RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 LINC00643Q86TS7 51 aa6.92□□□□□ -1.3
CUX1-217ENST00000558836 FAM236DA0A1B0GTK5 79 aa6.91□□□□□ -1.3
CUX1-217ENST00000558836 FAM236CP0DP71 79 aa6.91□□□□□ -1.3
CUX1-217ENST00000558836 LINC00336Q6ZUF6 198 aa6.91□□□□□ -1.3
CUX1-217ENST00000558836 M0R2N4 97 aa6.9□□□□□ -1.3
CUX1-217ENST00000558836 NKAPP1Q8N9T2 125 aa6.9□□□□□ -1.3
CUX1-217ENST00000558836 JMJD7-PLA2G4BH0Y9G9 81 aa6.9□□□□□ -1.31
CUX1-217ENST00000558836 CCKP06307 115 aa6.9□□□□□ -1.31
CUX1-217ENST00000558836 TRBV7-7A0A0K0K1E9 115 aa6.89□□□□□ -1.31
CUX1-217ENST00000558836 ELOF1P60002 83 aaKnown RBP6.89□□□□□ -1.31
CUX1-217ENST00000558836 C1orf195Q5TG92 126 aa6.89□□□□□ -1.31
CUX1-217ENST00000558836 C7orf33Q8WU49 177 aa6.89□□□□□ -1.31
CUX1-217ENST00000558836 SRRM2Q9UQ35 2752 aaKnown RBP6.89□□□□□ -1.31
CUX1-217ENST00000558836 RPS28P62857 69 aaKnown RBP6.89□□□□□ -1.31
CUX1-217ENST00000558836 RBM3P98179 157 aaKnown RBP6.89□□□□□ -1.31
CUX1-217ENST00000558836 UBE2DNLQ8IWF7 75 aa6.88□□□□□ -1.31
CUX1-217ENST00000558836 MEGF8Q7Z7M0 2845 aa6.88□□□□□ -1.31
CUX1-217ENST00000558836 STARD9Q9P2P6 4700 aa6.88□□□□□ -1.31
CUX1-217ENST00000558836 Q5XG85 94 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 C3orf22Q8N5N4 141 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 A0A087WVE0 104 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 OXTP01178 125 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 KRTAP7-1Q8IUC3 87 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 DEFB105AQ8NG35 78 aa6.87□□□□□ -1.31
CUX1-217ENST00000558836 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.86□□□□□ -1.31
CUX1-217ENST00000558836 UPK3BQ9BT76 320 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 UQCRQO14949 82 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 PSCAO43653 123 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 FAM19A1Q7Z5A9 133 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 LINC00528Q8N1L1 170 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 TGP01266 2768 aa6.86□□□□□ -1.31
CUX1-217ENST00000558836 IGKV2-24A0A0C4DH68 120 aa6.85□□□□□ -1.31
CUX1-217ENST00000558836 RMI2Q96E14 147 aa6.85□□□□□ -1.31
CUX1-217ENST00000558836 Q6ZQT0 140 aa6.84□□□□□ -1.31
CUX1-217ENST00000558836 DSCR8Q96T75 97 aa6.84□□□□□ -1.31
CUX1-217ENST00000558836 APLNQ9ULZ1 77 aa6.84□□□□□ -1.31
CUX1-217ENST00000558836 HIST1H4AP62805 103 aaKnown RBP6.83□□□□□ -1.32
CUX1-217ENST00000558836 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.83□□□□□ -1.32
CUX1-217ENST00000558836 KCNQ1DNQ9H478 68 aa6.83□□□□□ -1.32
CUX1-217ENST00000558836 KMT2AQ03164 3969 aa6.83□□□□□ -1.32
CUX1-217ENST00000558836 B9D2Q9BPU9 175 aa6.83□□□□□ -1.32
CUX1-217ENST00000558836 DYNC2H1Q8NCM8 4307 aaKnown RBP6.82□□□□□ -1.32
CUX1-217ENST00000558836 TLX1NBP0CAT3 122 aa6.82□□□□□ -1.32
CUX1-217ENST00000558836 IMUPQ9GZP8 106 aa6.82□□□□□ -1.32
CUX1-217ENST00000558836 TRBV7-6A0A0J9YX20 115 aa6.81□□□□□ -1.32
CUX1-217ENST00000558836 A0A0U1RQV1 116 aa6.81□□□□□ -1.32
CUX1-217ENST00000558836 A0A096LNI7 61 aa6.81□□□□□ -1.32
CUX1-217ENST00000558836 IGLV1-50A0A075B6I6 118 aa6.8□□□□□ -1.32
CUX1-217ENST00000558836 Q6JHZ5 121 aa6.8□□□□□ -1.32
CUX1-217ENST00000558836 ST20-AS1Q8NBB2 130 aa6.8□□□□□ -1.32
CUX1-217ENST00000558836 Q9BRP9 147 aa6.8□□□□□ -1.32
CUX1-217ENST00000558836 COX7CP15954 63 aa6.8□□□□□ -1.32
CUX1-217ENST00000558836 MRPL55Q7Z7F7 128 aaKnown RBP6.8□□□□□ -1.32
CUX1-217ENST00000558836 CHTF8P0CG12 524 aa6.79□□□□□ -1.32
CUX1-217ENST00000558836 UBL5Q9BZL1 73 aa6.79□□□□□ -1.32
CUX1-217ENST00000558836 LOC110117498A0A087WWA1 95 aa6.79□□□□□ -1.32
CUX1-217ENST00000558836 HAMPP81172 84 aa6.79□□□□□ -1.32
CUX1-217ENST00000558836 ETDCA0A1B0GVM5 59 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 A0A1W2PNN7 141 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 ERC2-IT1O76042 136 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 FUSP35637 526 aaKnown RBP eCLIP6.78□□□□□ -1.32
CUX1-217ENST00000558836 CYSTM1Q9H1C7 97 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 Q6ZRX8 168 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 SCXQ7RTU7 201 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 Q8N377 158 aa6.78□□□□□ -1.32
CUX1-217ENST00000558836 TRBV7-4A0A0J9YYF1 115 aa6.77□□□□□ -1.33
CUX1-217ENST00000558836 KRTAP4-16G5E9R7 235 aaPredicted RBP6.77□□□□□ -1.33
CUX1-217ENST00000558836 PLA2G2DQ9UNK4 145 aa6.77□□□□□ -1.33
CUX1-217ENST00000558836 DPH3Q96FX2 82 aa6.76□□□□□ -1.33
CUX1-217ENST00000558836 CRYGAP11844 174 aa6.76□□□□□ -1.33
CUX1-217ENST00000558836 UBE2BP63146 152 aa6.76□□□□□ -1.33
CUX1-217ENST00000558836 Q6ZVQ6 151 aa6.76□□□□□ -1.33
CUX1-217ENST00000558836 C3orf84H3BNL1 204 aa6.75□□□□□ -1.33
CUX1-217ENST00000558836 PRLHP81277 87 aa6.75□□□□□ -1.33
CUX1-217ENST00000558836 IGLV5-37A0A075B6J1 123 aa6.74□□□□□ -1.33
CUX1-217ENST00000558836 LINC01547P58512 204 aaPredicted RBP6.74□□□□□ -1.33
CUX1-217ENST00000558836 NBDYA0A0U1RRE5 68 aa6.74□□□□□ -1.33
CUX1-217ENST00000558836 ATOX1O00244 68 aa6.74□□□□□ -1.33
CUX1-217ENST00000558836 PRYO14603 147 aa6.74□□□□□ -1.33
CUX1-217ENST00000558836 SPRR1AP35321 89 aa6.74□□□□□ -1.33
CUX1-217ENST00000558836 C16orf90A8MZG2 172 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 GHRHP01286 108 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 REG3GQ6UW15 175 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 A0A0G2JQZ4 141 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 H3BQ85 93 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 KRTAP11-1Q8IUC1 163 aa6.73□□□□□ -1.33
CUX1-217ENST00000558836 CNBPP62633 177 aaKnown RBP6.72□□□□□ -1.33
CUX1-217ENST00000558836 PHF5AQ7RTV0 110 aaKnown RBP6.72□□□□□ -1.33
CUX1-217ENST00000558836 DHRS4-AS1Q9P1J3 65 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 DNAH2Q9P225 4427 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 VPS13DQ5THJ4 4388 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 PDE6GP18545 87 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 FBN3Q75N90 2809 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 TMEM258P61165 79 aa6.72□□□□□ -1.33
CUX1-217ENST00000558836 NUPR2A6NF83 97 aa6.71□□□□□ -1.34
CUX1-217ENST00000558836 HECTD4Q9Y4D8 3996 aa6.71□□□□□ -1.34
CUX1-217ENST00000558836 LRCOL1A6NCL2 159 aa6.71□□□□□ -1.34
CUX1-217ENST00000558836 PANO1I0J062 215 aa6.71□□□□□ -1.34
CUX1-217ENST00000558836 H3BS24 57 aa6.7□□□□□ -1.34
CUX1-217ENST00000558836 Q8N9L7 120 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms