RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 HIST2H2BEQ16778 126 aa6.15□□□□□ -1.42
VPS39-208ENST00000564994 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.15□□□□□ -1.42
VPS39-208ENST00000564994 Q6ZRX8 168 aa6.15□□□□□ -1.42
VPS39-208ENST00000564994 HIST1H2BHQ93079 126 aa6.15□□□□□ -1.42
VPS39-208ENST00000564994 HIST1H2BNQ99877 126 aa6.15□□□□□ -1.42
VPS39-208ENST00000564994 HIST1H2BMQ99879 126 aa6.15□□□□□ -1.42
VPS39-208ENST00000564994 SYS1-DBNDD2H3BUS1 97 aa6.14□□□□□ -1.43
VPS39-208ENST00000564994 C4orf48Q5BLP8 95 aa6.14□□□□□ -1.43
VPS39-208ENST00000564994 TRAV23DV6A0A075B6W5 121 aa6.13□□□□□ -1.43
VPS39-208ENST00000564994 S100A7L2Q5SY68 101 aa6.13□□□□□ -1.43
VPS39-208ENST00000564994 LITAFQ99732 161 aa6.13□□□□□ -1.43
VPS39-208ENST00000564994 IGLV9-49A0A0B4J1Y8 123 aa6.12□□□□□ -1.43
VPS39-208ENST00000564994 MOBPQ13875 183 aa6.12□□□□□ -1.43
VPS39-208ENST00000564994 LINC01545Q5VT33 79 aa6.12□□□□□ -1.43
VPS39-208ENST00000564994 FP248Q71RG6 208 aaPredicted RBP6.12□□□□□ -1.43
VPS39-208ENST00000564994 A0A0U1RQV1 116 aa6.11□□□□□ -1.43
VPS39-208ENST00000564994 SPINK1P00995 79 aa6.11□□□□□ -1.43
VPS39-208ENST00000564994 ZNF73O43830 326 aaPredicted RBP6.1□□□□□ -1.43
VPS39-208ENST00000564994 KRTAP13-3Q3SY46 172 aa6.1□□□□□ -1.43
VPS39-208ENST00000564994 SSBP3-AS1Q7Z2R9 100 aa6.1□□□□□ -1.43
VPS39-208ENST00000564994 ST20-AS1Q8NBB2 130 aa6.1□□□□□ -1.43
VPS39-208ENST00000564994 LINC00308Q8TCZ7 52 aa6.1□□□□□ -1.43
VPS39-208ENST00000564994 TTTY13Q9BZ97 58 aa6.1□□□□□ -1.43
VPS39-208ENST00000564994 LCE2AQ5TA79 106 aaPredicted RBP6.09□□□□□ -1.43
VPS39-208ENST00000564994 PET117Q6UWS5 81 aa6.09□□□□□ -1.43
VPS39-208ENST00000564994 TIMM17BO60830 172 aa6.08□□□□□ -1.44
VPS39-208ENST00000564994 C3orf79P0CE67 100 aa6.08□□□□□ -1.44
VPS39-208ENST00000564994 JOSD1Q15040 202 aaPredicted RBP6.08□□□□□ -1.44
VPS39-208ENST00000564994 Q8N377 158 aa6.08□□□□□ -1.44
VPS39-208ENST00000564994 SPANXCQ9NY87 97 aa6.08□□□□□ -1.44
VPS39-208ENST00000564994 ZNF815PA8K554 130 aa6.07□□□□□ -1.44
VPS39-208ENST00000564994 RPS29P62273 56 aaKnown RBP6.06□□□□□ -1.44
VPS39-208ENST00000564994 COA6Q5JTJ3 125 aaKnown RBP6.06□□□□□ -1.44
VPS39-208ENST00000564994 OR13C6PQ8NH95 151 aa6.06□□□□□ -1.44
VPS39-208ENST00000564994 KRTDAPP60985 99 aa6.05□□□□□ -1.44
VPS39-208ENST00000564994 C9orf153Q5TBE3 101 aa6.05□□□□□ -1.44
VPS39-208ENST00000564994 C5orf52A6NGY3 159 aa6.04□□□□□ -1.44
VPS39-208ENST00000564994 HINT1P49773 126 aaPredicted RBP6.04□□□□□ -1.44
VPS39-208ENST00000564994 SPANXDQ9BXN6 97 aa6.04□□□□□ -1.44
VPS39-208ENST00000564994 CBY1Q9Y3M2 126 aa6.04□□□□□ -1.44
VPS39-208ENST00000564994 SLC25A20O43772 301 aa6.03□□□□□ -1.44
VPS39-208ENST00000564994 SPRR1BP22528 89 aa6.03□□□□□ -1.44
VPS39-208ENST00000564994 ANKRD39Q53RE8 183 aa6.03□□□□□ -1.44
VPS39-208ENST00000564994 ELOF1P60002 83 aaKnown RBP6.02□□□□□ -1.45
VPS39-208ENST00000564994 ASB16-AS1Q495Z4 193 aa6.02□□□□□ -1.45
VPS39-208ENST00000564994 C6orf99Q4VX62 202 aa6.02□□□□□ -1.45
VPS39-208ENST00000564994 KRTAP4-1Q9BYQ7 146 aa6.02□□□□□ -1.45
VPS39-208ENST00000564994 DHRS4-AS1Q9P1J3 65 aa6.02□□□□□ -1.45
VPS39-208ENST00000564994 LINC00518Q8N0U6 118 aa6.01□□□□□ -1.45
VPS39-208ENST00000564994 ATOH7Q8N100 152 aa6.01□□□□□ -1.45
VPS39-208ENST00000564994 COX7BP24311 80 aa6□□□□□ -1.45
VPS39-208ENST00000564994 SCGB1D4Q6XE38 83 aa6□□□□□ -1.45
VPS39-208ENST00000564994 PCP2Q8IVA1 136 aa5.99□□□□□ -1.45
VPS39-208ENST00000564994 C20orf202A1L168 122 aa5.98□□□□□ -1.45
VPS39-208ENST00000564994 HRCT1Q6UXD1 115 aa5.98□□□□□ -1.45
VPS39-208ENST00000564994 KRTAP9-2Q9BYQ4 174 aa5.98□□□□□ -1.45
VPS39-208ENST00000564994 IFITM1P13164 125 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 SEC61BP60468 96 aaKnown RBP5.97□□□□□ -1.45
VPS39-208ENST00000564994 Q1RN00 199 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 XP32Q5T750 250 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 SLC25A34Q6PIV7 304 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 MUSTN1Q8IVN3 82 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 DEFB105AQ8NG35 78 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 LAMTOR3Q9UHA4 124 aa5.97□□□□□ -1.45
VPS39-208ENST00000564994 TRBV7-6A0A0J9YX20 115 aa5.96□□□□□ -1.46
VPS39-208ENST00000564994 LINC01547P58512 204 aaPredicted RBP5.96□□□□□ -1.46
VPS39-208ENST00000564994 TAL2Q16559 108 aa5.96□□□□□ -1.46
VPS39-208ENST00000564994 SMIM29Q86T20 159 aa5.96□□□□□ -1.46
VPS39-208ENST00000564994 TEX49A0A1B0GTD5 131 aa5.95□□□□□ -1.46
VPS39-208ENST00000564994 A6NDN8 102 aa5.95□□□□□ -1.46
VPS39-208ENST00000564994 LCE2BO14633 110 aa5.95□□□□□ -1.46
VPS39-208ENST00000564994 Q6ZVH6 145 aa5.95□□□□□ -1.46
VPS39-208ENST00000564994 A0A1B0GWB2 263 aa5.94□□□□□ -1.46
VPS39-208ENST00000564994 COPS9Q8WXC6 57 aa5.94□□□□□ -1.46
VPS39-208ENST00000564994 LIMD2Q9BT23 127 aa5.94□□□□□ -1.46
VPS39-208ENST00000564994 IGLV5-48A0A075B6I7 105 aa5.93□□□□□ -1.46
VPS39-208ENST00000564994 A0A0G2JQZ4 141 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 CD164Q04900 197 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 HIST3H2BBQ8N257 126 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 SMIM11BQ8TCY0 68 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 HIST1H2BLQ99880 126 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 PRO1933Q9H354 126 aa5.92□□□□□ -1.46
VPS39-208ENST00000564994 TMA7Q9Y2S6 64 aaKnown RBP5.92□□□□□ -1.46
VPS39-208ENST00000564994 H7C2G1 150 aa5.91□□□□□ -1.46
VPS39-208ENST00000564994 AKR1D1P51857 326 aa5.91□□□□□ -1.46
VPS39-208ENST00000564994 SNRPEP62304 92 aaKnown RBP5.91□□□□□ -1.46
VPS39-208ENST00000564994 TRAV13-2A0A0B4J235 113 aa5.9□□□□□ -1.46
VPS39-208ENST00000564994 C9orf92A6NGG3 77 aa5.9□□□□□ -1.46
VPS39-208ENST00000564994 A4D1N5 150 aa5.89□□□□□ -1.47
VPS39-208ENST00000564994 Q5XG85 94 aa5.89□□□□□ -1.47
VPS39-208ENST00000564994 S100A2P29034 98 aa5.87□□□□□ -1.47
VPS39-208ENST00000564994 PCOTHQ58A44 107 aa5.87□□□□□ -1.47
VPS39-208ENST00000564994 LCE2CQ5TA81 110 aa5.87□□□□□ -1.47
VPS39-208ENST00000564994 C1orf195Q5TG92 126 aa5.87□□□□□ -1.47
VPS39-208ENST00000564994 KRTAP19-2Q3LHN2 52 aa5.86□□□□□ -1.47
VPS39-208ENST00000564994 NHP2Q9NX24 153 aaKnown RBP5.86□□□□□ -1.47
VPS39-208ENST00000564994 HSBP1L1C9JCN9 74 aa5.85□□□□□ -1.47
VPS39-208ENST00000564994 LINC00575Q6W349 94 aa5.85□□□□□ -1.47
VPS39-208ENST00000564994 IGLV8-61A0A075B6I0 122 aa5.83□□□□□ -1.48
VPS39-208ENST00000564994 LOC105371267A0A1B0GV96 52 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 274.6 ms