RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CSAG1Q6PB30 78 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 Q6ZQY7 126 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 FDCSPQ8NFU4 85 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 TTTY12Q9BZ98 90 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 CACNA1GO43497 2377 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 WDR87Q6ZQQ6 2873 aa2.03□□□□□ -2.08
VPS35-203ENST00000562420 RIF1Q5UIP0 2472 aaKnown RBP2.02□□□□□ -2.09
VPS35-203ENST00000562420 SDK1Q7Z5N4 2213 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 H3BUA1 57 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 IGLV6-57P01721 117 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 SPINK7P58062 85 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 C10orf55Q5SWW7 151 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 C15orf56Q8N910 161 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 LEAP2Q969E1 77 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 EP300Q09472 2414 aaPredicted RBP2.02□□□□□ -2.09
VPS35-203ENST00000562420 MUC6Q6W4X9 2439 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 GVINP1Q7Z2Y8 2422 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 FAM186AA6NE01 2351 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 ZNF407Q9C0G0 2248 aa2.02□□□□□ -2.09
VPS35-203ENST00000562420 COL27A1Q8IZC6 1860 aaPredicted RBP2.01□□□□□ -2.09
VPS35-203ENST00000562420 DIDO1Q9BTC0 2240 aaKnown RBP2.01□□□□□ -2.09
VPS35-203ENST00000562420 IGKV2D-24A0A075B6R9 120 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 NUPR2A6NF83 97 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 ACYP2P14621 99 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 COX6A2Q02221 97 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 MINOS1Q5TGZ0 78 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 KRTAP26-1Q6PEX3 210 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 DEFB124Q8NES8 71 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 PSORS1C2Q9UIG4 136 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 CNOT1A5YKK6 2376 aaKnown RBP2.01□□□□□ -2.09
VPS35-203ENST00000562420 FRYLO94915 3013 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 DNAJC13O75165 2243 aa2.01□□□□□ -2.09
VPS35-203ENST00000562420 SDK2Q58EX2 2172 aa2□□□□□ -2.09
VPS35-203ENST00000562420 MALRD1Q5VYJ5 2156 aa2□□□□□ -2.09
VPS35-203ENST00000562420 CR1P17927 2039 aa2□□□□□ -2.09
VPS35-203ENST00000562420 LINC00959A0A1B0GUT2 108 aa2□□□□□ -2.09
VPS35-203ENST00000562420 CCL3L1P16619 93 aa2□□□□□ -2.09
VPS35-203ENST00000562420 LINC00483Q53H64 154 aa2□□□□□ -2.09
VPS35-203ENST00000562420 USMG5Q96IX5 58 aa2□□□□□ -2.09
VPS35-203ENST00000562420 C20orf166-AS1Q96NR2 134 aa2□□□□□ -2.09
VPS35-203ENST00000562420 SVILO95425 2214 aa2□□□□□ -2.09
VPS35-203ENST00000562420 WDFY4Q6ZS81 3184 aa2□□□□□ -2.09
VPS35-203ENST00000562420 DOCK10Q96BY6 2186 aa2□□□□□ -2.09
VPS35-203ENST00000562420 SPTA1P02549 2419 aa2□□□□□ -2.09
VPS35-203ENST00000562420 ZNF292O60281 2723 aa2□□□□□ -2.09
VPS35-203ENST00000562420 PTPRZ1P23471 2315 aaPredicted RBP2□□□□□ -2.09
VPS35-203ENST00000562420 CNTRLQ7Z7A1 2325 aa2□□□□□ -2.09
VPS35-203ENST00000562420 ASPMQ8IZT6 3477 aa2□□□□□ -2.09
VPS35-203ENST00000562420 MAP1BP46821 2468 aaKnown RBP1.99□□□□□ -2.09
VPS35-203ENST00000562420 SPEGQ15772 3267 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 PRR14LQ5THK1 2151 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 GVQW2A0A096LPI5 108 aaPredicted RBP1.99□□□□□ -2.09
VPS35-203ENST00000562420 A0A1B0GU69 56 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 A8MTW9 85 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 ODF3BA8MYP8 253 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 LYNX1G3V0Z9 82 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 PRB4P10163 310 aaPredicted RBP1.99□□□□□ -2.09
VPS35-203ENST00000562420 CIRBP-AS1Q8TBR5 109 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 MINOS1-NBL1R4GNA1 71 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 RTTNQ86VV8 2226 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 CEP250Q9BV73 2442 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 ACACAQ13085 2346 aa1.99□□□□□ -2.09
VPS35-203ENST00000562420 LAMA5O15230 3695 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 TRGV1A0A0A0MS02 117 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 TLX1NBP0CAT3 122 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 DEFB131AP59861 70 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 DEFB109BQ30KR1 87 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 PRR9Q5T870 116 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 Q5W150 140 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 SPINT4Q6UDR6 99 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 LCE3DQ9BYE3 92 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 CACNA1AO00555 2505 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 FREM2Q5SZK8 3169 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 ZFHX2Q9C0A1 2572 aaPredicted RBP1.98□□□□□ -2.09
VPS35-203ENST00000562420 BSNQ9UPA5 3926 aa1.98□□□□□ -2.09
VPS35-203ENST00000562420 A0A1B0GU33 70 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 A8MUU9 505 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 M0R2N4 97 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 ANGP03950 147 aaKnown RBP1.97□□□□□ -2.09
VPS35-203ENST00000562420 ST20-AS1Q8NBB2 130 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 ZFHX4Q86UP3 3567 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 CADP27708 2225 aa1.97□□□□□ -2.09
VPS35-203ENST00000562420 APC2O95996 2303 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 CFAP54Q96N23 3096 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 SPRR5A0A1B0GTR4 108 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 TFF1P04155 84 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 LY6EQ16553 131 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 DEFB116Q30KQ4 102 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 ADM2Q7Z4H4 148 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 CEP295Q9C0D2 2601 aa1.96□□□□□ -2.1
VPS35-203ENST00000562420 ANKRD11Q6UB99 2663 aaPredicted RBP1.95□□□□□ -2.1
VPS35-203ENST00000562420 SPENQ96T58 3664 aaKnown RBP1.95□□□□□ -2.1
VPS35-203ENST00000562420 RP1L1Q8IWN7 2480 aaPredicted RBP1.95□□□□□ -2.1
VPS35-203ENST00000562420 CFAP47Q6ZTR5 3102 aa1.95□□□□□ -2.1
VPS35-203ENST00000562420 IGKV3-7A0A075B6H7 116 aa1.95□□□□□ -2.1
VPS35-203ENST00000562420 HRES1P13985 223 aa1.95□□□□□ -2.1
VPS35-203ENST00000562420 TOMM7Q9P0U1 55 aa1.95□□□□□ -2.1
VPS35-203ENST00000562420 ANKHD1Q8IWZ3 2542 aaKnown RBP1.95□□□□□ -2.1
VPS35-203ENST00000562420 CELSR3Q9NYQ7 3312 aa1.95□□□□□ -2.1
VPS35-203ENST00000562420 DMXL1Q9Y485 3027 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 195.8 ms