RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NDUFC2-KCTD14E9PQ53 114 aa9.63□□□□□ -0.87
VPS35-210ENST00000568784 UBE2BP63146 152 aa9.63□□□□□ -0.87
VPS35-210ENST00000568784 PRR34Q9NV39 138 aa9.63□□□□□ -0.87
VPS35-210ENST00000568784 FUSP35637 526 aaKnown RBP eCLIP9.62□□□□□ -0.87
VPS35-210ENST00000568784 CXCL6P80162 114 aa9.62□□□□□ -0.87
VPS35-210ENST00000568784 Q6ZRP5 223 aa9.62□□□□□ -0.87
VPS35-210ENST00000568784 FAM30AQ9NZY2 134 aa9.62□□□□□ -0.87
VPS35-210ENST00000568784 TMEM254Q8TBM7 123 aa9.61□□□□□ -0.87
VPS35-210ENST00000568784 SERP1Q9Y6X1 66 aa9.61□□□□□ -0.87
VPS35-210ENST00000568784 LRCOL1A6NCL2 159 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 H3BQ85 93 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 ESRGQ1W209 222 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 OTOGQ6ZRI0 2925 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 DEFB131BA0A096LNP1 70 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 MGAM2Q2M2H8 2515 aa9.6□□□□□ -0.87
VPS35-210ENST00000568784 TRBV7-4A0A0J9YYF1 115 aa9.59□□□□□ -0.87
VPS35-210ENST00000568784 MRAPQ8TCY5 172 aa9.59□□□□□ -0.87
VPS35-210ENST00000568784 PRR4Q16378 134 aa9.59□□□□□ -0.87
VPS35-210ENST00000568784 LINC00474Q9P2X8 69 aa9.59□□□□□ -0.87
VPS35-210ENST00000568784 TENM3Q9P273 2699 aa9.58□□□□□ -0.88
VPS35-210ENST00000568784 C7orf33Q8WU49 177 aa9.57□□□□□ -0.88
VPS35-210ENST00000568784 BRK1Q8WUW1 75 aa9.57□□□□□ -0.88
VPS35-210ENST00000568784 LINC00528Q8N1L1 170 aa9.57□□□□□ -0.88
VPS35-210ENST00000568784 C15orf56Q8N910 161 aa9.57□□□□□ -0.88
VPS35-210ENST00000568784 GVQW2A0A096LPI5 108 aaPredicted RBP9.56□□□□□ -0.88
VPS35-210ENST00000568784 SERTAD4-AS1Q5TG53 156 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 Q5XG85 94 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 HIGD2AQ9BW72 106 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 PKIGQ9Y2B9 76 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 TRBV7-6A0A0J9YX20 115 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 DEFB116Q30KQ4 102 aa9.56□□□□□ -0.88
VPS35-210ENST00000568784 FAM168BA1KXE4 195 aa9.55□□□□□ -0.88
VPS35-210ENST00000568784 ST20-AS1Q8NBB2 130 aa9.55□□□□□ -0.88
VPS35-210ENST00000568784 IGKV2-24A0A0C4DH68 120 aa9.55□□□□□ -0.88
VPS35-210ENST00000568784 A0A0U1RQV1 116 aa9.55□□□□□ -0.88
VPS35-210ENST00000568784 C11orf45Q8TAV5 145 aa9.55□□□□□ -0.88
VPS35-210ENST00000568784 KLKP1Q107X0 134 aa9.54□□□□□ -0.88
VPS35-210ENST00000568784 A0A0G2JQZ4 141 aa9.54□□□□□ -0.88
VPS35-210ENST00000568784 A0A1W2PNN7 141 aa9.54□□□□□ -0.88
VPS35-210ENST00000568784 TRRAPQ9Y4A5 3859 aa9.54□□□□□ -0.88
VPS35-210ENST00000568784 C1orf137Q5JT78 98 aa9.53□□□□□ -0.88
VPS35-210ENST00000568784 SMIM26A0A096LP01 95 aa9.53□□□□□ -0.88
VPS35-210ENST00000568784 SMIM29Q86T20 159 aa9.53□□□□□ -0.88
VPS35-210ENST00000568784 PRYO14603 147 aa9.51□□□□□ -0.89
VPS35-210ENST00000568784 LINC00336Q6ZUF6 198 aa9.51□□□□□ -0.89
VPS35-210ENST00000568784 IGKV4-1P06312 121 aa9.5□□□□□ -0.89
VPS35-210ENST00000568784 Q8N377 158 aa9.5□□□□□ -0.89
VPS35-210ENST00000568784 NDUFC1O43677 76 aa9.49□□□□□ -0.89
VPS35-210ENST00000568784 A0A096LNI7 61 aa9.49□□□□□ -0.89
VPS35-210ENST00000568784 WFDC13Q8IUB5 93 aa9.48□□□□□ -0.89
VPS35-210ENST00000568784 BCE1O60756 84 aa9.47□□□□□ -0.89
VPS35-210ENST00000568784 FBN1P35555 2871 aaKnown RBP9.47□□□□□ -0.89
VPS35-210ENST00000568784 CASC10Q5T4H9 136 aa9.47□□□□□ -0.89
VPS35-210ENST00000568784 PSCAO43653 123 aa9.45□□□□□ -0.9
VPS35-210ENST00000568784 DHRS4-AS1Q9P1J3 65 aa9.45□□□□□ -0.9
VPS35-210ENST00000568784 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.44□□□□□ -0.9
VPS35-210ENST00000568784 ERC2-IT1O76042 136 aa9.43□□□□□ -0.9
VPS35-210ENST00000568784 KRTAP10-11P60412 298 aa9.43□□□□□ -0.9
VPS35-210ENST00000568784 PRLHP81277 87 aa9.43□□□□□ -0.9
VPS35-210ENST00000568784 LINC01556Q5JQF7 62 aa9.42□□□□□ -0.9
VPS35-210ENST00000568784 Q6ZRX8 168 aa9.42□□□□□ -0.9
VPS35-210ENST00000568784 FP248Q71RG6 208 aaPredicted RBP9.42□□□□□ -0.9
VPS35-210ENST00000568784 A0A1W2PNM2 257 aa9.42□□□□□ -0.9
VPS35-210ENST00000568784 KCNQ1DNQ9H478 68 aa9.41□□□□□ -0.9
VPS35-210ENST00000568784 KRTAP26-1Q6PEX3 210 aa9.41□□□□□ -0.9
VPS35-210ENST00000568784 FAM229BQ4G0N7 80 aa9.4□□□□□ -0.9
VPS35-210ENST00000568784 K7EQZ3 153 aa9.4□□□□□ -0.9
VPS35-210ENST00000568784 Q9BRP9 147 aa9.4□□□□□ -0.9
VPS35-210ENST00000568784 MRPL55Q7Z7F7 128 aaKnown RBP9.4□□□□□ -0.91
VPS35-210ENST00000568784 OCR1Q9BZK8 76 aa9.39□□□□□ -0.91
VPS35-210ENST00000568784 ANK3Q12955 4377 aaKnown RBP9.38□□□□□ -0.91
VPS35-210ENST00000568784 A0A087WSZ3 146 aa9.38□□□□□ -0.91
VPS35-210ENST00000568784 ATP5EP56381 51 aaPredicted RBP9.38□□□□□ -0.91
VPS35-210ENST00000568784 Q8NBF4 154 aa9.38□□□□□ -0.91
VPS35-210ENST00000568784 PRO0628Q9UI54 55 aa9.37□□□□□ -0.91
VPS35-210ENST00000568784 EPM2AB3EWF7 344 aa9.35□□□□□ -0.91
VPS35-210ENST00000568784 RPL37AP61513 92 aaKnown RBP9.35□□□□□ -0.91
VPS35-210ENST00000568784 UBE2DNLQ8IWF7 75 aa9.35□□□□□ -0.91
VPS35-210ENST00000568784 LINC00588Q9Y4M8 146 aa9.35□□□□□ -0.91
VPS35-210ENST00000568784 PSPHP1O15172 72 aa9.35□□□□□ -0.91
VPS35-210ENST00000568784 REG3GQ6UW15 175 aa9.35□□□□□ -0.91
VPS35-210ENST00000568784 IGLV1-50A0A075B6I6 118 aa9.34□□□□□ -0.91
VPS35-210ENST00000568784 LINC00476Q8WZB0 136 aa9.34□□□□□ -0.91
VPS35-210ENST00000568784 STAB2Q8WWQ8 2551 aa9.34□□□□□ -0.91
VPS35-210ENST00000568784 H3BNG1 76 aa9.34□□□□□ -0.91
VPS35-210ENST00000568784 UBE2AP49459 152 aa9.33□□□□□ -0.92
VPS35-210ENST00000568784 LINC00208Q96KT6 92 aa9.32□□□□□ -0.92
VPS35-210ENST00000568784 IGLV5-48A0A075B6I7 105 aa9.32□□□□□ -0.92
VPS35-210ENST00000568784 MP68P56378 58 aa9.31□□□□□ -0.92
VPS35-210ENST00000568784 HCG22E2RYF7 251 aa9.3□□□□□ -0.92
VPS35-210ENST00000568784 KMT2BQ9UMN6 2715 aaPredicted RBP9.3□□□□□ -0.92
VPS35-210ENST00000568784 H0Y9J4 135 aa9.29□□□□□ -0.92
VPS35-210ENST00000568784 DNAH10OSP0CZ25 163 aa9.29□□□□□ -0.92
VPS35-210ENST00000568784 DSCR10P59022 87 aa9.28□□□□□ -0.92
VPS35-210ENST00000568784 CHTF8P0CG12 524 aa9.28□□□□□ -0.92
VPS35-210ENST00000568784 WIPF1O43516 503 aa9.27□□□□□ -0.93
VPS35-210ENST00000568784 C1orf64Q8NEQ6 169 aa9.26□□□□□ -0.93
VPS35-210ENST00000568784 IGFL1Q6UW32 110 aa9.26□□□□□ -0.93
VPS35-210ENST00000568784 KRTAP24-1Q3LI83 254 aa9.24□□□□□ -0.93
VPS35-210ENST00000568784 F8WDY8 70 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms