RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 TRAV23DV6A0A075B6W5 121 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 FAM229BQ4G0N7 80 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 Q6ZRX8 168 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 MUSTN1Q8IVN3 82 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 C3orf22Q8N5N4 141 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 MIEN1Q9BRT3 115 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 HIGD2AQ9BW72 106 aa5.75□□□□□ -1.49
CLN3-220ENST00000566040 AKR1D1P51857 326 aa5.74□□□□□ -1.49
CLN3-220ENST00000566040 JOSD1Q15040 202 aaPredicted RBP5.74□□□□□ -1.49
CLN3-220ENST00000566040 ZNF73O43830 326 aaPredicted RBP5.73□□□□□ -1.49
CLN3-220ENST00000566040 SCGB1D1O95968 90 aa5.73□□□□□ -1.49
CLN3-220ENST00000566040 LINC00483Q53H64 154 aa5.73□□□□□ -1.49
CLN3-220ENST00000566040 PYY3Q5JQD4 70 aa5.73□□□□□ -1.49
CLN3-220ENST00000566040 SCGB1D4Q6XE38 83 aa5.73□□□□□ -1.49
CLN3-220ENST00000566040 C2orf91Q6ZV80 131 aa5.73□□□□□ -1.49
CLN3-220ENST00000566040 ETDCA0A1B0GVM5 59 aa5.72□□□□□ -1.49
CLN3-220ENST00000566040 COX8AP10176 69 aa5.72□□□□□ -1.49
CLN3-220ENST00000566040 CRYGAP11844 174 aa5.72□□□□□ -1.49
CLN3-220ENST00000566040 IFITM1P13164 125 aa5.72□□□□□ -1.49
CLN3-220ENST00000566040 RPL13AP40429 203 aaKnown RBP5.72□□□□□ -1.49
CLN3-220ENST00000566040 DLEU1O43261 78 aa5.71□□□□□ -1.5
CLN3-220ENST00000566040 S100A7L2Q5SY68 101 aa5.71□□□□□ -1.5
CLN3-220ENST00000566040 Q6ZVH6 145 aa5.71□□□□□ -1.5
CLN3-220ENST00000566040 ST20-AS1Q8NBB2 130 aa5.7□□□□□ -1.5
CLN3-220ENST00000566040 TMA7Q9Y2S6 64 aaKnown RBP5.7□□□□□ -1.5
CLN3-220ENST00000566040 PAM16Q9Y3D7 125 aa5.7□□□□□ -1.5
CLN3-220ENST00000566040 ELOF1P60002 83 aaKnown RBP5.69□□□□□ -1.5
CLN3-220ENST00000566040 LCE2DQ5TA82 110 aaPredicted RBP5.69□□□□□ -1.5
CLN3-220ENST00000566040 TYMSOSQ8TAI1 123 aa5.69□□□□□ -1.5
CLN3-220ENST00000566040 C14orf144Q96I85 54 aa5.69□□□□□ -1.5
CLN3-220ENST00000566040 KRTAP3-3Q9BYR6 98 aa5.69□□□□□ -1.5
CLN3-220ENST00000566040 KRTAP3-2Q9BYR7 98 aa5.69□□□□□ -1.5
CLN3-220ENST00000566040 A4D1N5 150 aa5.68□□□□□ -1.5
CLN3-220ENST00000566040 C6orf99Q4VX62 202 aa5.68□□□□□ -1.5
CLN3-220ENST00000566040 SPATA45Q537H7 98 aa5.68□□□□□ -1.5
CLN3-220ENST00000566040 RNF213Q63HN8 5207 aa5.68□□□□□ -1.5
CLN3-220ENST00000566040 HSBP1L1C9JCN9 74 aa5.67□□□□□ -1.5
CLN3-220ENST00000566040 LINC01547P58512 204 aaPredicted RBP5.67□□□□□ -1.5
CLN3-220ENST00000566040 LINC00518Q8N0U6 118 aa5.67□□□□□ -1.5
CLN3-220ENST00000566040 OR13C6PQ8NH95 151 aa5.67□□□□□ -1.5
CLN3-220ENST00000566040 SPRR1BP22528 89 aa5.66□□□□□ -1.5
CLN3-220ENST00000566040 SMIM11BQ8TCY0 68 aa5.66□□□□□ -1.5
CLN3-220ENST00000566040 VAMP8Q9BV40 100 aa5.66□□□□□ -1.5
CLN3-220ENST00000566040 HIGD1BQ9P298 99 aa5.66□□□□□ -1.5
CLN3-220ENST00000566040 TRBV7-6A0A0J9YX20 115 aa5.65□□□□□ -1.5
CLN3-220ENST00000566040 TSPAN13O95857 204 aa5.65□□□□□ -1.5
CLN3-220ENST00000566040 GAGE2AQ6NT46 116 aa5.65□□□□□ -1.5
CLN3-220ENST00000566040 LINC00304Q8N9R0 145 aa5.65□□□□□ -1.5
CLN3-220ENST00000566040 A6NJY4 79 aa5.64□□□□□ -1.51
CLN3-220ENST00000566040 COX7BP24311 80 aa5.64□□□□□ -1.51
CLN3-220ENST00000566040 C12orf57Q99622 126 aa5.64□□□□□ -1.51
CLN3-220ENST00000566040 ZNF706Q9Y5V0 76 aaPredicted RBP5.64□□□□□ -1.51
CLN3-220ENST00000566040 SMIM29Q86T20 159 aa5.63□□□□□ -1.51
CLN3-220ENST00000566040 Q8NBF4 154 aa5.63□□□□□ -1.51
CLN3-220ENST00000566040 MUC17Q685J3 4493 aa5.63□□□□□ -1.51
CLN3-220ENST00000566040 A6NDN8 102 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 CFC1BP0CG36 223 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 CFC1P0CG37 223 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 S100A12P80511 92 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 MOBPQ13875 183 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 SLC25A34Q6PIV7 304 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 COPS9Q8WXC6 57 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 RETNLBQ9BQ08 111 aa5.62□□□□□ -1.51
CLN3-220ENST00000566040 IGLV5-48A0A075B6I7 105 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 TRAV13-2A0A0B4J235 113 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 A0A1B0GWB2 263 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 FXYD2P54710 66 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 HIST1H4GQ99525 98 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 DHRS4-AS1Q9P1J3 65 aa5.61□□□□□ -1.51
CLN3-220ENST00000566040 IGLV9-49A0A0B4J1Y8 123 aa5.6□□□□□ -1.51
CLN3-220ENST00000566040 CBY1Q9Y3M2 126 aa5.6□□□□□ -1.51
CLN3-220ENST00000566040 LINC00575Q6W349 94 aa5.58□□□□□ -1.52
CLN3-220ENST00000566040 CEND1Q8N111 149 aa5.58□□□□□ -1.52
CLN3-220ENST00000566040 Q8N377 158 aa5.58□□□□□ -1.52
CLN3-220ENST00000566040 A0A0B4J2C4 111 aa5.57□□□□□ -1.52
CLN3-220ENST00000566040 A0A0G2JQZ4 141 aa5.57□□□□□ -1.52
CLN3-220ENST00000566040 CTAG1AP78358 180 aa5.57□□□□□ -1.52
CLN3-220ENST00000566040 TAL2Q16559 108 aa5.57□□□□□ -1.52
CLN3-220ENST00000566040 FAM218AQ96MZ4 157 aa5.57□□□□□ -1.52
CLN3-220ENST00000566040 PRR4Q16378 134 aa5.56□□□□□ -1.52
CLN3-220ENST00000566040 SSBP3-AS1Q7Z2R9 100 aa5.56□□□□□ -1.52
CLN3-220ENST00000566040 HINT1P49773 126 aaPredicted RBP5.55□□□□□ -1.52
CLN3-220ENST00000566040 MUC2Q02817 5179 aa5.54□□□□□ -1.52
CLN3-220ENST00000566040 LOC105371267A0A1B0GV96 52 aa5.54□□□□□ -1.52
CLN3-220ENST00000566040 K7ERJ3 54 aa5.54□□□□□ -1.52
CLN3-220ENST00000566040 Q1RN00 199 aa5.54□□□□□ -1.52
CLN3-220ENST00000566040 SPAG11AQ6PDA7 123 aa5.54□□□□□ -1.52
CLN3-220ENST00000566040 TEX49A0A1B0GTD5 131 aa5.53□□□□□ -1.52
CLN3-220ENST00000566040 RPS29P62273 56 aaKnown RBP5.53□□□□□ -1.52
CLN3-220ENST00000566040 HSD52Q0P140 79 aa5.53□□□□□ -1.52
CLN3-220ENST00000566040 C9orf153Q5TBE3 101 aa5.53□□□□□ -1.52
CLN3-220ENST00000566040 Q6ZQY7 126 aa5.53□□□□□ -1.52
CLN3-220ENST00000566040 DEFB105AQ8NG35 78 aa5.53□□□□□ -1.52
CLN3-220ENST00000566040 H7C2G1 150 aa5.52□□□□□ -1.53
CLN3-220ENST00000566040 SPINK1P00995 79 aa5.52□□□□□ -1.53
CLN3-220ENST00000566040 UQCR10Q9UDW1 63 aa5.52□□□□□ -1.53
CLN3-220ENST00000566040 TPRXLQ17RH7 258 aa5.51□□□□□ -1.53
CLN3-220ENST00000566040 PRO1933Q9H354 126 aa5.51□□□□□ -1.53
CLN3-220ENST00000566040 IGLV8-61A0A075B6I0 122 aa5.5□□□□□ -1.53
CLN3-220ENST00000566040 hADV29S1A0JD25 119 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms