RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 B5MCH6 92 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 C15orf56Q8N910 161 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 SMCR5Q8TEV8 140 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 SOSTDC1Q6X4U4 206 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 SMIM20Q8N5G0 67 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 Q8N814 137 aa6.09□□□□□ -1.43
VPS39-205ENST00000562258 F8WDY8 70 aa6.09□□□□□ -1.43
VPS39-205ENST00000562258 H3BT86 120 aa6.09□□□□□ -1.43
VPS39-205ENST00000562258 LINC01546A6NGU7 62 aa6.08□□□□□ -1.44
VPS39-205ENST00000562258 C9orf163Q8N9P6 203 aa6.08□□□□□ -1.44
VPS39-205ENST00000562258 Q9BRP9 147 aa6.07□□□□□ -1.44
VPS39-205ENST00000562258 NDUFC2O95298 119 aa6.07□□□□□ -1.44
VPS39-205ENST00000562258 MT-ATP8P03928 68 aa6.07□□□□□ -1.44
VPS39-205ENST00000562258 NDUFV3P56181 108 aaKnown RBP6.07□□□□□ -1.44
VPS39-205ENST00000562258 SERTAD4-AS1Q5TG53 156 aa6.07□□□□□ -1.44
VPS39-205ENST00000562258 C3orf22Q8N5N4 141 aa6.07□□□□□ -1.44
VPS39-205ENST00000562258 FAM19A3Q7Z5A8 133 aa6.06□□□□□ -1.44
VPS39-205ENST00000562258 BPY2O14599 106 aa6.06□□□□□ -1.44
VPS39-205ENST00000562258 KIAA0087Q14695 138 aa6.06□□□□□ -1.44
VPS39-205ENST00000562258 LST1O00453 97 aa6.06□□□□□ -1.44
VPS39-205ENST00000562258 EIF4EBP3O60516 100 aaPredicted RBP6.06□□□□□ -1.44
VPS39-205ENST00000562258 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.05□□□□□ -1.44
VPS39-205ENST00000562258 PRYO14603 147 aa6.05□□□□□ -1.44
VPS39-205ENST00000562258 KRTAP1-5Q9BYS1 174 aa6.05□□□□□ -1.44
VPS39-205ENST00000562258 LINC00336Q6ZUF6 198 aa6.05□□□□□ -1.44
VPS39-205ENST00000562258 H3BQ85 93 aa6.04□□□□□ -1.44
VPS39-205ENST00000562258 J3QL48 77 aa6.04□□□□□ -1.44
VPS39-205ENST00000562258 DEFB116Q30KQ4 102 aa6.04□□□□□ -1.44
VPS39-205ENST00000562258 EPM2AB3EWF7 344 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 RPL37AP61513 92 aaKnown RBP6.03□□□□□ -1.44
VPS39-205ENST00000562258 MOBPQ13875 183 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 FAM236AA0A1B0GUQ0 79 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 FAM236BA0A1B0GV22 79 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 KRTAP21-3Q3LHN1 58 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 SPACA4Q8TDM5 124 aa6.03□□□□□ -1.44
VPS39-205ENST00000562258 PDE6GP18545 87 aa6.02□□□□□ -1.45
VPS39-205ENST00000562258 A0A087WSZ3 146 aa6.02□□□□□ -1.45
VPS39-205ENST00000562258 PLA2G1BP04054 148 aaKnown RBP6.02□□□□□ -1.45
VPS39-205ENST00000562258 A0A1W2PNN7 141 aa6.02□□□□□ -1.45
VPS39-205ENST00000562258 ST20-AS1Q8NBB2 130 aa6.02□□□□□ -1.45
VPS39-205ENST00000562258 BSNQ9UPA5 3926 aa6.01□□□□□ -1.45
VPS39-205ENST00000562258 VPREB1P12018 145 aa6.01□□□□□ -1.45
VPS39-205ENST00000562258 ANAPC11Q9NYG5 84 aa6.01□□□□□ -1.45
VPS39-205ENST00000562258 LINC00575Q6W349 94 aa6.01□□□□□ -1.45
VPS39-205ENST00000562258 C9orf129Q5T035 196 aaKnown RBP6□□□□□ -1.45
VPS39-205ENST00000562258 WFDC13Q8IUB5 93 aa6□□□□□ -1.45
VPS39-205ENST00000562258 LCE6AA0A183 80 aa5.99□□□□□ -1.45
VPS39-205ENST00000562258 CRYGAP11844 174 aa5.99□□□□□ -1.45
VPS39-205ENST00000562258 A0A1B0GX51 115 aa5.98□□□□□ -1.45
VPS39-205ENST00000562258 TYMSOSQ8TAI1 123 aa5.98□□□□□ -1.45
VPS39-205ENST00000562258 SDIM1Q6ZPB5 146 aa5.97□□□□□ -1.45
VPS39-205ENST00000562258 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.97□□□□□ -1.45
VPS39-205ENST00000562258 IGKV4-1P06312 121 aa5.97□□□□□ -1.45
VPS39-205ENST00000562258 BCE1O60756 84 aa5.96□□□□□ -1.45
VPS39-205ENST00000562258 ACYP1P07311 99 aa5.96□□□□□ -1.45
VPS39-205ENST00000562258 Q6ZRX8 168 aa5.96□□□□□ -1.45
VPS39-205ENST00000562258 LINC00528Q8N1L1 170 aa5.96□□□□□ -1.45
VPS39-205ENST00000562258 PSORS1C2Q9UIG4 136 aa5.96□□□□□ -1.46
VPS39-205ENST00000562258 FAM218AQ96MZ4 157 aa5.95□□□□□ -1.46
VPS39-205ENST00000562258 LITAFQ99732 161 aa5.95□□□□□ -1.46
VPS39-205ENST00000562258 IGHV6-1A0A0B4J1U7 121 aa5.94□□□□□ -1.46
VPS39-205ENST00000562258 PRR4Q16378 134 aa5.94□□□□□ -1.46
VPS39-205ENST00000562258 CNBPP62633 177 aaKnown RBP5.94□□□□□ -1.46
VPS39-205ENST00000562258 RETNLBQ9BQ08 111 aa5.94□□□□□ -1.46
VPS39-205ENST00000562258 IGLV1-50A0A075B6I6 118 aa5.93□□□□□ -1.46
VPS39-205ENST00000562258 FAM30AQ9NZY2 134 aa5.93□□□□□ -1.46
VPS39-205ENST00000562258 KRTAP10-2P60368 255 aa5.93□□□□□ -1.46
VPS39-205ENST00000562258 A0A0G2JQZ4 141 aa5.92□□□□□ -1.46
VPS39-205ENST00000562258 FAM104AQ969W3 186 aa5.92□□□□□ -1.46
VPS39-205ENST00000562258 Q6JHZ5 121 aa5.92□□□□□ -1.46
VPS39-205ENST00000562258 ELOF1P60002 83 aaKnown RBP5.92□□□□□ -1.46
VPS39-205ENST00000562258 TRRAPQ9Y4A5 3859 aa5.91□□□□□ -1.46
VPS39-205ENST00000562258 ZNF861PO60384 105 aa5.91□□□□□ -1.46
VPS39-205ENST00000562258 MP68P56378 58 aa5.9□□□□□ -1.46
VPS39-205ENST00000562258 ATOX1O00244 68 aa5.9□□□□□ -1.47
VPS39-205ENST00000562258 IGLV6-57P01721 117 aa5.9□□□□□ -1.47
VPS39-205ENST00000562258 LINC00643Q86TS7 51 aa5.9□□□□□ -1.47
VPS39-205ENST00000562258 KCNQ1DNQ9H478 68 aa5.88□□□□□ -1.47
VPS39-205ENST00000562258 IGLV7-43P04211 117 aa5.88□□□□□ -1.47
VPS39-205ENST00000562258 TLX1NBP0CAT3 122 aa5.88□□□□□ -1.47
VPS39-205ENST00000562258 ERC2-IT1O76042 136 aa5.87□□□□□ -1.47
VPS39-205ENST00000562258 SMCPP49901 116 aaPredicted RBP5.87□□□□□ -1.47
VPS39-205ENST00000562258 KRTAP10-1P60331 282 aa5.87□□□□□ -1.47
VPS39-205ENST00000562258 Q8N9L7 120 aa5.87□□□□□ -1.47
VPS39-205ENST00000562258 FBN3Q75N90 2809 aa5.86□□□□□ -1.47
VPS39-205ENST00000562258 A0A087WVE0 104 aa5.86□□□□□ -1.47
VPS39-205ENST00000562258 CCDC179H3BU77 68 aa5.86□□□□□ -1.47
VPS39-205ENST00000562258 C20orf197Q8N268 126 aa5.86□□□□□ -1.47
VPS39-205ENST00000562258 LIMD2Q9BT23 127 aa5.86□□□□□ -1.47
VPS39-205ENST00000562258 J3KT08 172 aa5.85□□□□□ -1.47
VPS39-205ENST00000562258 LINC01547P58512 204 aaPredicted RBP5.85□□□□□ -1.47
VPS39-205ENST00000562258 Q6ZR54 194 aa5.84□□□□□ -1.47
VPS39-205ENST00000562258 COL7A1Q02388 2944 aa5.84□□□□□ -1.47
VPS39-205ENST00000562258 Q8NBF4 154 aa5.83□□□□□ -1.48
VPS39-205ENST00000562258 UQCRQO14949 82 aa5.83□□□□□ -1.48
VPS39-205ENST00000562258 CDIP1Q9H305 208 aa5.82□□□□□ -1.48
VPS39-205ENST00000562258 LINC00846Q9NV44 126 aa5.82□□□□□ -1.48
VPS39-205ENST00000562258 PRR26Q8N8Z3 221 aa5.82□□□□□ -1.48
VPS39-205ENST00000562258 TRBV7-6A0A0J9YX20 115 aa5.81□□□□□ -1.48
VPS39-205ENST00000562258 PANO1I0J062 215 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms