RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 C14orf144Q96I85 54 aa13.26□□□□□ -0.29
CLN3-234ENST00000568472 TRAV23DV6A0A075B6W5 121 aa13.25□□□□□ -0.29
CLN3-234ENST00000568472 KRTAP4-16G5E9R7 235 aaPredicted RBP13.25□□□□□ -0.29
CLN3-234ENST00000568472 PRLHP81277 87 aa13.25□□□□□ -0.29
CLN3-234ENST00000568472 FAT3Q8TDW7 4589 aa13.24□□□□□ -0.29
CLN3-234ENST00000568472 LRP1Q07954 4544 aaKnown RBP13.23□□□□□ -0.29
CLN3-234ENST00000568472 HIGD1BQ9P298 99 aa13.23□□□□□ -0.29
CLN3-234ENST00000568472 HINT1P49773 126 aaPredicted RBP13.22□□□□□ -0.29
CLN3-234ENST00000568472 HIST1H4GQ99525 98 aa13.22□□□□□ -0.29
CLN3-234ENST00000568472 ZNF73O43830 326 aaPredicted RBP13.21□□□□□ -0.29
CLN3-234ENST00000568472 TRAV13-2A0A0B4J235 113 aa13.2□□□□□ -0.3
CLN3-234ENST00000568472 B5MCH6 92 aa13.19□□□□□ -0.3
CLN3-234ENST00000568472 KRTAP1-4P0C5Y4 121 aa13.19□□□□□ -0.3
CLN3-234ENST00000568472 MT1HL1P0DM35 61 aa13.19□□□□□ -0.3
CLN3-234ENST00000568472 HIGD2AQ9BW72 106 aa13.19□□□□□ -0.3
CLN3-234ENST00000568472 KRTAP10-8P60410 259 aa13.18□□□□□ -0.3
CLN3-234ENST00000568472 DMBT1Q9UGM3 2413 aaPredicted RBP13.17□□□□□ -0.3
CLN3-234ENST00000568472 A6NDN8 102 aa13.17□□□□□ -0.3
CLN3-234ENST00000568472 Q6ZRX8 168 aa13.17□□□□□ -0.3
CLN3-234ENST00000568472 A4D1N5 150 aa13.15□□□□□ -0.3
CLN3-234ENST00000568472 RPL13AP40429 203 aaKnown RBP13.15□□□□□ -0.3
CLN3-234ENST00000568472 ZNF706Q9Y5V0 76 aaPredicted RBP13.14□□□□□ -0.31
CLN3-234ENST00000568472 TAL2Q16559 108 aa13.13□□□□□ -0.31
CLN3-234ENST00000568472 C2orf91Q6ZV80 131 aa13.13□□□□□ -0.31
CLN3-234ENST00000568472 FAM229BQ4G0N7 80 aa13.12□□□□□ -0.31
CLN3-234ENST00000568472 SMCR5Q8TEV8 140 aa13.12□□□□□ -0.31
CLN3-234ENST00000568472 TRBV7-6A0A0J9YX20 115 aa13.11□□□□□ -0.31
CLN3-234ENST00000568472 PRR26Q8N8Z3 221 aa13.11□□□□□ -0.31
CLN3-234ENST00000568472 CRYGAP11844 174 aa13.1□□□□□ -0.31
CLN3-234ENST00000568472 C6orf99Q4VX62 202 aa13.09□□□□□ -0.31
CLN3-234ENST00000568472 Q9BRP9 147 aa13.08□□□□□ -0.32
CLN3-234ENST00000568472 UQCR10Q9UDW1 63 aa13.08□□□□□ -0.32
CLN3-234ENST00000568472 COX7BP24311 80 aa13.07□□□□□ -0.32
CLN3-234ENST00000568472 SPRR4Q96PI1 79 aa13.07□□□□□ -0.32
CLN3-234ENST00000568472 DHRS4-AS1Q9P1J3 65 aa13.07□□□□□ -0.32
CLN3-234ENST00000568472 SMIM6P0DI80 62 aa13.06□□□□□ -0.32
CLN3-234ENST00000568472 ELOF1P60002 83 aaKnown RBP13.06□□□□□ -0.32
CLN3-234ENST00000568472 TMEM238LA0A1B0GVL6 79 aa13.05□□□□□ -0.32
CLN3-234ENST00000568472 A6NJY4 79 aa13.05□□□□□ -0.32
CLN3-234ENST00000568472 CEND1Q8N111 149 aa13.05□□□□□ -0.32
CLN3-234ENST00000568472 A0A1B0GWB2 263 aa13.04□□□□□ -0.32
CLN3-234ENST00000568472 SMIM11BQ8TCY0 68 aa13.04□□□□□ -0.32
CLN3-234ENST00000568472 TNXBP22105 4242 aa13.03□□□□□ -0.32
CLN3-234ENST00000568472 A0A087X002 238 aa13.02□□□□□ -0.33
CLN3-234ENST00000568472 ERC2-IT1O76042 136 aa13.02□□□□□ -0.33
CLN3-234ENST00000568472 VAMP3Q15836 100 aa13.02□□□□□ -0.33
CLN3-234ENST00000568472 ANAPC11Q9NYG5 84 aa13.02□□□□□ -0.33
CLN3-234ENST00000568472 HSD52Q0P140 79 aa13.01□□□□□ -0.33
CLN3-234ENST00000568472 HERC1Q15751 4861 aa13□□□□□ -0.33
CLN3-234ENST00000568472 CFC1BP0CG36 223 aa13□□□□□ -0.33
CLN3-234ENST00000568472 CFC1P0CG37 223 aa13□□□□□ -0.33
CLN3-234ENST00000568472 TYMSOSQ8TAI1 123 aa13□□□□□ -0.33
CLN3-234ENST00000568472 RAB37Q96AX2 223 aa13□□□□□ -0.33
CLN3-234ENST00000568472 C12orf57Q99622 126 aa13□□□□□ -0.33
CLN3-234ENST00000568472 A0A0B4J2C4 111 aa12.99□□□□□ -0.33
CLN3-234ENST00000568472 LINC00483Q53H64 154 aa12.99□□□□□ -0.33
CLN3-234ENST00000568472 NHP2Q9NX24 153 aaKnown RBP12.97□□□□□ -0.33
CLN3-234ENST00000568472 LOC105371267A0A1B0GV96 52 aa12.96□□□□□ -0.33
CLN3-234ENST00000568472 KRTAP13-2Q52LG2 175 aa12.96□□□□□ -0.33
CLN3-234ENST00000568472 GAGE2AQ6NT46 116 aa12.96□□□□□ -0.33
CLN3-234ENST00000568472 FXYD2P54710 66 aa12.93□□□□□ -0.34
CLN3-234ENST00000568472 BVES-AS1Q5T3Y7 98 aa12.93□□□□□ -0.34
CLN3-234ENST00000568472 PRO1854Q9UHT4 67 aa12.93□□□□□ -0.34
CLN3-234ENST00000568472 SLC25A20O43772 301 aa12.92□□□□□ -0.34
CLN3-234ENST00000568472 ST20-AS1Q8NBB2 130 aa12.9□□□□□ -0.34
CLN3-234ENST00000568472 PRO1933Q9H354 126 aa12.9□□□□□ -0.34
CLN3-234ENST00000568472 H7C2G1 150 aa12.89□□□□□ -0.35
CLN3-234ENST00000568472 SPRR1BP22528 89 aa12.89□□□□□ -0.35
CLN3-234ENST00000568472 LINC00575Q6W349 94 aa12.88□□□□□ -0.35
CLN3-234ENST00000568472 CTAG1AP78358 180 aa12.87□□□□□ -0.35
CLN3-234ENST00000568472 C3orf22Q8N5N4 141 aa12.87□□□□□ -0.35
CLN3-234ENST00000568472 TEX49A0A1B0GTD5 131 aa12.85□□□□□ -0.35
CLN3-234ENST00000568472 H0YGX0 51 aa12.85□□□□□ -0.35
CLN3-234ENST00000568472 Q1RN00 199 aa12.85□□□□□ -0.35
CLN3-234ENST00000568472 TSTD3H0UI37 97 aa12.84□□□□□ -0.35
CLN3-234ENST00000568472 SNCGO76070 127 aa12.84□□□□□ -0.35
CLN3-234ENST00000568472 SSBP3-AS1Q7Z2R9 100 aa12.84□□□□□ -0.35
CLN3-234ENST00000568472 LINC00304Q8N9R0 145 aa12.84□□□□□ -0.35
CLN3-234ENST00000568472 hADV29S1A0JD25 119 aa12.83□□□□□ -0.36
CLN3-234ENST00000568472 SPAG11AQ6PDA7 123 aa12.83□□□□□ -0.36
CLN3-234ENST00000568472 IGLV5-48A0A075B6I7 105 aa12.82□□□□□ -0.36
CLN3-234ENST00000568472 LAMTOR3Q9UHA4 124 aa12.82□□□□□ -0.36
CLN3-234ENST00000568472 IGLV9-49A0A0B4J1Y8 123 aa12.81□□□□□ -0.36
CLN3-234ENST00000568472 DEFB105AQ8NG35 78 aa12.81□□□□□ -0.36
CLN3-234ENST00000568472 M0R143 59 aa12.79□□□□□ -0.36
CLN3-234ENST00000568472 MOBPQ13875 183 aa12.79□□□□□ -0.36
CLN3-234ENST00000568472 C4orf48Q5BLP8 95 aa12.79□□□□□ -0.36
CLN3-234ENST00000568472 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.77□□□□□ -0.37
CLN3-234ENST00000568472 Q8NBF4 154 aa12.77□□□□□ -0.37
CLN3-234ENST00000568472 LINC01547P58512 204 aaPredicted RBP12.76□□□□□ -0.37
CLN3-234ENST00000568472 C9orf153Q5TBE3 101 aa12.76□□□□□ -0.37
CLN3-234ENST00000568472 K7ERJ3 54 aa12.75□□□□□ -0.37
CLN3-234ENST00000568472 TSPAN13O95857 204 aa12.75□□□□□ -0.37
CLN3-234ENST00000568472 Q6ZQY7 126 aa12.75□□□□□ -0.37
CLN3-234ENST00000568472 A0A1B0GX51 115 aa12.74□□□□□ -0.37
CLN3-234ENST00000568472 COX6CP09669 75 aa12.73□□□□□ -0.37
CLN3-234ENST00000568472 Q8N377 158 aa12.73□□□□□ -0.37
CLN3-234ENST00000568472 PPDPFLQ8WWR9 84 aa12.73□□□□□ -0.37
CLN3-234ENST00000568472 TRIAP1O43715 76 aa12.72□□□□□ -0.37
CLN3-234ENST00000568472 SPINK1P00995 79 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 204.6 ms