4-60A0A075B6I1 120 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.75□□□□□ -1.81
VPS53-212ENST00000572259 IGKV2-29A2NJV5 120 aaPredicted RBP3.75□□□□□ -1.81
VPS53-212ENST00000572259 H3BPC8 53 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 H3BQ85 93 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 RPL28P46779 137 aaKnown RBP3.75□□□□□ -1.81
VPS53-212ENST00000572259 SS18Q15532 418 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 CLPSL2Q6UWE3 100 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 TMEM136Q6ZRR5 245 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 Q8NDZ9 215 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 DEFB104AQ8WTQ1 72 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 TMEM242Q9NWH2 141 aa3.75□□□□□ -1.81
VPS53-212ENST00000572259 DNAH5Q8TE73 4624 aa3.74□□□□□ -1.81
VPS53-212ENST00000572259 IGLV10-54A0A075B6I4 117 aa3.74□□□□□ -1.81
VPS53-212ENST00000572259 IGKV3OR2-268A0A0C4DH90 116 aa3.74□□□□□ -1.81
VPS53-212ENST00000572259 D6R8Y8 96 aa3.74□□□□□ -1.81
VPS53-212ENST00000572259 KRTAP10-12P60413 245 aa3.74□□□□□ -1.81
VPS53-212ENST00000572259 ZNF861PO60384 105 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 FXYD2P54710 66 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 FAM229BQ4G0N7 80 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 TIMM21Q9BVV7 248 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 SMIM2Q9BVW6 85 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 CDC42SE2Q9NRR3 84 aa3.73□□□□□ -1.81
VPS53-212ENST00000572259 LINC00959A0A1B0GUT2 108 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 K7EMI3 77 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 SPINK8P0C7L1 97 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 IFITM1P13164 125 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 KRTAP10-1P60331 282 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 WFDC2Q14508 124 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 C1orf64Q8NEQ6 169 aa3.72□□□□□ -1.81
VPS53-212ENST00000572259 TRAV7A0A075B6U4 112 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 TIMM17BO60830 172 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 FABP4P15090 132 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 IFI27P40305 119 aaPredicted RBP3.71□□□□□ -1.82
VPS53-212ENST00000572259 KRTAP26-1Q6PEX3 210 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 SVBPQ8N300 66 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 ST20-AS1Q8NBB2 130 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 CHCHD1Q96BP2 118 aaKnown RBP3.71□□□□□ -1.82
VPS53-212ENST00000572259 NXT2Q9NPJ8 142 aaKnown RBP3.71□□□□□ -1.82
VPS53-212ENST00000572259 UBE2D4Q9Y2X8 147 aa3.71□□□□□ -1.82
VPS53-212ENST00000572259 KIAA1109Q2LD37 5005 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms