RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 A0A1B0GW54 56 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 ANAPC11Q9NYG5 84 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 IGLV6-57P01721 117 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 DSCR10P59022 87 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 LINC00528Q8N1L1 170 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 C9orf163Q8N9P6 203 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 CEP350Q5VT06 3117 aa5.41□□□□□ -1.54
SYNE2-220ENST00000555612 PRR34Q9NV39 138 aa5.4□□□□□ -1.54
SYNE2-220ENST00000555612 TRAV22A0A0B4J277 110 aa5.4□□□□□ -1.54
SYNE2-220ENST00000555612 C8orf87E5RJ46 101 aa5.4□□□□□ -1.54
SYNE2-220ENST00000555612 CFAP46Q8IYW2 2715 aa5.4□□□□□ -1.54
SYNE2-220ENST00000555612 CASC10Q5T4H9 136 aa5.4□□□□□ -1.55
SYNE2-220ENST00000555612 OBSCN-AS1Q96MR7 158 aa5.4□□□□□ -1.55
SYNE2-220ENST00000555612 LOC110117498A0A087WWA1 95 aa5.4□□□□□ -1.55
SYNE2-220ENST00000555612 SPAG11AQ6PDA7 123 aa5.4□□□□□ -1.55
SYNE2-220ENST00000555612 KCNQ1DNQ9H478 68 aa5.39□□□□□ -1.55
SYNE2-220ENST00000555612 TRBV7-4A0A0J9YYF1 115 aa5.39□□□□□ -1.55
SYNE2-220ENST00000555612 C9orf129Q5T035 196 aaKnown RBP5.39□□□□□ -1.55
SYNE2-220ENST00000555612 HELZ2Q9BYK8 2649 aaKnown RBP5.39□□□□□ -1.55
SYNE2-220ENST00000555612 UTRNP46939 3433 aa5.38□□□□□ -1.55
SYNE2-220ENST00000555612 RPS28P62857 69 aaKnown RBP5.38□□□□□ -1.55
SYNE2-220ENST00000555612 IGLV7-43P04211 117 aa5.38□□□□□ -1.55
SYNE2-220ENST00000555612 A8MWP4 228 aa5.38□□□□□ -1.55
SYNE2-220ENST00000555612 UNC79Q9P2D8 2635 aa5.38□□□□□ -1.55
SYNE2-220ENST00000555612 LINC00612Q8N6U2 182 aa5.38□□□□□ -1.55
SYNE2-220ENST00000555612 MRPL34Q9BQ48 92 aaKnown RBP5.38□□□□□ -1.55
SYNE2-220ENST00000555612 SSBP3-AS1Q7Z2R9 100 aa5.37□□□□□ -1.55
SYNE2-220ENST00000555612 PSORS1C2Q9UIG4 136 aa5.37□□□□□ -1.55
SYNE2-220ENST00000555612 IGFL1Q6UW32 110 aa5.37□□□□□ -1.55
SYNE2-220ENST00000555612 ZNF575Q86XF7 245 aa5.37□□□□□ -1.55
SYNE2-220ENST00000555612 A0A0G2JQZ4 141 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 A0A1W2PNN7 141 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 CHD6Q8TD26 2715 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 ATRQ13535 2644 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 K7EQZ3 153 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 TNP2Q05952 138 aa5.36□□□□□ -1.55
SYNE2-220ENST00000555612 PCNTO95613 3336 aa5.35□□□□□ -1.55
SYNE2-220ENST00000555612 LOC101927531A0A1B0GV80 90 aa5.35□□□□□ -1.55
SYNE2-220ENST00000555612 MAST4O15021 2626 aa5.35□□□□□ -1.55
SYNE2-220ENST00000555612 SPINT4Q6UDR6 99 aa5.34□□□□□ -1.55
SYNE2-220ENST00000555612 H3BPC8 53 aa5.34□□□□□ -1.55
SYNE2-220ENST00000555612 IGLV5-37A0A075B6J1 123 aa5.33□□□□□ -1.56
SYNE2-220ENST00000555612 TLX1NBP0CAT3 122 aa5.32□□□□□ -1.56
SYNE2-220ENST00000555612 C8orf17Q9NRJ1 99 aa5.32□□□□□ -1.56
SYNE2-220ENST00000555612 CNBPP62633 177 aaKnown RBP5.32□□□□□ -1.56
SYNE2-220ENST00000555612 EIF4EBP3O60516 100 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-220ENST00000555612 FLNAP21333 2647 aaKnown RBP5.31□□□□□ -1.56
SYNE2-220ENST00000555612 RBM12B-AS1Q9P1G2 102 aa5.31□□□□□ -1.56
SYNE2-220ENST00000555612 A0A1B0GVX0 72 aa5.3□□□□□ -1.56
SYNE2-220ENST00000555612 SPRR4Q96PI1 79 aa5.3□□□□□ -1.56
SYNE2-220ENST00000555612 Q8N377 158 aa5.3□□□□□ -1.56
SYNE2-220ENST00000555612 PLA2G2DQ9UNK4 145 aa5.29□□□□□ -1.56
SYNE2-220ENST00000555612 PRRC2CQ9Y520 2896 aaKnown RBP5.29□□□□□ -1.56
SYNE2-220ENST00000555612 IGSF10Q6WRI0 2623 aa5.29□□□□□ -1.56
SYNE2-220ENST00000555612 ERC2-IT1O76042 136 aa5.28□□□□□ -1.56
SYNE2-220ENST00000555612 PRR15Q8IV56 129 aa5.28□□□□□ -1.56
SYNE2-220ENST00000555612 ITPR3Q14573 2671 aa5.28□□□□□ -1.56
SYNE2-220ENST00000555612 FLNCQ14315 2725 aa5.27□□□□□ -1.57
SYNE2-220ENST00000555612 DNAH12Q6ZR08 3092 aa5.26□□□□□ -1.57
SYNE2-220ENST00000555612 LINC01554Q52M75 96 aa5.25□□□□□ -1.57
SYNE2-220ENST00000555612 PRR26Q8N8Z3 221 aa5.25□□□□□ -1.57
SYNE2-220ENST00000555612 Q6ZSA8 131 aa5.24□□□□□ -1.57
SYNE2-220ENST00000555612 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.24□□□□□ -1.57
SYNE2-220ENST00000555612 IGLV7-46A0A075B6I9 117 aa5.24□□□□□ -1.57
SYNE2-220ENST00000555612 M0R2T5 61 aa5.23□□□□□ -1.57
SYNE2-220ENST00000555612 COA5Q86WW8 74 aa5.23□□□□□ -1.57
SYNE2-220ENST00000555612 CENPEQ02224 2701 aa5.22□□□□□ -1.57
SYNE2-220ENST00000555612 BPTFQ12830 3046 aa5.22□□□□□ -1.57
SYNE2-220ENST00000555612 Q8N1X5 172 aa5.21□□□□□ -1.58
SYNE2-220ENST00000555612 FAM104AQ969W3 186 aa5.2□□□□□ -1.58
SYNE2-220ENST00000555612 PRO0628Q9UI54 55 aa5.2□□□□□ -1.58
SYNE2-220ENST00000555612 IGLV5-48A0A075B6I7 105 aa5.2□□□□□ -1.58
SYNE2-220ENST00000555612 C4orf26Q17RF5 130 aa5.19□□□□□ -1.58
SYNE2-220ENST00000555612 A0A1W2PNM2 257 aa5.18□□□□□ -1.58
SYNE2-220ENST00000555612 KLKP1Q107X0 134 aa5.18□□□□□ -1.58
SYNE2-220ENST00000555612 ITPR1Q14643 2758 aa5.18□□□□□ -1.58
SYNE2-220ENST00000555612 WIPF1O43516 503 aa5.18□□□□□ -1.58
SYNE2-220ENST00000555612 SETXQ7Z333 2677 aaKnown RBP5.17□□□□□ -1.58
SYNE2-220ENST00000555612 A0A0D9SG42 100 aa5.16□□□□□ -1.58
SYNE2-220ENST00000555612 UQCR11O14957 56 aa5.16□□□□□ -1.58
SYNE2-220ENST00000555612 TEP1Q99973 2627 aaKnown RBP5.15□□□□□ -1.58
SYNE2-220ENST00000555612 STAB1Q9NY15 2570 aa5.15□□□□□ -1.59
SYNE2-220ENST00000555612 LCE6AA0A183 80 aa5.14□□□□□ -1.59
SYNE2-220ENST00000555612 A8MUN3 132 aa5.14□□□□□ -1.59
SYNE2-220ENST00000555612 Q5VSD8 79 aa5.14□□□□□ -1.59
SYNE2-220ENST00000555612 CRIPTQ9P021 101 aa5.13□□□□□ -1.59
SYNE2-220ENST00000555612 GCN1Q92616 2671 aaKnown RBP5.13□□□□□ -1.59
SYNE2-220ENST00000555612 PLAC8Q9NZF1 115 aa5.13□□□□□ -1.59
SYNE2-220ENST00000555612 CD164Q04900 197 aa5.12□□□□□ -1.59
SYNE2-220ENST00000555612 DSPP15924 2871 aaKnown RBP5.12□□□□□ -1.59
SYNE2-220ENST00000555612 MIR22HGQ0VDD5 57 aa5.12□□□□□ -1.59
SYNE2-220ENST00000555612 UBR5O95071 2799 aaPredicted RBP5.12□□□□□ -1.59
SYNE2-220ENST00000555612 FAM229BQ4G0N7 80 aa5.11□□□□□ -1.59
SYNE2-220ENST00000555612 AKAP13Q12802 2813 aa5.1□□□□□ -1.59
SYNE2-220ENST00000555612 KRTAP1-5Q9BYS1 174 aa5.08□□□□□ -1.6
SYNE2-220ENST00000555612 H7BZZ5 65 aa5.08□□□□□ -1.6
SYNE2-220ENST00000555612 CR1P17927 2039 aa5.08□□□□□ -1.6
SYNE2-220ENST00000555612 C5orf42Q9H799 3197 aa5.07□□□□□ -1.6
SYNE2-220ENST00000555612 KRTAP10-1P60331 282 aa5.07□□□□□ -1.6
SYNE2-220ENST00000555612 KRTAP10-2P60368 255 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms