RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 ZNF815PA8K554 130 aa10.57□□□□□ -0.72
CLN3-221ENST00000566057 TIMM17BO60830 172 aa10.57□□□□□ -0.72
CLN3-221ENST00000566057 LINC00483Q53H64 154 aa10.57□□□□□ -0.72
CLN3-221ENST00000566057 Q6ZRX8 168 aa10.57□□□□□ -0.72
CLN3-221ENST00000566057 TRAV23DV6A0A075B6W5 121 aa10.56□□□□□ -0.72
CLN3-221ENST00000566057 GAGE2AQ6NT46 116 aa10.56□□□□□ -0.72
CLN3-221ENST00000566057 CTAG1AP78358 180 aa10.55□□□□□ -0.72
CLN3-221ENST00000566057 ZNF73O43830 326 aaPredicted RBP10.54□□□□□ -0.72
CLN3-221ENST00000566057 Q8NBF4 154 aa10.54□□□□□ -0.72
CLN3-221ENST00000566057 SPAG11AQ6PDA7 123 aa10.53□□□□□ -0.72
CLN3-221ENST00000566057 SPANXCQ9NY87 97 aa10.53□□□□□ -0.72
CLN3-221ENST00000566057 ANKRD39Q53RE8 183 aa10.52□□□□□ -0.73
CLN3-221ENST00000566057 ATOH7Q8N100 152 aa10.51□□□□□ -0.73
CLN3-221ENST00000566057 C4orf48Q5BLP8 95 aa10.5□□□□□ -0.73
CLN3-221ENST00000566057 OR13C6PQ8NH95 151 aa10.5□□□□□ -0.73
CLN3-221ENST00000566057 IGLV7-46A0A075B6I9 117 aa10.49□□□□□ -0.73
CLN3-221ENST00000566057 C20orf202A1L168 122 aa10.49□□□□□ -0.73
CLN3-221ENST00000566057 JOSD1Q15040 202 aaPredicted RBP10.49□□□□□ -0.73
CLN3-221ENST00000566057 IGLV9-49A0A0B4J1Y8 123 aa10.48□□□□□ -0.73
CLN3-221ENST00000566057 MUC2Q02817 5179 aa10.48□□□□□ -0.73
CLN3-221ENST00000566057 MOBPQ13875 183 aa10.47□□□□□ -0.73
CLN3-221ENST00000566057 ST20-AS1Q8NBB2 130 aa10.47□□□□□ -0.73
CLN3-221ENST00000566057 SCGB1D4Q6XE38 83 aa10.46□□□□□ -0.73
CLN3-221ENST00000566057 SPANXDQ9BXN6 97 aa10.46□□□□□ -0.73
CLN3-221ENST00000566057 CBY1Q9Y3M2 126 aa10.46□□□□□ -0.73
CLN3-221ENST00000566057 TPRXLQ17RH7 258 aa10.45□□□□□ -0.74
CLN3-221ENST00000566057 PCP2Q8IVA1 136 aa10.45□□□□□ -0.74
CLN3-221ENST00000566057 SPINK1P00995 79 aa10.44□□□□□ -0.74
CLN3-221ENST00000566057 HINT1P49773 126 aaPredicted RBP10.44□□□□□ -0.74
CLN3-221ENST00000566057 SSBP3-AS1Q7Z2R9 100 aa10.44□□□□□ -0.74
CLN3-221ENST00000566057 LINC00518Q8N0U6 118 aa10.44□□□□□ -0.74
CLN3-221ENST00000566057 HIST3H2BBQ8N257 126 aa10.43□□□□□ -0.74
CLN3-221ENST00000566057 S100A1P23297 94 aa10.41□□□□□ -0.74
CLN3-221ENST00000566057 HIST1H2BLQ99880 126 aa10.41□□□□□ -0.74
CLN3-221ENST00000566057 CDIP1Q9H305 208 aa10.41□□□□□ -0.74
CLN3-221ENST00000566057 C5orf52A6NGY3 159 aa10.4□□□□□ -0.74
CLN3-221ENST00000566057 C6orf99Q4VX62 202 aa10.4□□□□□ -0.74
CLN3-221ENST00000566057 IFITM1P13164 125 aa10.39□□□□□ -0.75
CLN3-221ENST00000566057 AKR1D1P51857 326 aa10.39□□□□□ -0.75
CLN3-221ENST00000566057 ELOF1P60002 83 aaKnown RBP10.39□□□□□ -0.75
CLN3-221ENST00000566057 MUSTN1Q8IVN3 82 aa10.39□□□□□ -0.75
CLN3-221ENST00000566057 COX7BP24311 80 aa10.38□□□□□ -0.75
CLN3-221ENST00000566057 C9orf153Q5TBE3 101 aa10.38□□□□□ -0.75
CLN3-221ENST00000566057 FP248Q71RG6 208 aaPredicted RBP10.38□□□□□ -0.75
CLN3-221ENST00000566057 DHRS4-AS1Q9P1J3 65 aa10.38□□□□□ -0.75
CLN3-221ENST00000566057 S100A2P29034 98 aa10.37□□□□□ -0.75
CLN3-221ENST00000566057 Q6ZVH6 145 aa10.37□□□□□ -0.75
CLN3-221ENST00000566057 COPS9Q8WXC6 57 aa10.37□□□□□ -0.75
CLN3-221ENST00000566057 SPRR1BP22528 89 aa10.36□□□□□ -0.75
CLN3-221ENST00000566057 SNRPEP62304 92 aaKnown RBP10.36□□□□□ -0.75
CLN3-221ENST00000566057 Q8N377 158 aa10.36□□□□□ -0.75
CLN3-221ENST00000566057 MUC17Q685J3 4493 aa10.35□□□□□ -0.75
CLN3-221ENST00000566057 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
CLN3-221ENST00000566057 A6NDN8 102 aa10.33□□□□□ -0.76
CLN3-221ENST00000566057 KRTAP13-3Q3SY46 172 aa10.33□□□□□ -0.76
CLN3-221ENST00000566057 TRBV7-6A0A0J9YX20 115 aa10.32□□□□□ -0.76
CLN3-221ENST00000566057 S100A6P06703 90 aa10.31□□□□□ -0.76
CLN3-221ENST00000566057 SLC25A20O43772 301 aa10.3□□□□□ -0.76
CLN3-221ENST00000566057 DEFB105AQ8NG35 78 aa10.3□□□□□ -0.76
CLN3-221ENST00000566057 A0A1B0GWB2 263 aa10.28□□□□□ -0.76
CLN3-221ENST00000566057 HSBP1L1C9JCN9 74 aa10.28□□□□□ -0.76
CLN3-221ENST00000566057 TAL2Q16559 108 aa10.28□□□□□ -0.76
CLN3-221ENST00000566057 SLC25A34Q6PIV7 304 aa10.28□□□□□ -0.76
CLN3-221ENST00000566057 LAMTOR3Q9UHA4 124 aa10.28□□□□□ -0.76
CLN3-221ENST00000566057 Q1RN00 199 aa10.27□□□□□ -0.77
CLN3-221ENST00000566057 SMIM11BQ8TCY0 68 aa10.27□□□□□ -0.77
CLN3-221ENST00000566057 TRAV13-2A0A0B4J235 113 aa10.26□□□□□ -0.77
CLN3-221ENST00000566057 TEX49A0A1B0GTD5 131 aa10.25□□□□□ -0.77
CLN3-221ENST00000566057 LINC01547P58512 204 aaPredicted RBP10.25□□□□□ -0.77
CLN3-221ENST00000566057 HRCT1Q6UXD1 115 aa10.25□□□□□ -0.77
CLN3-221ENST00000566057 SMIM29Q86T20 159 aa10.25□□□□□ -0.77
CLN3-221ENST00000566057 SCGB1D1O95968 90 aa10.24□□□□□ -0.77
CLN3-221ENST00000566057 IGLV5-48A0A075B6I7 105 aa10.22□□□□□ -0.77
CLN3-221ENST00000566057 A0A0U1RQV1 116 aa10.22□□□□□ -0.77
CLN3-221ENST00000566057 A4D1N5 150 aa10.22□□□□□ -0.77
CLN3-221ENST00000566057 PRO1933Q9H354 126 aa10.19□□□□□ -0.78
CLN3-221ENST00000566057 FAT4Q6V0I7 4981 aa10.18□□□□□ -0.78
CLN3-221ENST00000566057 A0A0G2JQZ4 141 aa10.17□□□□□ -0.78
CLN3-221ENST00000566057 ASB16-AS1Q495Z4 193 aa10.17□□□□□ -0.78
CLN3-221ENST00000566057 COX8AP10176 69 aa10.16□□□□□ -0.78
CLN3-221ENST00000566057 CD164Q04900 197 aa10.16□□□□□ -0.78
CLN3-221ENST00000566057 LIMD2Q9BT23 127 aa10.16□□□□□ -0.78
CLN3-221ENST00000566057 NHP2Q9NX24 153 aaKnown RBP10.16□□□□□ -0.78
CLN3-221ENST00000566057 H7C2G1 150 aa10.14□□□□□ -0.79
CLN3-221ENST00000566057 VAMP3Q15836 100 aa10.14□□□□□ -0.79
CLN3-221ENST00000566057 LINC00575Q6W349 94 aa10.14□□□□□ -0.79
CLN3-221ENST00000566057 HIST1H4GQ99525 98 aa10.14□□□□□ -0.79
CLN3-221ENST00000566057 C12orf57Q99622 126 aa10.14□□□□□ -0.79
CLN3-221ENST00000566057 KRTAP4-1Q9BYQ7 146 aa10.13□□□□□ -0.79
CLN3-221ENST00000566057 XP32Q5T750 250 aa10.12□□□□□ -0.79
CLN3-221ENST00000566057 LCE2AQ5TA79 106 aaPredicted RBP10.12□□□□□ -0.79
CLN3-221ENST00000566057 DLEU1O43261 78 aa10.11□□□□□ -0.79
CLN3-221ENST00000566057 C14orf144Q96I85 54 aa10.11□□□□□ -0.79
CLN3-221ENST00000566057 SEC61BP60468 96 aaKnown RBP10.1□□□□□ -0.79
CLN3-221ENST00000566057 hADV29S1A0JD25 119 aa10.09□□□□□ -0.79
CLN3-221ENST00000566057 Q5XG85 94 aa10.08□□□□□ -0.8
CLN3-221ENST00000566057 Q6ZQY7 126 aa10.08□□□□□ -0.8
CLN3-221ENST00000566057 PAM16Q9Y3D7 125 aa10.08□□□□□ -0.8
CLN3-221ENST00000566057 SPATA45Q537H7 98 aa10.07□□□□□ -0.8
CLN3-221ENST00000566057 C9orf92A6NGG3 77 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms