RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 A0A0A0MQY5 61 aa4.09□□□□□ -1.76
CLK3-212ENST00000563418 CCDC168Q8NDH2 2452 aa4.09□□□□□ -1.76
CLK3-212ENST00000563418 CIRBP-AS1Q8TBR5 109 aa4.08□□□□□ -1.76
CLK3-212ENST00000563418 SPINK7P58062 85 aa4.08□□□□□ -1.76
CLK3-212ENST00000563418 PRO3102Q9H379 93 aa4.08□□□□□ -1.76
CLK3-212ENST00000563418 NAV2Q8IVL1 2488 aa4.08□□□□□ -1.76
CLK3-212ENST00000563418 CR1P17927 2039 aa4.08□□□□□ -1.76
CLK3-212ENST00000563418 KRTAP16-1A8MUX0 517 aa4.07□□□□□ -1.76
CLK3-212ENST00000563418 C9orf163Q8N9P6 203 aa4.06□□□□□ -1.76
CLK3-212ENST00000563418 IGLV5-37A0A075B6J1 123 aa4.06□□□□□ -1.76
CLK3-212ENST00000563418 MTORP42345 2549 aa4.06□□□□□ -1.76
CLK3-212ENST00000563418 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
CLK3-212ENST00000563418 X6R8D5 127 aa4.05□□□□□ -1.76
CLK3-212ENST00000563418 HRES1P13985 223 aa4.05□□□□□ -1.76
CLK3-212ENST00000563418 F8P00451 2351 aa4.05□□□□□ -1.76
CLK3-212ENST00000563418 NOTCH2Q04721 2471 aa4.05□□□□□ -1.76
CLK3-212ENST00000563418 PKD1L2Q7Z442 2459 aa4.05□□□□□ -1.76
CLK3-212ENST00000563418 SETD2Q9BYW2 2564 aaPredicted RBP4.04□□□□□ -1.76
CLK3-212ENST00000563418 LINC00612Q8N6U2 182 aa4.03□□□□□ -1.76
CLK3-212ENST00000563418 JMJD1CQ15652 2540 aa4.03□□□□□ -1.76
CLK3-212ENST00000563418 USP9XQ93008 2570 aaPredicted RBP4.03□□□□□ -1.76
CLK3-212ENST00000563418 SPATA8Q6RVD6 105 aa4.03□□□□□ -1.76
CLK3-212ENST00000563418 CSNK1G2-AS1Q8NCQ2 148 aa4.01□□□□□ -1.77
CLK3-212ENST00000563418 CNBPP62633 177 aaKnown RBP4.01□□□□□ -1.77
CLK3-212ENST00000563418 ANKRD17O75179 2603 aaKnown RBP4□□□□□ -1.77
CLK3-212ENST00000563418 PRRC2CQ9Y520 2896 aaKnown RBP4□□□□□ -1.77
CLK3-212ENST00000563418 DNAH10OSP0CZ25 163 aa4□□□□□ -1.77
CLK3-212ENST00000563418 NUPR2A6NF83 97 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 MMP24-AS1A0A0U1RRL7 71 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 LY6G6CO95867 125 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 A0A1B0GU33 70 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 NCOR2Q9Y618 2525 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 Q6ZR54 194 aa3.99□□□□□ -1.77
CLK3-212ENST00000563418 ZFHX2Q9C0A1 2572 aaPredicted RBP3.99□□□□□ -1.77
CLK3-212ENST00000563418 USP9YO00507 2555 aaPredicted RBP3.98□□□□□ -1.77
CLK3-212ENST00000563418 ABCA12Q86UK0 2595 aa3.98□□□□□ -1.77
CLK3-212ENST00000563418 FAM168BA1KXE4 195 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 IGLV7-43P04211 117 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 KRTAP25-1Q3LHN0 102 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 CHD8Q9HCK8 2581 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 LRRK2Q5S007 2527 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 ROMO1P60602 79 aa3.97□□□□□ -1.77
CLK3-212ENST00000563418 C19orf73Q9NVV2 129 aa3.96□□□□□ -1.78
CLK3-212ENST00000563418 INAFM1C9JVW0 142 aa3.96□□□□□ -1.78
CLK3-212ENST00000563418 SEC61BP60468 96 aaKnown RBP3.96□□□□□ -1.78
CLK3-212ENST00000563418 BDP1A6H8Y1 2624 aa3.96□□□□□ -1.78
CLK3-212ENST00000563418 LINC00472Q9H8W2 130 aa3.95□□□□□ -1.78
CLK3-212ENST00000563418 SPRR1AP35321 89 aa3.95□□□□□ -1.78
CLK3-212ENST00000563418 APLNQ9ULZ1 77 aa3.94□□□□□ -1.78
CLK3-212ENST00000563418 SPTBN4Q9H254 2564 aa3.94□□□□□ -1.78
CLK3-212ENST00000563418 TNP2Q05952 138 aa3.94□□□□□ -1.78
CLK3-212ENST00000563418 KRTAP29-1A8MX34 341 aaPredicted RBP3.94□□□□□ -1.78
CLK3-212ENST00000563418 NOTCH2NLQ7Z3S9 236 aa3.94□□□□□ -1.78
CLK3-212ENST00000563418 ANKRD11Q6UB99 2663 aaPredicted RBP3.93□□□□□ -1.78
CLK3-212ENST00000563418 MUC6Q6W4X9 2439 aa3.93□□□□□ -1.78
CLK3-212ENST00000563418 GIG44P09565 113 aaPredicted RBP3.93□□□□□ -1.78
CLK3-212ENST00000563418 A0A1W2PPR1 153 aa3.92□□□□□ -1.78
CLK3-212ENST00000563418 IGLV5-52A0A0A0MRZ9 124 aa3.91□□□□□ -1.78
CLK3-212ENST00000563418 SPRR1BP22528 89 aa3.91□□□□□ -1.78
CLK3-212ENST00000563418 Q96NJ1 140 aa3.91□□□□□ -1.78
CLK3-212ENST00000563418 IGF2RP11717 2491 aa3.91□□□□□ -1.78
CLK3-212ENST00000563418 ZFYVE26Q68DK2 2539 aa3.91□□□□□ -1.78
CLK3-212ENST00000563418 CAMK2N1Q7Z7J9 78 aa3.9□□□□□ -1.78
CLK3-212ENST00000563418 Q8NDZ9 215 aa3.9□□□□□ -1.79
CLK3-212ENST00000563418 SPACA4Q8TDM5 124 aa3.89□□□□□ -1.79
CLK3-212ENST00000563418 POLQO75417 2590 aa3.89□□□□□ -1.79
CLK3-212ENST00000563418 CEP295Q9C0D2 2601 aa3.88□□□□□ -1.79
CLK3-212ENST00000563418 RTL8CO15255 209 aa3.88□□□□□ -1.79
CLK3-212ENST00000563418 A0A0G2JQZ4 141 aa3.88□□□□□ -1.79
CLK3-212ENST00000563418 A0A1W2PNN7 141 aa3.88□□□□□ -1.79
CLK3-212ENST00000563418 ZNF861PO60384 105 aa3.87□□□□□ -1.79
CLK3-212ENST00000563418 A8MU10 97 aa3.87□□□□□ -1.79
CLK3-212ENST00000563418 Q5W150 140 aa3.86□□□□□ -1.79
CLK3-212ENST00000563418 ADM2Q7Z4H4 148 aa3.85□□□□□ -1.79
CLK3-212ENST00000563418 RPL37P61927 97 aaKnown RBP3.85□□□□□ -1.79
CLK3-212ENST00000563418 A0A0C4DFX4 3053 aa3.85□□□□□ -1.79
CLK3-212ENST00000563418 LINC00483Q53H64 154 aa3.85□□□□□ -1.79
CLK3-212ENST00000563418 H1FX-AS1Q4G0G2 97 aa3.84□□□□□ -1.8
CLK3-212ENST00000563418 CENPFP49454 3210 aa3.84□□□□□ -1.8
CLK3-212ENST00000563418 COX6B2Q6YFQ2 88 aa3.84□□□□□ -1.8
CLK3-212ENST00000563418 Q8N1X5 172 aa3.83□□□□□ -1.8
CLK3-212ENST00000563418 KRTAP26-1Q6PEX3 210 aa3.83□□□□□ -1.8
CLK3-212ENST00000563418 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
CLK3-212ENST00000563418 A0A0D9SG42 100 aa3.82□□□□□ -1.8
CLK3-212ENST00000563418 PLAC8Q9NZF1 115 aa3.82□□□□□ -1.8
CLK3-212ENST00000563418 KRTAP4-16G5E9R7 235 aaPredicted RBP3.82□□□□□ -1.8
CLK3-212ENST00000563418 ACANP16112 2415 aa3.81□□□□□ -1.8
CLK3-212ENST00000563418 TYMSOSQ8TAI1 123 aa3.8□□□□□ -1.8
CLK3-212ENST00000563418 FASNP49327 2511 aaKnown RBP3.8□□□□□ -1.8
CLK3-212ENST00000563418 C20orf166-AS1Q96NR2 134 aa3.79□□□□□ -1.8
CLK3-212ENST00000563418 SRCAPQ6ZRS2 3230 aa3.79□□□□□ -1.8
CLK3-212ENST00000563418 NBDYA0A0U1RRE5 68 aa3.79□□□□□ -1.8
CLK3-212ENST00000563418 A8MUU9 505 aa3.79□□□□□ -1.8
CLK3-212ENST00000563418 PANO1I0J062 215 aa3.78□□□□□ -1.8
CLK3-212ENST00000563418 ANAPC11Q9NYG5 84 aa3.78□□□□□ -1.8
CLK3-212ENST00000563418 J3QL48 77 aa3.77□□□□□ -1.81
CLK3-212ENST00000563418 PSORS1C2Q9UIG4 136 aa3.76□□□□□ -1.81
CLK3-212ENST00000563418 GCN1Q92616 2671 aaKnown RBP3.76□□□□□ -1.81
CLK3-212ENST00000563418 CASC10Q5T4H9 136 aa3.76□□□□□ -1.81
CLK3-212ENST00000563418 CENPEQ02224 2701 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms