RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TRANK1O15050 2925 aa10.06□□□□□ -0.8
CIITA-204ENST00000570546 SPACA4Q8TDM5 124 aa10.06□□□□□ -0.8
CIITA-204ENST00000570546 C7orf65Q6ZTY9 151 aa10.05□□□□□ -0.8
CIITA-204ENST00000570546 TLX1NBP0CAT3 122 aa10.05□□□□□ -0.8
CIITA-204ENST00000570546 PLA2G2DQ9UNK4 145 aa10.05□□□□□ -0.8
CIITA-204ENST00000570546 MKI67P46013 3256 aaKnown RBP10.05□□□□□ -0.8
CIITA-204ENST00000570546 H7BZZ5 65 aa10.04□□□□□ -0.8
CIITA-204ENST00000570546 A0A0C4DFX4 3053 aa10.03□□□□□ -0.8
CIITA-204ENST00000570546 A0A1B0GU69 56 aa10.03□□□□□ -0.8
CIITA-204ENST00000570546 KRTAP1-1Q07627 177 aa10.03□□□□□ -0.8
CIITA-204ENST00000570546 LINC00313P59037 77 aa10.01□□□□□ -0.81
CIITA-204ENST00000570546 A0A0G2JQZ4 141 aa10□□□□□ -0.81
CIITA-204ENST00000570546 A0A1W2PNN7 141 aa10□□□□□ -0.81
CIITA-204ENST00000570546 K7EIL1 84 aa9.99□□□□□ -0.81
CIITA-204ENST00000570546 PRR15Q8IV56 129 aa9.98□□□□□ -0.81
CIITA-204ENST00000570546 RANBP2P49792 3224 aaKnown RBP9.98□□□□□ -0.81
CIITA-204ENST00000570546 MRPL34Q9BQ48 92 aaKnown RBP9.97□□□□□ -0.81
CIITA-204ENST00000570546 LOC101927531A0A1B0GV80 90 aa9.96□□□□□ -0.81
CIITA-204ENST00000570546 CASC10Q5T4H9 136 aa9.96□□□□□ -0.82
CIITA-204ENST00000570546 COA5Q86WW8 74 aa9.96□□□□□ -0.82
CIITA-204ENST00000570546 BRCA2P51587 3418 aa9.95□□□□□ -0.82
CIITA-204ENST00000570546 A0A1W2PNM2 257 aa9.95□□□□□ -0.82
CIITA-204ENST00000570546 A8MUN3 132 aa9.94□□□□□ -0.82
CIITA-204ENST00000570546 C8orf87E5RJ46 101 aa9.92□□□□□ -0.82
CIITA-204ENST00000570546 C8orf17Q9NRJ1 99 aa9.92□□□□□ -0.82
CIITA-204ENST00000570546 LAMA3Q16787 3333 aa9.9□□□□□ -0.82
CIITA-204ENST00000570546 TYMSOSQ8TAI1 123 aa9.9□□□□□ -0.82
CIITA-204ENST00000570546 FASNP49327 2511 aaKnown RBP9.89□□□□□ -0.83
CIITA-204ENST00000570546 IGLV5-48A0A075B6I7 105 aa9.89□□□□□ -0.83
CIITA-204ENST00000570546 IGLV5-37A0A075B6J1 123 aa9.88□□□□□ -0.83
CIITA-204ENST00000570546 C9orf163Q8N9P6 203 aa9.88□□□□□ -0.83
CIITA-204ENST00000570546 FAM229AH3BQW9 127 aa9.87□□□□□ -0.83
CIITA-204ENST00000570546 LINC00336Q6ZUF6 198 aa9.87□□□□□ -0.83
CIITA-204ENST00000570546 A0A1B0GVX0 72 aa9.87□□□□□ -0.83
CIITA-204ENST00000570546 CYP4F30PQ9H0H9 118 aa9.86□□□□□ -0.83
CIITA-204ENST00000570546 CNBPP62633 177 aaKnown RBP9.85□□□□□ -0.83
CIITA-204ENST00000570546 Q96NJ1 140 aa9.85□□□□□ -0.83
CIITA-204ENST00000570546 ZNF861PO60384 105 aa9.85□□□□□ -0.83
CIITA-204ENST00000570546 DSCR10P59022 87 aa9.83□□□□□ -0.84
CIITA-204ENST00000570546 A0A087WTM6 91 aa9.82□□□□□ -0.84
CIITA-204ENST00000570546 ATP11AUNQ6ZP68 121 aa9.82□□□□□ -0.84
CIITA-204ENST00000570546 CFAP54Q96N23 3096 aa9.8□□□□□ -0.84
CIITA-204ENST00000570546 Q8NDZ9 215 aa9.8□□□□□ -0.84
CIITA-204ENST00000570546 OCR1Q9BZK8 76 aa9.8□□□□□ -0.84
CIITA-204ENST00000570546 APLNQ9ULZ1 77 aa9.8□□□□□ -0.84
CIITA-204ENST00000570546 ANAPC11Q9NYG5 84 aa9.79□□□□□ -0.84
CIITA-204ENST00000570546 LAMA2P24043 3122 aaKnown RBP9.79□□□□□ -0.84
CIITA-204ENST00000570546 EPG5Q9HCE0 2579 aa9.79□□□□□ -0.84
CIITA-204ENST00000570546 IGLV8-61A0A075B6I0 122 aa9.79□□□□□ -0.84
CIITA-204ENST00000570546 SPRR4Q96PI1 79 aa9.78□□□□□ -0.84
CIITA-204ENST00000570546 SSBP3-AS1Q7Z2R9 100 aa9.78□□□□□ -0.84
CIITA-204ENST00000570546 PLA2G1BP04054 148 aaKnown RBP9.77□□□□□ -0.84
CIITA-204ENST00000570546 UNC80Q8N2C7 3258 aa9.76□□□□□ -0.85
CIITA-204ENST00000570546 PSORS1C2Q9UIG4 136 aa9.75□□□□□ -0.85
CIITA-204ENST00000570546 SPANXA2-OT1Q8N9U9 137 aa9.75□□□□□ -0.85
CIITA-204ENST00000570546 WWC2-AS2Q96NR7 200 aa9.74□□□□□ -0.85
CIITA-204ENST00000570546 CR1P17927 2039 aa9.72□□□□□ -0.85
CIITA-204ENST00000570546 F8P00451 2351 aa9.72□□□□□ -0.85
CIITA-204ENST00000570546 IGLV7-43P04211 117 aa9.72□□□□□ -0.85
CIITA-204ENST00000570546 CYSTM1Q9H1C7 97 aa9.69□□□□□ -0.86
CIITA-204ENST00000570546 WIPF1O43516 503 aa9.69□□□□□ -0.86
CIITA-204ENST00000570546 FLNAP21333 2647 aaKnown RBP9.68□□□□□ -0.86
CIITA-204ENST00000570546 UQCR11O14957 56 aa9.68□□□□□ -0.86
CIITA-204ENST00000570546 MGAQ8IWI9 3026 aa9.68□□□□□ -0.86
CIITA-204ENST00000570546 CDH23Q9H251 3354 aa9.67□□□□□ -0.86
CIITA-204ENST00000570546 LINC00304Q8N9R0 145 aa9.64□□□□□ -0.87
CIITA-204ENST00000570546 PRUNE2Q8WUY3 3088 aa9.63□□□□□ -0.87
CIITA-204ENST00000570546 HECTD1Q9ULT8 2610 aa9.63□□□□□ -0.87
CIITA-204ENST00000570546 Q1T7F1 81 aa9.63□□□□□ -0.87
CIITA-204ENST00000570546 MIR22HGQ0VDD5 57 aa9.62□□□□□ -0.87
CIITA-204ENST00000570546 SPRR1AP35321 89 aa9.62□□□□□ -0.87
CIITA-204ENST00000570546 TRIOO75962 3097 aa9.62□□□□□ -0.87
CIITA-204ENST00000570546 ITPR3Q14573 2671 aa9.6□□□□□ -0.87
CIITA-204ENST00000570546 Q5XG85 94 aa9.59□□□□□ -0.87
CIITA-204ENST00000570546 C9orf92A6NGG3 77 aa9.58□□□□□ -0.88
CIITA-204ENST00000570546 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.57□□□□□ -0.88
CIITA-204ENST00000570546 ZNF292O60281 2723 aa9.55□□□□□ -0.88
CIITA-204ENST00000570546 FAM229BQ4G0N7 80 aa9.55□□□□□ -0.88
CIITA-204ENST00000570546 KTN1-AS1Q86SY8 53 aa9.55□□□□□ -0.88
CIITA-204ENST00000570546 KRTAP26-1Q6PEX3 210 aa9.55□□□□□ -0.88
CIITA-204ENST00000570546 WDFY4Q6ZS81 3184 aa9.55□□□□□ -0.88
CIITA-204ENST00000570546 CDC42SE1Q9NRR8 79 aa9.54□□□□□ -0.88
CIITA-204ENST00000570546 AKAP13Q12802 2813 aa9.54□□□□□ -0.88
CIITA-204ENST00000570546 XIRP2A4UGR9 3374 aa9.53□□□□□ -0.88
CIITA-204ENST00000570546 IGLV7-46A0A075B6I9 117 aa9.53□□□□□ -0.88
CIITA-204ENST00000570546 CD164Q04900 197 aa9.51□□□□□ -0.89
CIITA-204ENST00000570546 FLNBO75369 2602 aaKnown RBP9.51□□□□□ -0.89
CIITA-204ENST00000570546 DNAH14Q0VDD8 3507 aa9.51□□□□□ -0.89
CIITA-204ENST00000570546 MMP24-AS1A0A0U1RRL7 71 aa9.51□□□□□ -0.89
CIITA-204ENST00000570546 FP248Q71RG6 208 aaPredicted RBP9.51□□□□□ -0.89
CIITA-204ENST00000570546 SMR3BP02814 79 aaPredicted RBP9.5□□□□□ -0.89
CIITA-204ENST00000570546 PRR26Q8N8Z3 221 aa9.48□□□□□ -0.89
CIITA-204ENST00000570546 VPS13AQ96RL7 3174 aa9.47□□□□□ -0.89
CIITA-204ENST00000570546 Q8N1X5 172 aa9.46□□□□□ -0.89
CIITA-204ENST00000570546 TNP2Q05952 138 aa9.46□□□□□ -0.9
CIITA-204ENST00000570546 SPINT4Q6UDR6 99 aa9.45□□□□□ -0.9
CIITA-204ENST00000570546 SPRR1BP22528 89 aa9.45□□□□□ -0.9
CIITA-204ENST00000570546 SZT2Q5T011 3432 aa9.45□□□□□ -0.9
CIITA-204ENST00000570546 ATRQ13535 2644 aa9.45□□□□□ -0.9
CIITA-204ENST00000570546 LINC00472Q9H8W2 130 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms