RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LINC00483Q53H64 154 aa11.89□□□□□ -0.51
CLN3-219ENST00000565778 Q6ZRX8 168 aa11.89□□□□□ -0.51
CLN3-219ENST00000565778 Q9BRP9 147 aa11.89□□□□□ -0.51
CLN3-219ENST00000565778 JOSD1Q15040 202 aaPredicted RBP11.87□□□□□ -0.51
CLN3-219ENST00000565778 CDIP1Q9H305 208 aa11.87□□□□□ -0.51
CLN3-219ENST00000565778 IGLV9-49A0A0B4J1Y8 123 aa11.86□□□□□ -0.51
CLN3-219ENST00000565778 C3orf79P0CE67 100 aa11.86□□□□□ -0.51
CLN3-219ENST00000565778 LINC00308Q8TCZ7 52 aa11.86□□□□□ -0.51
CLN3-219ENST00000565778 ZNF815PA8K554 130 aa11.85□□□□□ -0.51
CLN3-219ENST00000565778 ZNF73O43830 326 aaPredicted RBP11.85□□□□□ -0.51
CLN3-219ENST00000565778 HINT1P49773 126 aaPredicted RBP11.85□□□□□ -0.51
CLN3-219ENST00000565778 OR13C6PQ8NH95 151 aa11.85□□□□□ -0.51
CLN3-219ENST00000565778 CBY1Q9Y3M2 126 aa11.85□□□□□ -0.51
CLN3-219ENST00000565778 TIMM17BO60830 172 aa11.84□□□□□ -0.51
CLN3-219ENST00000565778 KRTDAPP60985 99 aa11.84□□□□□ -0.51
CLN3-219ENST00000565778 TPRXLQ17RH7 258 aa11.84□□□□□ -0.51
CLN3-219ENST00000565778 LITAFQ99732 161 aa11.84□□□□□ -0.51
CLN3-219ENST00000565778 SPINK1P00995 79 aa11.83□□□□□ -0.52
CLN3-219ENST00000565778 MOBPQ13875 183 aa11.83□□□□□ -0.52
CLN3-219ENST00000565778 SSBP3-AS1Q7Z2R9 100 aa11.83□□□□□ -0.52
CLN3-219ENST00000565778 SPANXCQ9NY87 97 aa11.83□□□□□ -0.52
CLN3-219ENST00000565778 COA6Q5JTJ3 125 aaKnown RBP11.82□□□□□ -0.52
CLN3-219ENST00000565778 TTTY13Q9BZ97 58 aa11.82□□□□□ -0.52
CLN3-219ENST00000565778 MUC2Q02817 5179 aa11.78□□□□□ -0.52
CLN3-219ENST00000565778 FP248Q71RG6 208 aaPredicted RBP11.78□□□□□ -0.52
CLN3-219ENST00000565778 C20orf202A1L168 122 aa11.77□□□□□ -0.53
CLN3-219ENST00000565778 A0A0U1RQV1 116 aa11.76□□□□□ -0.53
CLN3-219ENST00000565778 LINC00518Q8N0U6 118 aa11.76□□□□□ -0.53
CLN3-219ENST00000565778 ST20-AS1Q8NBB2 130 aa11.76□□□□□ -0.53
CLN3-219ENST00000565778 SCGB1D4Q6XE38 83 aa11.75□□□□□ -0.53
CLN3-219ENST00000565778 SPANXDQ9BXN6 97 aa11.75□□□□□ -0.53
CLN3-219ENST00000565778 C9orf153Q5TBE3 101 aa11.74□□□□□ -0.53
CLN3-219ENST00000565778 C5orf52A6NGY3 159 aa11.73□□□□□ -0.53
CLN3-219ENST00000565778 ATOH7Q8N100 152 aa11.72□□□□□ -0.53
CLN3-219ENST00000565778 DHRS4-AS1Q9P1J3 65 aa11.72□□□□□ -0.53
CLN3-219ENST00000565778 ANKRD39Q53RE8 183 aa11.71□□□□□ -0.53
CLN3-219ENST00000565778 RPS29P62273 56 aaKnown RBP11.7□□□□□ -0.54
CLN3-219ENST00000565778 COX7BP24311 80 aa11.69□□□□□ -0.54
CLN3-219ENST00000565778 COPS9Q8WXC6 57 aa11.69□□□□□ -0.54
CLN3-219ENST00000565778 SLC25A20O43772 301 aa11.68□□□□□ -0.54
CLN3-219ENST00000565778 AKR1D1P51857 326 aa11.68□□□□□ -0.54
CLN3-219ENST00000565778 C6orf99Q4VX62 202 aa11.68□□□□□ -0.54
CLN3-219ENST00000565778 Q8N377 158 aa11.68□□□□□ -0.54
CLN3-219ENST00000565778 IFITM1P13164 125 aa11.67□□□□□ -0.54
CLN3-219ENST00000565778 KRTAP13-3Q3SY46 172 aa11.66□□□□□ -0.54
CLN3-219ENST00000565778 SLC25A34Q6PIV7 304 aa11.66□□□□□ -0.54
CLN3-219ENST00000565778 ELOF1P60002 83 aaKnown RBP11.65□□□□□ -0.54
CLN3-219ENST00000565778 PCP2Q8IVA1 136 aa11.65□□□□□ -0.54
CLN3-219ENST00000565778 A6NDN8 102 aa11.64□□□□□ -0.55
CLN3-219ENST00000565778 SPRR1BP22528 89 aa11.64□□□□□ -0.55
CLN3-219ENST00000565778 TAL2Q16559 108 aa11.64□□□□□ -0.55
CLN3-219ENST00000565778 Q6ZVH6 145 aa11.64□□□□□ -0.55
CLN3-219ENST00000565778 MUSTN1Q8IVN3 82 aa11.64□□□□□ -0.55
CLN3-219ENST00000565778 DEFB105AQ8NG35 78 aa11.63□□□□□ -0.55
CLN3-219ENST00000565778 LAMTOR3Q9UHA4 124 aa11.63□□□□□ -0.55
CLN3-219ENST00000565778 SNRPEP62304 92 aaKnown RBP11.61□□□□□ -0.55
CLN3-219ENST00000565778 TRBV7-6A0A0J9YX20 115 aa11.6□□□□□ -0.55
CLN3-219ENST00000565778 S100A2P29034 98 aa11.6□□□□□ -0.55
CLN3-219ENST00000565778 HRCT1Q6UXD1 115 aa11.59□□□□□ -0.55
CLN3-219ENST00000565778 HIST3H2BBQ8N257 126 aa11.58□□□□□ -0.56
CLN3-219ENST00000565778 MUC17Q685J3 4493 aa11.58□□□□□ -0.56
CLN3-219ENST00000565778 A0A1B0GWB2 263 aa11.57□□□□□ -0.56
CLN3-219ENST00000565778 TEX49A0A1B0GTD5 131 aa11.56□□□□□ -0.56
CLN3-219ENST00000565778 Q1RN00 199 aa11.56□□□□□ -0.56
CLN3-219ENST00000565778 HIST1H2BLQ99880 126 aa11.56□□□□□ -0.56
CLN3-219ENST00000565778 TRAV13-2A0A0B4J235 113 aa11.55□□□□□ -0.56
CLN3-219ENST00000565778 HSBP1L1C9JCN9 74 aa11.54□□□□□ -0.56
CLN3-219ENST00000565778 S100A1P23297 94 aa11.54□□□□□ -0.56
CLN3-219ENST00000565778 ASB16-AS1Q495Z4 193 aa11.53□□□□□ -0.56
CLN3-219ENST00000565778 LIMD2Q9BT23 127 aa11.53□□□□□ -0.56
CLN3-219ENST00000565778 S100A6P06703 90 aa11.52□□□□□ -0.57
CLN3-219ENST00000565778 SEC61BP60468 96 aaKnown RBP11.52□□□□□ -0.57
CLN3-219ENST00000565778 PRO1933Q9H354 126 aa11.52□□□□□ -0.57
CLN3-219ENST00000565778 A4D1N5 150 aa11.51□□□□□ -0.57
CLN3-219ENST00000565778 SMIM11BQ8TCY0 68 aa11.51□□□□□ -0.57
CLN3-219ENST00000565778 SMIM29Q86T20 159 aa11.48□□□□□ -0.57
CLN3-219ENST00000565778 NHP2Q9NX24 153 aaKnown RBP11.48□□□□□ -0.57
CLN3-219ENST00000565778 LINC01547P58512 204 aaPredicted RBP11.47□□□□□ -0.57
CLN3-219ENST00000565778 IGLV5-48A0A075B6I7 105 aa11.46□□□□□ -0.57
CLN3-219ENST00000565778 H7C2G1 150 aa11.46□□□□□ -0.57
CLN3-219ENST00000565778 CD164Q04900 197 aa11.46□□□□□ -0.57
CLN3-219ENST00000565778 VAMP3Q15836 100 aa11.46□□□□□ -0.57
CLN3-219ENST00000565778 LCE2AQ5TA79 106 aaPredicted RBP11.46□□□□□ -0.57
CLN3-219ENST00000565778 FAT4Q6V0I7 4981 aa11.45□□□□□ -0.58
CLN3-219ENST00000565778 XP32Q5T750 250 aa11.44□□□□□ -0.58
CLN3-219ENST00000565778 SCGB1D1O95968 90 aa11.43□□□□□ -0.58
CLN3-219ENST00000565778 A0A0G2JQZ4 141 aa11.41□□□□□ -0.58
CLN3-219ENST00000565778 KRTAP4-1Q9BYQ7 146 aa11.4□□□□□ -0.58
CLN3-219ENST00000565778 C9orf92A6NGG3 77 aa11.38□□□□□ -0.59
CLN3-219ENST00000565778 LINC00575Q6W349 94 aa11.38□□□□□ -0.59
CLN3-219ENST00000565778 HIST1H4GQ99525 98 aa11.38□□□□□ -0.59
CLN3-219ENST00000565778 hADV29S1A0JD25 119 aa11.36□□□□□ -0.59
CLN3-219ENST00000565778 Q5XG85 94 aa11.35□□□□□ -0.59
CLN3-219ENST00000565778 F8WEM9 126 aa11.34□□□□□ -0.59
CLN3-219ENST00000565778 C12orf57Q99622 126 aa11.34□□□□□ -0.59
CLN3-219ENST00000565778 COX8AP10176 69 aa11.33□□□□□ -0.6
CLN3-219ENST00000565778 Q6ZQY7 126 aa11.33□□□□□ -0.6
CLN3-219ENST00000565778 C1orf195Q5TG92 126 aa11.32□□□□□ -0.6
CLN3-219ENST00000565778 DLEU1O43261 78 aa11.28□□□□□ -0.6
CLN3-219ENST00000565778 TCL1BO95988 128 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms