RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 OR13C6PQ8NH95 151 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 TMEM126AQ9H061 195 aa4.09□□□□□ -1.75
VPS53-209ENST00000570771 MYCBP2O75592 4640 aa4.09□□□□□ -1.76
VPS53-209ENST00000570771 M0QXV9 152 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 NCR3O14931 201 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 EIF4EBP3O60516 100 aaPredicted RBP4.08□□□□□ -1.76
VPS53-209ENST00000570771 CFC1BP0CG36 223 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 CFC1P0CG37 223 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 RPL13AP40429 203 aaKnown RBP4.08□□□□□ -1.76
VPS53-209ENST00000570771 Q1RN00 199 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 FAM19A5Q7Z5A7 132 aaPredicted RBP4.08□□□□□ -1.76
VPS53-209ENST00000570771 SPACA4Q8TDM5 124 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 SNHG12Q9BXW3 62 aa4.08□□□□□ -1.76
VPS53-209ENST00000570771 IGKV2-28A0A075B6P5 120 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 IGKV2D-28P01615 120 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 COX6CP09669 75 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 XGP55808 180 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 LYRM7Q5U5X0 104 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 Q6ZSA8 131 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 MRPL55Q7Z7F7 128 aaKnown RBP4.07□□□□□ -1.76
VPS53-209ENST00000570771 KRTAP7-1Q8IUC3 87 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 FAT3Q8TDW7 4589 aa4.07□□□□□ -1.76
VPS53-209ENST00000570771 LRP1Q07954 4544 aaKnown RBP4.07□□□□□ -1.76
VPS53-209ENST00000570771 A0A087WYN8 130 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 SERTAD4-AS1Q5TG53 156 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 LINC00337Q8N6G1 96 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 Q8NDZ9 215 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 PLAC8Q9NZF1 115 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 C22orf24Q9Y442 160 aa4.06□□□□□ -1.76
VPS53-209ENST00000570771 TRAV23DV6A0A075B6W5 121 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 TRBV10-3A0A0K0K1G6 114 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 A0A1W2PNN7 141 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 FAM168BA1KXE4 195 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 H7C2G1 150 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 PRYO14603 147 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 SNCGO76070 127 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 IGLV6-57P01721 117 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 PSMB2P49721 201 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 UBE2BP63146 152 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 PRR3P79522 188 aaKnown RBP4.05□□□□□ -1.76
VPS53-209ENST00000570771 VAMP3Q15836 100 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 C7orf33Q8WU49 177 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 LINC00167Q96N53 147 aa4.05□□□□□ -1.76
VPS53-209ENST00000570771 IGLV1-50A0A075B6I6 118 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 GAGE10A6NGK3 116 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 C9orf118A6NHY6 69 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 EPM2AB3EWF7 344 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 K7ERJ3 54 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 TSPAN13O95857 204 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 RPL28P46779 137 aaKnown RBP4.04□□□□□ -1.76
VPS53-209ENST00000570771 SCXQ7RTU7 201 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 KRTAP11-1Q8IUC1 163 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 DIRC1Q969H9 104 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 KCNQ1DNQ9H478 68 aa4.04□□□□□ -1.76
VPS53-209ENST00000570771 TRBV7-6A0A0J9YX20 115 aa4.03□□□□□ -1.76
VPS53-209ENST00000570771 H0YGX0 51 aa4.03□□□□□ -1.76
VPS53-209ENST00000570771 TAX1BP3O14907 124 aa4.03□□□□□ -1.76
VPS53-209ENST00000570771 SCGB1C2P0DMR2 95 aa4.03□□□□□ -1.76
VPS53-209ENST00000570771 SMIM11BQ8TCY0 68 aa4.03□□□□□ -1.76
VPS53-209ENST00000570771 SRRM2Q9UQ35 2752 aaKnown RBP4.02□□□□□ -1.77
VPS53-209ENST00000570771 ETDCA0A1B0GVM5 59 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 RPL37AP8A6NKH3 93 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 H3BUT2 72 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 ZNF73O43830 326 aaPredicted RBP4.02□□□□□ -1.77
VPS53-209ENST00000570771 FABP2P12104 132 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 KRTAP10-4P60372 401 aaPredicted RBP4.02□□□□□ -1.77
VPS53-209ENST00000570771 REG3GQ6UW15 175 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 PHF5AQ7RTV0 110 aaKnown RBP4.02□□□□□ -1.77
VPS53-209ENST00000570771 CIRBP-AS1Q8TBR5 109 aa4.02□□□□□ -1.77
VPS53-209ENST00000570771 TRBV20-1A0A075B6N2 111 aa4.01□□□□□ -1.77
VPS53-209ENST00000570771 TRIAP1O43715 76 aa4.01□□□□□ -1.77
VPS53-209ENST00000570771 SLC25A20O43772 301 aa4.01□□□□□ -1.77
VPS53-209ENST00000570771 SMR3BP02814 79 aaPredicted RBP4.01□□□□□ -1.77
VPS53-209ENST00000570771 COX7BP24311 80 aa4.01□□□□□ -1.77
VPS53-209ENST00000570771 C6orf99Q4VX62 202 aa4.01□□□□□ -1.77
VPS53-209ENST00000570771 A0A1B0GX51 115 aa4□□□□□ -1.77
VPS53-209ENST00000570771 A0A1W2PPM0 123 aa4□□□□□ -1.77
VPS53-209ENST00000570771 H0Y9J4 135 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 BCE1O60756 84 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 CDK2AP2O75956 126 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 DNAL4O96015 105 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 INAFM2P0DMQ5 153 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 SPRR1AP35321 89 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 UBE2AP49459 152 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 ELOF1P60002 83 aaKnown RBP3.99□□□□□ -1.77
VPS53-209ENST00000570771 ATXN8Q156A1 80 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 GTF2H5Q6ZYL4 71 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 DHRS4-AS1Q9P1J3 65 aa3.99□□□□□ -1.77
VPS53-209ENST00000570771 TNXBP22105 4242 aa3.98□□□□□ -1.77
VPS53-209ENST00000570771 H3BQ85 93 aa3.98□□□□□ -1.77
VPS53-209ENST00000570771 Q6ZRX8 168 aa3.98□□□□□ -1.77
VPS53-209ENST00000570771 FAM19A1Q7Z5A9 133 aa3.98□□□□□ -1.77
VPS53-209ENST00000570771 NAA38Q9BRA0 125 aaKnown RBP3.98□□□□□ -1.77
VPS53-209ENST00000570771 HERC1Q15751 4861 aa3.98□□□□□ -1.77
VPS53-209ENST00000570771 hADV29S1A0JD25 119 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 B5MCH6 92 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 KRTAP4-16G5E9R7 235 aaPredicted RBP3.97□□□□□ -1.77
VPS53-209ENST00000570771 TRACP01848 142 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 C1orf137Q5JT78 98 aa3.97□□□□□ -1.77
VPS53-209ENST00000570771 LINC00575Q6W349 94 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms