RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRR15LQ9BU68 103 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 ABCA1O95477 2261 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 CEP350Q5VT06 3117 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 ZDBF2Q9HCK1 2354 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 CADP27708 2225 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 TRGV4A0A0C4DH28 118 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 LYNX1G3V0Z9 82 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 K7ERS5 55 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 IGLV7-43P04211 117 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 LYNX1P0DP58 116 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 LINC00313P59037 77 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 SPINT4Q6UDR6 99 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 C9orf163Q8N9P6 203 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 ST20-AS1Q8NBB2 130 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 WFDC10AQ9H1F0 79 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 CNTRLQ7Z7A1 2325 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 POLEQ07864 2286 aa1.5□□□□□ -2.17
VPS13C-208ENST00000559119 TECTAO75443 2155 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 MED13Q9UHV7 2174 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 TTC28Q96AY4 2481 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 TENM1Q9UKZ4 2725 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 KNL1Q8NG31 2342 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 MKI67P46013 3256 aaKnown RBP1.49□□□□□ -2.17
VPS13C-208ENST00000559119 IGKV3-7A0A075B6H7 116 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 CMC4P56277 68 aaPredicted RBP1.49□□□□□ -2.17
VPS13C-208ENST00000559119 Q8NDZ9 215 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 DNAJC13O75165 2243 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 CACNA1HO95180 2353 aa1.49□□□□□ -2.17
VPS13C-208ENST00000559119 CACNA1EQ15878 2313 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 TRGV1A0A0A0MS02 117 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 A0A1W2PNM2 257 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 HTN1P15515 57 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 DEFB131AP59861 70 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 SPAG11BQ08648 103 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 COA5Q86WW8 74 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 Q8NAQ8 132 aa1.48□□□□□ -2.17
VPS13C-208ENST00000559119 RANBP2P49792 3224 aaKnown RBP1.47□□□□□ -2.17
VPS13C-208ENST00000559119 SPATA8Q6RVD6 105 aa1.47□□□□□ -2.17
VPS13C-208ENST00000559119 DEFB123Q8N688 67 aa1.47□□□□□ -2.17
VPS13C-208ENST00000559119 RETNLBQ9BQ08 111 aa1.47□□□□□ -2.17
VPS13C-208ENST00000559119 ZNF706Q9Y5V0 76 aaPredicted RBP1.47□□□□□ -2.17
VPS13C-208ENST00000559119 SPTBN5Q9NRC6 3674 aaKnown RBP1.47□□□□□ -2.17
VPS13C-208ENST00000559119 CUL9Q8IWT3 2517 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 ZFHX3Q15911 3703 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 DEFB131BA0A096LNP1 70 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 IGKV3OR2-268A0A0C4DH90 116 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 H0Y9P7 68 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 K7EQZ3 153 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 SPINK7P58062 85 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 DEFB109BQ30KR1 87 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 C1orf137Q5JT78 98 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 TP53AIP1Q9HCN2 124 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 SZT2Q5T011 3432 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 SDK1Q7Z5N4 2213 aa1.46□□□□□ -2.18
VPS13C-208ENST00000559119 FAM186AA6NE01 2351 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 CHD9Q3L8U1 2897 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 WDR87Q6ZQQ6 2873 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 A0A1W2PNN7 141 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 H3BUX3 64 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 IGLV1-51P01701 117 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 DEFB112Q30KQ8 113 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 UNQ6190/PRO20217Q6UXQ8 127 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 NOP10Q9NPE3 64 aaKnown RBP1.45□□□□□ -2.18
VPS13C-208ENST00000559119 UNC80Q8N2C7 3258 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 WNK2Q9Y3S1 2297 aa1.45□□□□□ -2.18
VPS13C-208ENST00000559119 PLCE1Q9P212 2302 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 ABCA4P78363 2273 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 PRB1P04280 392 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 SPRR1AP35321 89 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 SPAG11AQ6PDA7 123 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 C4orf3Q8WVX3 66 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 XAGE1AQ9HD64 81 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 CHD7Q9P2D1 2997 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 C6orf48Q9UBA6 75 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 PRO0255Q9UI72 69 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 CNOT1A5YKK6 2376 aaKnown RBP1.44□□□□□ -2.18
VPS13C-208ENST00000559119 DNAH14Q0VDD8 3507 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 GVINP1Q7Z2Y8 2422 aa1.44□□□□□ -2.18
VPS13C-208ENST00000559119 TRANK1O15050 2925 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 COL6A3P12111 3177 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 TNRC18O15417 2968 aaPredicted RBP1.43□□□□□ -2.18
VPS13C-208ENST00000559119 CEP250Q9BV73 2442 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 A8MWP4 228 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 HRES1P13985 223 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 Q6ZRX8 168 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 URB1O60287 2271 aaKnown RBP1.43□□□□□ -2.18
VPS13C-208ENST00000559119 AHCTF1Q8WYP5 2266 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 DOPEY2Q9Y3R5 2298 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 USP34Q70CQ2 3546 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 RIF1Q5UIP0 2472 aaKnown RBP1.43□□□□□ -2.18
VPS13C-208ENST00000559119 PTPRQQ9UMZ3 2332 aa1.43□□□□□ -2.18
VPS13C-208ENST00000559119 EP300Q09472 2414 aaPredicted RBP1.42□□□□□ -2.18
VPS13C-208ENST00000559119 ICE1Q9Y2F5 2266 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 B4DSR2 109 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 UQCR11O14957 56 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 ANGP03950 147 aaKnown RBP1.42□□□□□ -2.18
VPS13C-208ENST00000559119 ACYP2P14621 99 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 LELP1Q5T871 98 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 CLPSL2Q6UWE3 100 aa1.42□□□□□ -2.18
VPS13C-208ENST00000559119 ADM2Q7Z4H4 148 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms