RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ZNF73O43830 326 aaPredicted RBP19.21■□□□□ 0.67
CTCF-203ENST00000566078 SPCS1Q9Y6A9 102 aa19.21■□□□□ 0.67
CTCF-203ENST00000566078 PRYO14603 147 aa19.19■□□□□ 0.66
CTCF-203ENST00000566078 DIRC1Q969H9 104 aa19.19■□□□□ 0.66
CTCF-203ENST00000566078 UBE2BP63146 152 aa19.18■□□□□ 0.66
CTCF-203ENST00000566078 Q6ZSA8 131 aa19.18■□□□□ 0.66
CTCF-203ENST00000566078 CLEC2BQ92478 149 aa19.17■□□□□ 0.66
CTCF-203ENST00000566078 TCL1BO95988 128 aa19.15■□□□□ 0.66
CTCF-203ENST00000566078 K7EP34 96 aa19.14■□□□□ 0.66
CTCF-203ENST00000566078 H0YGX0 51 aa19.12■□□□□ 0.65
CTCF-203ENST00000566078 TRBV20-1A0A075B6N2 111 aa19.11■□□□□ 0.65
CTCF-203ENST00000566078 KRTAP11-1Q8IUC1 163 aa19.11■□□□□ 0.65
CTCF-203ENST00000566078 REG3GQ6UW15 175 aa19.11■□□□□ 0.65
CTCF-203ENST00000566078 GTF2H5Q6ZYL4 71 aa19.1■□□□□ 0.65
CTCF-203ENST00000566078 CIRBP-AS1Q8TBR5 109 aa19.1■□□□□ 0.65
CTCF-203ENST00000566078 SCXQ7RTU7 201 aa19.09■□□□□ 0.65
CTCF-203ENST00000566078 FAM218AQ96MZ4 157 aa19.09■□□□□ 0.65
CTCF-203ENST00000566078 DYNC1H1Q14204 4646 aaKnown RBP19.09■□□□□ 0.65
CTCF-203ENST00000566078 COX7BP24311 80 aa19.08■□□□□ 0.65
CTCF-203ENST00000566078 SPRR1AP35321 89 aa19.08■□□□□ 0.65
CTCF-203ENST00000566078 ATXN8Q156A1 80 aa19.08■□□□□ 0.65
CTCF-203ENST00000566078 TRBV7-6A0A0J9YX20 115 aa19.07■□□□□ 0.64
CTCF-203ENST00000566078 LRP1BQ9NZR2 4599 aa19.07■□□□□ 0.64
CTCF-203ENST00000566078 LST1O00453 97 aa19.07■□□□□ 0.64
CTCF-203ENST00000566078 ELOF1P60002 83 aaKnown RBP19.07■□□□□ 0.64
CTCF-203ENST00000566078 HAMPP81172 84 aa19.06■□□□□ 0.64
CTCF-203ENST00000566078 ETDCA0A1B0GVM5 59 aa19.04■□□□□ 0.64
CTCF-203ENST00000566078 KRTAP4-16G5E9R7 235 aaPredicted RBP19.04■□□□□ 0.64
CTCF-203ENST00000566078 H3BMG7 143 aa19.04■□□□□ 0.64
CTCF-203ENST00000566078 B5MCH6 92 aa19■□□□□ 0.63
CTCF-203ENST00000566078 UBE2V1Q13404 147 aa19■□□□□ 0.63
CTCF-203ENST00000566078 LINC00575Q6W349 94 aa19■□□□□ 0.63
CTCF-203ENST00000566078 LINC00528Q8N1L1 170 aa19■□□□□ 0.63
CTCF-203ENST00000566078 Q6ZRX8 168 aa18.97■□□□□ 0.63
CTCF-203ENST00000566078 FAM19A1Q7Z5A9 133 aa18.96■□□□□ 0.63
CTCF-203ENST00000566078 TRACP01848 142 aa18.96■□□□□ 0.63
CTCF-203ENST00000566078 A0A1B0GX51 115 aa18.93■□□□□ 0.62
CTCF-203ENST00000566078 hADV29S1A0JD25 119 aa18.93■□□□□ 0.62
CTCF-203ENST00000566078 SLC25A20O43772 301 aa18.93■□□□□ 0.62
CTCF-203ENST00000566078 MTURNQ8N3F0 131 aa18.92■□□□□ 0.62
CTCF-203ENST00000566078 PSORS1C2Q9UIG4 136 aa18.92■□□□□ 0.62
CTCF-203ENST00000566078 DNAL4O96015 105 aa18.92■□□□□ 0.62
CTCF-203ENST00000566078 BCE1O60756 84 aa18.91■□□□□ 0.62
CTCF-203ENST00000566078 SNCGO76070 127 aa18.91■□□□□ 0.62
CTCF-203ENST00000566078 PRLHP81277 87 aa18.91■□□□□ 0.62
CTCF-203ENST00000566078 C9JAW5 83 aa18.9■□□□□ 0.62
CTCF-203ENST00000566078 Q9BRP9 147 aa18.89■□□□□ 0.62
CTCF-203ENST00000566078 DHRS4-AS1Q9P1J3 65 aa18.87■□□□□ 0.61
CTCF-203ENST00000566078 INAFM2P0DMQ5 153 aa18.86■□□□□ 0.61
CTCF-203ENST00000566078 UBE2AP49459 152 aa18.86■□□□□ 0.61
CTCF-203ENST00000566078 APOBP04114 4563 aaKnown RBP18.86■□□□□ 0.61
CTCF-203ENST00000566078 C1orf137Q5JT78 98 aa18.85■□□□□ 0.61
CTCF-203ENST00000566078 PRO0461Q9UI25 63 aa18.84■□□□□ 0.61
CTCF-203ENST00000566078 XGP55808 180 aa18.83■□□□□ 0.61
CTCF-203ENST00000566078 SMCR5Q8TEV8 140 aa18.82■□□□□ 0.6
CTCF-203ENST00000566078 H0Y9J4 135 aa18.82■□□□□ 0.6
CTCF-203ENST00000566078 Q6ZQY7 126 aa18.81■□□□□ 0.6
CTCF-203ENST00000566078 KRTAP13-1Q8IUC0 172 aa18.79■□□□□ 0.6
CTCF-203ENST00000566078 HIGD2AQ9BW72 106 aa18.79■□□□□ 0.6
CTCF-203ENST00000566078 ORMDL1Q9P0S3 153 aa18.78■□□□□ 0.6
CTCF-203ENST00000566078 F8W1H4 67 aa18.78■□□□□ 0.6
CTCF-203ENST00000566078 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP18.78■□□□□ 0.6
CTCF-203ENST00000566078 ERC2-IT1O76042 136 aa18.77■□□□□ 0.6
CTCF-203ENST00000566078 SMCPP49901 116 aaPredicted RBP18.77■□□□□ 0.6
CTCF-203ENST00000566078 BAALC-AS2P0C853 105 aa18.74■□□□□ 0.59
CTCF-203ENST00000566078 H3BT86 120 aa18.74■□□□□ 0.59
CTCF-203ENST00000566078 ANKRD29Q8N6D5 301 aa18.73■□□□□ 0.59
CTCF-203ENST00000566078 IGLV7-43P04211 117 aa18.71■□□□□ 0.58
CTCF-203ENST00000566078 ST20-AS1Q8NBB2 130 aa18.69■□□□□ 0.58
CTCF-203ENST00000566078 OCIAD2Q56VL3 154 aa18.68■□□□□ 0.58
CTCF-203ENST00000566078 VPS13BQ7Z7G8 4022 aa18.68■□□□□ 0.58
CTCF-203ENST00000566078 ZNF861PO60384 105 aa18.67■□□□□ 0.58
CTCF-203ENST00000566078 EPPK1P58107 5090 aaKnown RBP18.67■□□□□ 0.58
CTCF-203ENST00000566078 SRRM2Q9UQ35 2752 aaKnown RBP18.67■□□□□ 0.58
CTCF-203ENST00000566078 SMR3BP02814 79 aaPredicted RBP18.67■□□□□ 0.58
CTCF-203ENST00000566078 DEFB105AQ8NG35 78 aa18.65■□□□□ 0.58
CTCF-203ENST00000566078 TMEM256-PLSCR3K7ERE1 68 aa18.64■□□□□ 0.57
CTCF-203ENST00000566078 LINC01600Q96MT4 127 aa18.64■□□□□ 0.57
CTCF-203ENST00000566078 GHRHP01286 108 aa18.63■□□□□ 0.57
CTCF-203ENST00000566078 H3BQ85 93 aa18.62■□□□□ 0.57
CTCF-203ENST00000566078 LINC01547P58512 204 aaPredicted RBP18.62■□□□□ 0.57
CTCF-203ENST00000566078 RPL37AP61513 92 aaKnown RBP18.61■□□□□ 0.57
CTCF-203ENST00000566078 IGLV5-48A0A075B6I7 105 aa18.6■□□□□ 0.57
CTCF-203ENST00000566078 CDK2AP2O75956 126 aa18.59■□□□□ 0.57
CTCF-203ENST00000566078 ETDBQ3ZM63 59 aa18.59■□□□□ 0.57
CTCF-203ENST00000566078 Q8N377 158 aa18.58■□□□□ 0.56
CTCF-203ENST00000566078 PPDPFLQ8WWR9 84 aa18.56■□□□□ 0.56
CTCF-203ENST00000566078 TEN1Q86WV5 123 aa18.54■□□□□ 0.56
CTCF-203ENST00000566078 TEX49A0A1B0GTD5 131 aa18.53■□□□□ 0.56
CTCF-203ENST00000566078 LAMTOR3Q9UHA4 124 aa18.52■□□□□ 0.55
CTCF-203ENST00000566078 RYR1P21817 5038 aa18.52■□□□□ 0.55
CTCF-203ENST00000566078 A0A1B0GV72 72 aa18.51■□□□□ 0.55
CTCF-203ENST00000566078 GAGE2AQ6NT46 116 aa18.51■□□□□ 0.55
CTCF-203ENST00000566078 ZNF706Q9Y5V0 76 aaPredicted RBP18.5■□□□□ 0.55
CTCF-203ENST00000566078 SPRR4Q96PI1 79 aa18.49■□□□□ 0.55
CTCF-203ENST00000566078 C3orf22Q8N5N4 141 aa18.49■□□□□ 0.55
CTCF-203ENST00000566078 HSPG2P98160 4391 aa18.48■□□□□ 0.55
CTCF-203ENST00000566078 NDUFV3P56181 108 aaKnown RBP18.47■□□□□ 0.55
CTCF-203ENST00000566078 FAT1Q14517 4588 aa18.47■□□□□ 0.55
CTCF-203ENST00000566078 SPRR1BP22528 89 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms