RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 DNAH12Q6ZR08 3092 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 APC2O95996 2303 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 A0A1B0GWA3 101 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 GNGT2O14610 69 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 TRAPPC2P0DI81 140 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 TRAPPC2BP0DI82 140 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 FAIMQ9NVQ4 179 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 FANCAO15360 1455 aa-0.38□□□□□ -2.47
SCFD1-216ENST00000555550 CFAP54Q96N23 3096 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 CEP350Q5VT06 3117 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 IQSEC2Q5JU85 1478 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 RAPGEF2Q9Y4G8 1499 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 DNAH1Q9P2D7 4330 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 H0Y9P7 68 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 SYS1-DBNDD2H3BUS1 97 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 NDUFC1O43677 76 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 KRTDAPP60985 99 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 C6orf201Q7Z4U5 140 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 DEFB105AQ8NG35 78 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 TCEAL7Q9BRU2 100 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 PRO1933Q9H354 126 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 PSENENQ9NZ42 101 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 HIGD1BQ9P298 99 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 LRRC37AA6NMS7 1700 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 ADGRG4Q8IZF6 3080 aa-0.39□□□□□ -2.47
SCFD1-216ENST00000555550 DNAH6Q9C0G6 4158 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 RGPD1P0DJD0 1748 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 MON2Q7Z3U7 1717 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 A0A1B0GU69 56 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 S100A10P60903 97 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 DEFB107AQ8IZN7 70 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 ALKQ9UM73 1620 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 CEP162Q5TB80 1403 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 C5P01031 1676 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 ANKRD36A6QL64 1941 aa-0.4□□□□□ -2.47
SCFD1-216ENST00000555550 CENPEQ02224 2701 aa-0.41□□□□□ -2.47
SCFD1-216ENST00000555550 TMEM131LA2VDJ0 1609 aa-0.41□□□□□ -2.47
SCFD1-216ENST00000555550 ATOX1O00244 68 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 ARMS2P0C7Q2 107 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 S100A3P33764 101 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 H1FX-AS1Q4G0G2 97 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 PMCHL2Q9BQD1 86 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 C20orf78Q9BR46 151 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 DPY30Q9C005 99 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 ZNF831Q5JPB2 1677 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 ADAMTS12P58397 1594 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 CRYBG1Q9Y4K1 1723 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 CSMD2Q7Z408 3487 aa-0.41□□□□□ -2.48
SCFD1-216ENST00000555550 USP32Q8NFA0 1604 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 PTPN23Q9H3S7 1636 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 AKAP12Q02952 1782 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 ABCC2Q92887 1545 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 KRTAP19-7Q3SYF9 63 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 PSMG4Q5JS54 123 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 UBE2D4Q9Y2X8 147 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 MAGI2Q86UL8 1455 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 MYO3AQ8NEV4 1616 aa-0.42□□□□□ -2.48
SCFD1-216ENST00000555550 NEXMIFQ5QGS0 1516 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 CCNB3Q8WWL7 1395 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 QSER1Q2KHR3 1735 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 F8WEM9 126 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 M0R2T5 61 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 PMCHL1Q16048 86 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 DNAH9Q9NYC9 4486 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 ATP10BO94823 1461 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 CHD7Q9P2D1 2997 aa-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 CLTCQ00610 1675 aaKnown RBP-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 APOBP04114 4563 aaKnown RBP-0.43□□□□□ -2.48
SCFD1-216ENST00000555550 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 CPSF4LA6NMK7 179 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 H3BQF6 201 aa-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 M0R143 59 aa-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 MRPL34Q9BQ48 92 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 VPS13BQ7Z7G8 4022 aa-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 CEP250Q9BV73 2442 aa-0.44□□□□□ -2.48
SCFD1-216ENST00000555550 VPS13DQ5THJ4 4388 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 SPTAN1Q13813 2472 aaKnown RBP-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 ATP7BP35670 1465 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 UQCRHP07919 91 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 IGLC2P0DOY2 106 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 IGLC3P0DOY3 106 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 USMG5Q96IX5 58 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 APLNQ9ULZ1 77 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 CEP290O15078 2479 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 DNAH3Q8TD57 4116 aa-0.45□□□□□ -2.48
SCFD1-216ENST00000555550 MYH4Q9Y623 1939 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 AKAP9Q99996 3911 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 PKHD1L1Q86WI1 4243 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 VPS13CQ709C8 3753 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 RGPD2P0DJD1 1756 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 SPINK4O60575 86 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 LINC00032P0C843 101 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 HMGN3Q15651 99 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 TTC37Q6PGP7 1564 aa-0.46□□□□□ -2.48
SCFD1-216ENST00000555550 KNL1Q8NG31 2342 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 S100A8P05109 93 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 COX8AP10176 69 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 PKIAP61925 76 aa-0.47□□□□□ -2.48
SCFD1-216ENST00000555550 DEFB112Q30KQ8 113 aa-0.47□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms