RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 COX7B2Q8TF08 81 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 Q9H8V8 135 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 TOMM7Q9P0U1 55 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 CSMD3Q7Z407 3707 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 NCR3O14931 201 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 FAM229BQ4G0N7 80 aa11.82□□□□□ -0.52
GDE1-203ENST00000564172 DYNC2H1Q8NCM8 4307 aaKnown RBP11.81□□□□□ -0.52
GDE1-203ENST00000564172 A0A087WYN8 130 aa11.81□□□□□ -0.52
GDE1-203ENST00000564172 C4orf48Q5BLP8 95 aa11.81□□□□□ -0.52
GDE1-203ENST00000564172 ORMDL1Q9P0S3 153 aa11.8□□□□□ -0.52
GDE1-203ENST00000564172 TRBV7-4A0A0J9YYF1 115 aa11.79□□□□□ -0.52
GDE1-203ENST00000564172 MIR7-3HGQ8N6C7 128 aa11.79□□□□□ -0.52
GDE1-203ENST00000564172 KRTAP26-1Q6PEX3 210 aa11.79□□□□□ -0.52
GDE1-203ENST00000564172 Q1T7F1 81 aa11.77□□□□□ -0.53
GDE1-203ENST00000564172 Q8IZM0 81 aa11.77□□□□□ -0.53
GDE1-203ENST00000564172 DNAH7Q8WXX0 4024 aa11.77□□□□□ -0.53
GDE1-203ENST00000564172 UBE2DNLQ8IWF7 75 aa11.76□□□□□ -0.53
GDE1-203ENST00000564172 KIAA0087Q14695 138 aa11.75□□□□□ -0.53
GDE1-203ENST00000564172 PLECQ15149 4684 aaKnown RBP11.75□□□□□ -0.53
GDE1-203ENST00000564172 LINC00167Q96N53 147 aa11.75□□□□□ -0.53
GDE1-203ENST00000564172 IGKV2D-24A0A075B6R9 120 aa11.74□□□□□ -0.53
GDE1-203ENST00000564172 C6orf223Q8N319 242 aa11.74□□□□□ -0.53
GDE1-203ENST00000564172 SMIM11BQ8TCY0 68 aa11.74□□□□□ -0.53
GDE1-203ENST00000564172 LYSTQ99698 3801 aa11.74□□□□□ -0.53
GDE1-203ENST00000564172 LECT2O14960 151 aa11.73□□□□□ -0.53
GDE1-203ENST00000564172 STARD9Q9P2P6 4700 aa11.72□□□□□ -0.53
GDE1-203ENST00000564172 CXCL6P80162 114 aa11.71□□□□□ -0.53
GDE1-203ENST00000564172 LINC00337Q8N6G1 96 aa11.71□□□□□ -0.53
GDE1-203ENST00000564172 TENM2Q9NT68 2774 aa11.71□□□□□ -0.54
GDE1-203ENST00000564172 TMEM254Q8TBM7 123 aa11.7□□□□□ -0.54
GDE1-203ENST00000564172 SPAG11BQ08648 103 aa11.7□□□□□ -0.54
GDE1-203ENST00000564172 MUC7Q8TAX7 377 aa11.7□□□□□ -0.54
GDE1-203ENST00000564172 TMEM256-PLSCR3K7ERE1 68 aa11.69□□□□□ -0.54
GDE1-203ENST00000564172 LINC01547P58512 204 aaPredicted RBP11.68□□□□□ -0.54
GDE1-203ENST00000564172 KRTAP1-5Q9BYS1 174 aa11.68□□□□□ -0.54
GDE1-203ENST00000564172 IGKV2-28A0A075B6P5 120 aa11.68□□□□□ -0.54
GDE1-203ENST00000564172 IGKV2D-28P01615 120 aa11.68□□□□□ -0.54
GDE1-203ENST00000564172 FUSP35637 526 aaKnown RBP eCLIP11.67□□□□□ -0.54
GDE1-203ENST00000564172 KTN1-AS1Q86SY8 53 aa11.67□□□□□ -0.54
GDE1-203ENST00000564172 RBM12B-AS1Q9P1G2 102 aa11.67□□□□□ -0.54
GDE1-203ENST00000564172 TGP01266 2768 aa11.67□□□□□ -0.54
GDE1-203ENST00000564172 DNAH1Q9P2D7 4330 aa11.66□□□□□ -0.54
GDE1-203ENST00000564172 C15orf56Q8N910 161 aa11.66□□□□□ -0.54
GDE1-203ENST00000564172 WWC2-AS2Q96NR7 200 aa11.65□□□□□ -0.54
GDE1-203ENST00000564172 SND1-IT1Q9HBX3 110 aa11.65□□□□□ -0.54
GDE1-203ENST00000564172 HIGD2BQ4VC39 106 aa11.64□□□□□ -0.55
GDE1-203ENST00000564172 LINC00158P58513 81 aa11.64□□□□□ -0.55
GDE1-203ENST00000564172 UNQ6190/PRO20217Q6UXQ8 127 aa11.64□□□□□ -0.55
GDE1-203ENST00000564172 PRYO14603 147 aa11.63□□□□□ -0.55
GDE1-203ENST00000564172 NREPQ16612 68 aa11.63□□□□□ -0.55
GDE1-203ENST00000564172 C10orf25Q5T742 122 aa11.63□□□□□ -0.55
GDE1-203ENST00000564172 CASC10Q5T4H9 136 aa11.63□□□□□ -0.55
GDE1-203ENST00000564172 hDV103S1A0JD37 113 aa11.62□□□□□ -0.55
GDE1-203ENST00000564172 LOC110117498A0A087WWA1 95 aa11.62□□□□□ -0.55
GDE1-203ENST00000564172 SLPIP03973 132 aa11.61□□□□□ -0.55
GDE1-203ENST00000564172 C9orf116Q5BN46 136 aaPredicted RBP11.61□□□□□ -0.55
GDE1-203ENST00000564172 GVQW2A0A096LPI5 108 aaPredicted RBP11.6□□□□□ -0.55
GDE1-203ENST00000564172 NBDYA0A0U1RRE5 68 aa11.6□□□□□ -0.55
GDE1-203ENST00000564172 COX17Q14061 63 aa11.59□□□□□ -0.55
GDE1-203ENST00000564172 Q6ZQT0 140 aa11.59□□□□□ -0.55
GDE1-203ENST00000564172 Q6ZRP5 223 aa11.59□□□□□ -0.55
GDE1-203ENST00000564172 Q6ZVQ6 151 aa11.59□□□□□ -0.55
GDE1-203ENST00000564172 CAMK2N2Q96S95 79 aa11.59□□□□□ -0.55
GDE1-203ENST00000564172 C6orf48Q9UBA6 75 aa11.58□□□□□ -0.56
GDE1-203ENST00000564172 VPS13DQ5THJ4 4388 aa11.57□□□□□ -0.56
GDE1-203ENST00000564172 NDUFS5O43920 106 aa11.57□□□□□ -0.56
GDE1-203ENST00000564172 HAMPP81172 84 aa11.56□□□□□ -0.56
GDE1-203ENST00000564172 PDE6GP18545 87 aa11.56□□□□□ -0.56
GDE1-203ENST00000564172 Q8N814 137 aa11.56□□□□□ -0.56
GDE1-203ENST00000564172 UBE2BP63146 152 aa11.55□□□□□ -0.56
GDE1-203ENST00000564172 M0R378 163 aa11.53□□□□□ -0.56
GDE1-203ENST00000564172 PSCAO43653 123 aa11.53□□□□□ -0.56
GDE1-203ENST00000564172 BPY2O14599 106 aa11.52□□□□□ -0.56
GDE1-203ENST00000564172 SYCNQ0VAF6 134 aa11.52□□□□□ -0.56
GDE1-203ENST00000564172 M0R2N4 97 aa11.52□□□□□ -0.57
GDE1-203ENST00000564172 DNAH10Q8IVF4 4471 aa11.51□□□□□ -0.57
GDE1-203ENST00000564172 C3orf84H3BNL1 204 aa11.5□□□□□ -0.57
GDE1-203ENST00000564172 PHF5AQ7RTV0 110 aaKnown RBP11.5□□□□□ -0.57
GDE1-203ENST00000564172 TRAV22A0A0B4J277 110 aa11.5□□□□□ -0.57
GDE1-203ENST00000564172 Q6ZRN7 208 aaPredicted RBP11.48□□□□□ -0.57
GDE1-203ENST00000564172 OCR1Q9BZK8 76 aa11.48□□□□□ -0.57
GDE1-203ENST00000564172 LY6G6CO95867 125 aa11.48□□□□□ -0.57
GDE1-203ENST00000564172 Q6ZR54 194 aa11.47□□□□□ -0.57
GDE1-203ENST00000564172 LINC00476Q8WZB0 136 aa11.46□□□□□ -0.57
GDE1-203ENST00000564172 KMT2AQ03164 3969 aa11.46□□□□□ -0.58
GDE1-203ENST00000564172 H3BQ85 93 aa11.45□□□□□ -0.58
GDE1-203ENST00000564172 XAGE1AQ9HD64 81 aa11.44□□□□□ -0.58
GDE1-203ENST00000564172 LRCOL1A6NCL2 159 aa11.43□□□□□ -0.58
GDE1-203ENST00000564172 PSPHP1O15172 72 aa11.43□□□□□ -0.58
GDE1-203ENST00000564172 C1orf64Q8NEQ6 169 aa11.43□□□□□ -0.58
GDE1-203ENST00000564172 ATP11AUNQ6ZP68 121 aa11.42□□□□□ -0.58
GDE1-203ENST00000564172 Q8NDZ9 215 aa11.42□□□□□ -0.58
GDE1-203ENST00000564172 PRR3P79522 188 aaKnown RBP11.41□□□□□ -0.58
GDE1-203ENST00000564172 C14orf177Q52M58 125 aa11.41□□□□□ -0.58
GDE1-203ENST00000564172 TLX1NBP0CAT3 122 aa11.41□□□□□ -0.58
GDE1-203ENST00000564172 UBE2AP49459 152 aa11.41□□□□□ -0.58
GDE1-203ENST00000564172 CYP4F30PQ9H0H9 118 aa11.4□□□□□ -0.58
GDE1-203ENST00000564172 CNBPP62633 177 aaKnown RBP11.39□□□□□ -0.59
GDE1-203ENST00000564172 LCE6AA0A183 80 aa11.38□□□□□ -0.59
GDE1-203ENST00000564172 ZNF73O43830 326 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms