RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 Q8NBF4 154 aa8.46□□□□□ -1.06
CLN3-213ENST00000565047 COA6Q5JTJ3 125 aaKnown RBP8.44□□□□□ -1.06
CLN3-213ENST00000565047 PET117Q6UWS5 81 aa8.44□□□□□ -1.06
CLN3-213ENST00000565047 MIEN1Q9BRT3 115 aa8.44□□□□□ -1.06
CLN3-213ENST00000565047 NPC2P61916 151 aa8.43□□□□□ -1.06
CLN3-213ENST00000565047 S100A12P80511 92 aa8.43□□□□□ -1.06
CLN3-213ENST00000565047 GAGE2AQ6NT46 116 aa8.43□□□□□ -1.06
CLN3-213ENST00000565047 TRAV23DV6A0A075B6W5 121 aa8.42□□□□□ -1.06
CLN3-213ENST00000565047 TIMM17BO60830 172 aa8.42□□□□□ -1.06
CLN3-213ENST00000565047 LINC00308Q8TCZ7 52 aa8.42□□□□□ -1.06
CLN3-213ENST00000565047 ZNF73O43830 326 aaPredicted RBP8.41□□□□□ -1.06
CLN3-213ENST00000565047 SPINK1P00995 79 aa8.41□□□□□ -1.06
CLN3-213ENST00000565047 C3orf79P0CE67 100 aa8.41□□□□□ -1.06
CLN3-213ENST00000565047 S100A7L2Q5SY68 101 aa8.41□□□□□ -1.06
CLN3-213ENST00000565047 TTTY13Q9BZ97 58 aa8.41□□□□□ -1.06
CLN3-213ENST00000565047 FP248Q71RG6 208 aaPredicted RBP8.4□□□□□ -1.06
CLN3-213ENST00000565047 SSBP3-AS1Q7Z2R9 100 aa8.4□□□□□ -1.06
CLN3-213ENST00000565047 C4orf48Q5BLP8 95 aa8.39□□□□□ -1.07
CLN3-213ENST00000565047 CDIP1Q9H305 208 aa8.39□□□□□ -1.07
CLN3-213ENST00000565047 SPANXCQ9NY87 97 aa8.39□□□□□ -1.07
CLN3-213ENST00000565047 MOBPQ13875 183 aa8.38□□□□□ -1.07
CLN3-213ENST00000565047 KRTAP13-3Q3SY46 172 aa8.38□□□□□ -1.07
CLN3-213ENST00000565047 ST20-AS1Q8NBB2 130 aa8.38□□□□□ -1.07
CLN3-213ENST00000565047 IGLV9-49A0A0B4J1Y8 123 aa8.37□□□□□ -1.07
CLN3-213ENST00000565047 RPS29P62273 56 aaKnown RBP8.37□□□□□ -1.07
CLN3-213ENST00000565047 C5orf52A6NGY3 159 aa8.36□□□□□ -1.07
CLN3-213ENST00000565047 ZNF815PA8K554 130 aa8.36□□□□□ -1.07
CLN3-213ENST00000565047 JOSD1Q15040 202 aaPredicted RBP8.36□□□□□ -1.07
CLN3-213ENST00000565047 LCE2AQ5TA79 106 aaPredicted RBP8.36□□□□□ -1.07
CLN3-213ENST00000565047 Q8N377 158 aa8.36□□□□□ -1.07
CLN3-213ENST00000565047 SPRR1BP22528 89 aa8.34□□□□□ -1.07
CLN3-213ENST00000565047 KRTDAPP60985 99 aa8.33□□□□□ -1.08
CLN3-213ENST00000565047 ANKRD39Q53RE8 183 aa8.33□□□□□ -1.08
CLN3-213ENST00000565047 SPANXDQ9BXN6 97 aa8.33□□□□□ -1.08
CLN3-213ENST00000565047 CBY1Q9Y3M2 126 aa8.32□□□□□ -1.08
CLN3-213ENST00000565047 A0A0U1RQV1 116 aa8.31□□□□□ -1.08
CLN3-213ENST00000565047 ELOF1P60002 83 aaKnown RBP8.3□□□□□ -1.08
CLN3-213ENST00000565047 LINC00518Q8N0U6 118 aa8.3□□□□□ -1.08
CLN3-213ENST00000565047 OR13C6PQ8NH95 151 aa8.3□□□□□ -1.08
CLN3-213ENST00000565047 HINT1P49773 126 aaPredicted RBP8.29□□□□□ -1.08
CLN3-213ENST00000565047 DHRS4-AS1Q9P1J3 65 aa8.28□□□□□ -1.08
CLN3-213ENST00000565047 SLC25A20O43772 301 aa8.27□□□□□ -1.09
CLN3-213ENST00000565047 ASB16-AS1Q495Z4 193 aa8.27□□□□□ -1.09
CLN3-213ENST00000565047 C6orf99Q4VX62 202 aa8.27□□□□□ -1.09
CLN3-213ENST00000565047 PCP2Q8IVA1 136 aa8.27□□□□□ -1.09
CLN3-213ENST00000565047 ATOH7Q8N100 152 aa8.27□□□□□ -1.09
CLN3-213ENST00000565047 C9orf153Q5TBE3 101 aa8.26□□□□□ -1.09
CLN3-213ENST00000565047 KRTAP4-1Q9BYQ7 146 aa8.26□□□□□ -1.09
CLN3-213ENST00000565047 TMA7Q9Y2S6 64 aaKnown RBP8.26□□□□□ -1.09
CLN3-213ENST00000565047 TRBV7-6A0A0J9YX20 115 aa8.25□□□□□ -1.09
CLN3-213ENST00000565047 IFITM1P13164 125 aa8.25□□□□□ -1.09
CLN3-213ENST00000565047 COX7BP24311 80 aa8.25□□□□□ -1.09
CLN3-213ENST00000565047 C20orf202A1L168 122 aa8.24□□□□□ -1.09
CLN3-213ENST00000565047 S100A6P06703 90 aa8.24□□□□□ -1.09
CLN3-213ENST00000565047 SNRPEP62304 92 aaKnown RBP8.24□□□□□ -1.09
CLN3-213ENST00000565047 SCGB1D4Q6XE38 83 aa8.24□□□□□ -1.09
CLN3-213ENST00000565047 Q6ZVH6 145 aa8.24□□□□□ -1.09
CLN3-213ENST00000565047 MUSTN1Q8IVN3 82 aa8.24□□□□□ -1.09
CLN3-213ENST00000565047 LINC01547P58512 204 aaPredicted RBP8.23□□□□□ -1.09
CLN3-213ENST00000565047 SMIM29Q86T20 159 aa8.23□□□□□ -1.09
CLN3-213ENST00000565047 HIST3H2BBQ8N257 126 aa8.23□□□□□ -1.09
CLN3-213ENST00000565047 XP32Q5T750 250 aa8.22□□□□□ -1.09
CLN3-213ENST00000565047 AKR1D1P51857 326 aa8.21□□□□□ -1.1
CLN3-213ENST00000565047 SLC25A34Q6PIV7 304 aa8.21□□□□□ -1.1
CLN3-213ENST00000565047 HIST1H2BLQ99880 126 aa8.21□□□□□ -1.1
CLN3-213ENST00000565047 IGLV5-48A0A075B6I7 105 aa8.2□□□□□ -1.1
CLN3-213ENST00000565047 COPS9Q8WXC6 57 aa8.2□□□□□ -1.1
CLN3-213ENST00000565047 LAMTOR3Q9UHA4 124 aa8.2□□□□□ -1.1
CLN3-213ENST00000565047 A0A1B0GWB2 263 aa8.19□□□□□ -1.1
CLN3-213ENST00000565047 TEX49A0A1B0GTD5 131 aa8.18□□□□□ -1.1
CLN3-213ENST00000565047 S100A2P29034 98 aa8.18□□□□□ -1.1
CLN3-213ENST00000565047 KRTAP9-2Q9BYQ4 174 aa8.18□□□□□ -1.1
CLN3-213ENST00000565047 A6NDN8 102 aa8.17□□□□□ -1.1
CLN3-213ENST00000565047 TAL2Q16559 108 aa8.17□□□□□ -1.1
CLN3-213ENST00000565047 Q1RN00 199 aa8.17□□□□□ -1.1
CLN3-213ENST00000565047 DEFB105AQ8NG35 78 aa8.17□□□□□ -1.1
CLN3-213ENST00000565047 SMIM11BQ8TCY0 68 aa8.17□□□□□ -1.1
CLN3-213ENST00000565047 SEC61BP60468 96 aaKnown RBP8.16□□□□□ -1.1
CLN3-213ENST00000565047 CD164Q04900 197 aa8.16□□□□□ -1.1
CLN3-213ENST00000565047 HRCT1Q6UXD1 115 aa8.16□□□□□ -1.1
CLN3-213ENST00000565047 TRAV13-2A0A0B4J235 113 aa8.14□□□□□ -1.11
CLN3-213ENST00000565047 Q5XG85 94 aa8.14□□□□□ -1.11
CLN3-213ENST00000565047 PRO1933Q9H354 126 aa8.14□□□□□ -1.11
CLN3-213ENST00000565047 A4D1N5 150 aa8.13□□□□□ -1.11
CLN3-213ENST00000565047 LIMD2Q9BT23 127 aa8.13□□□□□ -1.11
CLN3-213ENST00000565047 A0A0G2JQZ4 141 aa8.12□□□□□ -1.11
CLN3-213ENST00000565047 H7C2G1 150 aa8.08□□□□□ -1.12
CLN3-213ENST00000565047 KRTAP19-2Q3LHN2 52 aa8.08□□□□□ -1.12
CLN3-213ENST00000565047 LCE2CQ5TA81 110 aa8.08□□□□□ -1.12
CLN3-213ENST00000565047 C1orf195Q5TG92 126 aa8.08□□□□□ -1.12
CLN3-213ENST00000565047 LINC00575Q6W349 94 aa8.08□□□□□ -1.12
CLN3-213ENST00000565047 KRTAP9-6A0A140TA67 174 aa8.07□□□□□ -1.12
CLN3-213ENST00000565047 NHP2Q9NX24 153 aaKnown RBP8.07□□□□□ -1.12
CLN3-213ENST00000565047 HSBP1L1C9JCN9 74 aa8.05□□□□□ -1.12
CLN3-213ENST00000565047 C9orf92A6NGG3 77 aa8.04□□□□□ -1.12
CLN3-213ENST00000565047 SCGB1D1O95968 90 aa8.04□□□□□ -1.12
CLN3-213ENST00000565047 COX8AP10176 69 aa8.03□□□□□ -1.12
CLN3-213ENST00000565047 IGLV8-61A0A075B6I0 122 aa8.02□□□□□ -1.13
CLN3-213ENST00000565047 hADV29S1A0JD25 119 aa8.02□□□□□ -1.13
CLN3-213ENST00000565047 DLEU1O43261 78 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms