RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 ZCCHC13Q8WW36 166 aaKnown RBP12.54□□□□□ -0.4
RAB40C-206ENST00000561781 NOTCH3Q9UM47 2321 aa12.54□□□□□ -0.4
RAB40C-206ENST00000561781 IGLV6-57P01721 117 aa12.54□□□□□ -0.4
RAB40C-206ENST00000561781 FAM30AQ9NZY2 134 aa12.54□□□□□ -0.4
RAB40C-206ENST00000561781 IGHV4-28A0A0C4DH34 117 aa12.53□□□□□ -0.4
RAB40C-206ENST00000561781 C9orf116Q5BN46 136 aaPredicted RBP12.53□□□□□ -0.4
RAB40C-206ENST00000561781 Q5VV11 94 aa12.53□□□□□ -0.4
RAB40C-206ENST00000561781 TRGV4A0A0C4DH28 118 aa12.53□□□□□ -0.4
RAB40C-206ENST00000561781 C4orf48Q5BLP8 95 aa12.52□□□□□ -0.4
RAB40C-206ENST00000561781 CCL24O00175 119 aa12.52□□□□□ -0.41
RAB40C-206ENST00000561781 CLPSL2Q6UWE3 100 aa12.52□□□□□ -0.41
RAB40C-206ENST00000561781 LINC00269Q8N2A0 174 aa12.52□□□□□ -0.41
RAB40C-206ENST00000561781 SMIM29Q86T20 159 aa12.51□□□□□ -0.41
RAB40C-206ENST00000561781 A8MU10 97 aa12.5□□□□□ -0.41
RAB40C-206ENST00000561781 LINC00612Q8N6U2 182 aa12.5□□□□□ -0.41
RAB40C-206ENST00000561781 DIRC1Q969H9 104 aa12.5□□□□□ -0.41
RAB40C-206ENST00000561781 KIAA0087Q14695 138 aa12.49□□□□□ -0.41
RAB40C-206ENST00000561781 CELA1Q9UNI1 258 aa12.49□□□□□ -0.41
RAB40C-206ENST00000561781 HIGD2BQ4VC39 106 aa12.48□□□□□ -0.41
RAB40C-206ENST00000561781 CMYA5Q8N3K9 4069 aa12.48□□□□□ -0.41
RAB40C-206ENST00000561781 ATP11AUNQ6ZP68 121 aa12.48□□□□□ -0.41
RAB40C-206ENST00000561781 C16orf90A8MZG2 172 aa12.47□□□□□ -0.41
RAB40C-206ENST00000561781 PHF5AQ7RTV0 110 aaKnown RBP12.47□□□□□ -0.41
RAB40C-206ENST00000561781 CHKB-CPT1BH3BT56 60 aa12.46□□□□□ -0.42
RAB40C-206ENST00000561781 LIMD2Q9BT23 127 aa12.45□□□□□ -0.42
RAB40C-206ENST00000561781 NDUFB1O75438 58 aa12.45□□□□□ -0.42
RAB40C-206ENST00000561781 C16orf74Q96GX8 76 aa12.44□□□□□ -0.42
RAB40C-206ENST00000561781 IGHV4-30-4P0DP06 118 aa12.43□□□□□ -0.42
RAB40C-206ENST00000561781 C10orf25Q5T742 122 aa12.43□□□□□ -0.42
RAB40C-206ENST00000561781 MGAM2Q2M2H8 2515 aa12.43□□□□□ -0.42
RAB40C-206ENST00000561781 ETDCA0A1B0GVM5 59 aa12.43□□□□□ -0.42
RAB40C-206ENST00000561781 A0A1B0GUV1 79 aa12.42□□□□□ -0.42
RAB40C-206ENST00000561781 APOC4P55056 127 aa12.42□□□□□ -0.42
RAB40C-206ENST00000561781 SPTSSBQ8NFR3 76 aa12.42□□□□□ -0.42
RAB40C-206ENST00000561781 HCG22E2RYF7 251 aa12.41□□□□□ -0.42
RAB40C-206ENST00000561781 GIG44P09565 113 aaPredicted RBP12.41□□□□□ -0.42
RAB40C-206ENST00000561781 ELOF1P60002 83 aaKnown RBP12.41□□□□□ -0.42
RAB40C-206ENST00000561781 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.4□□□□□ -0.42
RAB40C-206ENST00000561781 KLK12Q9UKR0 248 aa12.4□□□□□ -0.42
RAB40C-206ENST00000561781 ZNF73O43830 326 aaPredicted RBP12.4□□□□□ -0.42
RAB40C-206ENST00000561781 C4orf3Q8WVX3 66 aa12.4□□□□□ -0.42
RAB40C-206ENST00000561781 NOTCH1P46531 2555 aa12.39□□□□□ -0.43
RAB40C-206ENST00000561781 PRR4Q16378 134 aa12.39□□□□□ -0.43
RAB40C-206ENST00000561781 A6NN06 94 aa12.38□□□□□ -0.43
RAB40C-206ENST00000561781 C3orf84H3BNL1 204 aa12.38□□□□□ -0.43
RAB40C-206ENST00000561781 IGLV10-54A0A075B6I4 117 aa12.37□□□□□ -0.43
RAB40C-206ENST00000561781 C11orf45Q8TAV5 145 aa12.37□□□□□ -0.43
RAB40C-206ENST00000561781 NBEAL1Q6ZS30 2694 aa12.36□□□□□ -0.43
RAB40C-206ENST00000561781 Q8N9P0 234 aaPredicted RBP12.36□□□□□ -0.43
RAB40C-206ENST00000561781 A0A1B0GW54 56 aa12.35□□□□□ -0.43
RAB40C-206ENST00000561781 CHCHD10Q8WYQ3 142 aaPredicted RBP12.35□□□□□ -0.43
RAB40C-206ENST00000561781 B9D2Q9BPU9 175 aa12.35□□□□□ -0.43
RAB40C-206ENST00000561781 GYPEP15421 78 aa12.33□□□□□ -0.44
RAB40C-206ENST00000561781 UNQ6190/PRO20217Q6UXQ8 127 aa12.33□□□□□ -0.44
RAB40C-206ENST00000561781 C7orf65Q6ZTY9 151 aa12.33□□□□□ -0.44
RAB40C-206ENST00000561781 PRR15LQ9BU68 103 aa12.33□□□□□ -0.44
RAB40C-206ENST00000561781 KRTAP21-3Q3LHN1 58 aa12.32□□□□□ -0.44
RAB40C-206ENST00000561781 A0A096LPF7 62 aa12.32□□□□□ -0.44
RAB40C-206ENST00000561781 LCA10Q71F78 164 aa12.32□□□□□ -0.44
RAB40C-206ENST00000561781 WFDC10AQ9H1F0 79 aa12.32□□□□□ -0.44
RAB40C-206ENST00000561781 Q75L30 129 aa12.31□□□□□ -0.44
RAB40C-206ENST00000561781 A0A0J9YWU9 116 aa12.31□□□□□ -0.44
RAB40C-206ENST00000561781 DEFB130BP0DP73 79 aa12.3□□□□□ -0.44
RAB40C-206ENST00000561781 DEFB130AP0DP74 79 aa12.3□□□□□ -0.44
RAB40C-206ENST00000561781 PRB2P02812 416 aaPredicted RBP12.29□□□□□ -0.44
RAB40C-206ENST00000561781 ST20-AS1Q8NBB2 130 aa12.29□□□□□ -0.44
RAB40C-206ENST00000561781 A6NED7 52 aa12.28□□□□□ -0.44
RAB40C-206ENST00000561781 CSNK1G2-AS1Q8NCQ2 148 aa12.28□□□□□ -0.44
RAB40C-206ENST00000561781 LINC00208Q96KT6 92 aa12.28□□□□□ -0.44
RAB40C-206ENST00000561781 Q9BRP9 147 aa12.27□□□□□ -0.45
RAB40C-206ENST00000561781 ANGP03950 147 aaKnown RBP12.26□□□□□ -0.45
RAB40C-206ENST00000561781 REG3AQ06141 175 aa12.26□□□□□ -0.45
RAB40C-206ENST00000561781 LINC00528Q8N1L1 170 aa12.26□□□□□ -0.45
RAB40C-206ENST00000561781 SPAG11BQ08648 103 aa12.26□□□□□ -0.45
RAB40C-206ENST00000561781 SPANXA2-OT1Q8N9U9 137 aa12.26□□□□□ -0.45
RAB40C-206ENST00000561781 C8orf87E5RJ46 101 aa12.25□□□□□ -0.45
RAB40C-206ENST00000561781 OXLD1Q5BKU9 147 aa12.25□□□□□ -0.45
RAB40C-206ENST00000561781 CDC42SE1Q9NRR8 79 aa12.25□□□□□ -0.45
RAB40C-206ENST00000561781 XAGE1AQ9HD64 81 aa12.24□□□□□ -0.45
RAB40C-206ENST00000561781 LOC101927531A0A1B0GV80 90 aa12.23□□□□□ -0.45
RAB40C-206ENST00000561781 MP68P56378 58 aa12.23□□□□□ -0.45
RAB40C-206ENST00000561781 IGLV5-48A0A075B6I7 105 aa12.22□□□□□ -0.45
RAB40C-206ENST00000561781 KPRPQ5T749 579 aaPredicted RBP12.22□□□□□ -0.45
RAB40C-206ENST00000561781 GVQW2A0A096LPI5 108 aaPredicted RBP12.21□□□□□ -0.46
RAB40C-206ENST00000561781 KCNQ1DNQ9H478 68 aa12.21□□□□□ -0.46
RAB40C-206ENST00000561781 DSCR10P59022 87 aa12.19□□□□□ -0.46
RAB40C-206ENST00000561781 MEGF8Q7Z7M0 2845 aa12.19□□□□□ -0.46
RAB40C-206ENST00000561781 VPREB1P12018 145 aa12.18□□□□□ -0.46
RAB40C-206ENST00000561781 K7EQZ3 153 aa12.17□□□□□ -0.46
RAB40C-206ENST00000561781 DNAH3Q8TD57 4116 aa12.17□□□□□ -0.46
RAB40C-206ENST00000561781 PRO0255Q9UI72 69 aa12.16□□□□□ -0.46
RAB40C-206ENST00000561781 C19orf73Q9NVV2 129 aa12.16□□□□□ -0.46
RAB40C-206ENST00000561781 C6orf48Q9UBA6 75 aa12.15□□□□□ -0.47
RAB40C-206ENST00000561781 A0A1W2PNM2 257 aa12.14□□□□□ -0.47
RAB40C-206ENST00000561781 CMC4P56277 68 aaPredicted RBP12.13□□□□□ -0.47
RAB40C-206ENST00000561781 H3BPC8 53 aa12.12□□□□□ -0.47
RAB40C-206ENST00000561781 KRTAP10-11P60412 298 aa12.12□□□□□ -0.47
RAB40C-206ENST00000561781 MOBPQ13875 183 aa12.12□□□□□ -0.47
RAB40C-206ENST00000561781 Q8N377 158 aa12.12□□□□□ -0.47
RAB40C-206ENST00000561781 NBEAL2Q6ZNJ1 2754 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms