RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 GAGE2EQ4V326 116 aa8.9□□□□□ -0.98
SHMT2-217ENST00000555116 SOSTDC1Q6X4U4 206 aa8.9□□□□□ -0.98
SHMT2-217ENST00000555116 COPS9Q8WXC6 57 aa8.9□□□□□ -0.98
SHMT2-217ENST00000555116 GAGE2DQ9UEU5 116 aa8.9□□□□□ -0.98
SHMT2-217ENST00000555116 TCL1BO95988 128 aa8.89□□□□□ -0.99
SHMT2-217ENST00000555116 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
SHMT2-217ENST00000555116 Q1RN00 199 aa8.89□□□□□ -0.99
SHMT2-217ENST00000555116 TEN1Q86WV5 123 aa8.89□□□□□ -0.99
SHMT2-217ENST00000555116 C7orf33Q8WU49 177 aa8.88□□□□□ -0.99
SHMT2-217ENST00000555116 PPDPFQ9H3Y8 114 aa8.88□□□□□ -0.99
SHMT2-217ENST00000555116 FAM168BA1KXE4 195 aa8.87□□□□□ -0.99
SHMT2-217ENST00000555116 M0QXV9 152 aa8.87□□□□□ -0.99
SHMT2-217ENST00000555116 SMCPP49901 116 aaPredicted RBP8.87□□□□□ -0.99
SHMT2-217ENST00000555116 C9orf129Q5T035 196 aaKnown RBP8.87□□□□□ -0.99
SHMT2-217ENST00000555116 TRIAP1O43715 76 aa8.86□□□□□ -0.99
SHMT2-217ENST00000555116 KRTAP7-1Q8IUC3 87 aa8.86□□□□□ -0.99
SHMT2-217ENST00000555116 RPL13AP40429 203 aaKnown RBP8.85□□□□□ -0.99
SHMT2-217ENST00000555116 MIR7-3HGQ8N6C7 128 aa8.85□□□□□ -0.99
SHMT2-217ENST00000555116 LINC00158P58513 81 aa8.85□□□□□ -0.99
SHMT2-217ENST00000555116 PKHD1L1Q86WI1 4243 aa8.85□□□□□ -0.99
SHMT2-217ENST00000555116 PHF5AQ7RTV0 110 aaKnown RBP8.84□□□□□ -0.99
SHMT2-217ENST00000555116 PRR3P79522 188 aaKnown RBP8.83□□□□□ -1
SHMT2-217ENST00000555116 FAM19A5Q7Z5A7 132 aaPredicted RBP8.83□□□□□ -1
SHMT2-217ENST00000555116 CDIP1Q9H305 208 aa8.83□□□□□ -1
SHMT2-217ENST00000555116 XAGE1AQ9HD64 81 aa8.83□□□□□ -1
SHMT2-217ENST00000555116 PFN2P35080 140 aa8.82□□□□□ -1
SHMT2-217ENST00000555116 SLC25A20O43772 301 aa8.81□□□□□ -1
SHMT2-217ENST00000555116 COX6CP09669 75 aa8.81□□□□□ -1
SHMT2-217ENST00000555116 ATXN8Q156A1 80 aa8.81□□□□□ -1
SHMT2-217ENST00000555116 SERTAD4-AS1Q5TG53 156 aa8.81□□□□□ -1
SHMT2-217ENST00000555116 ANKRD29Q8N6D5 301 aa8.8□□□□□ -1
SHMT2-217ENST00000555116 SND1-IT1Q9HBX3 110 aa8.8□□□□□ -1
SHMT2-217ENST00000555116 MYCBP2O75592 4640 aa8.79□□□□□ -1
SHMT2-217ENST00000555116 KRTAP11-1Q8IUC1 163 aa8.79□□□□□ -1
SHMT2-217ENST00000555116 C9JAW5 83 aa8.79□□□□□ -1
SHMT2-217ENST00000555116 IGKV2-28A0A075B6P5 120 aa8.78□□□□□ -1
SHMT2-217ENST00000555116 TRAV13-2A0A0B4J235 113 aa8.78□□□□□ -1
SHMT2-217ENST00000555116 IGKV2D-28P01615 120 aa8.78□□□□□ -1
SHMT2-217ENST00000555116 LINC01600Q96MT4 127 aa8.78□□□□□ -1
SHMT2-217ENST00000555116 PSORS1C2Q9UIG4 136 aa8.78□□□□□ -1
SHMT2-217ENST00000555116 MT-ATP8P03928 68 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 COX17Q14061 63 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 LINC00337Q8N6G1 96 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 CLEC2BQ92478 149 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 PLA2G2DQ9UNK4 145 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 C22orf24Q9Y442 160 aa8.77□□□□□ -1.01
SHMT2-217ENST00000555116 DMBT1Q9UGM3 2413 aaPredicted RBP8.76□□□□□ -1.01
SHMT2-217ENST00000555116 LST1O00453 97 aa8.76□□□□□ -1.01
SHMT2-217ENST00000555116 TRBV10-2A0A0K0K1G8 114 aa8.74□□□□□ -1.01
SHMT2-217ENST00000555116 KRTAP29-1A8MX34 341 aaPredicted RBP8.74□□□□□ -1.01
SHMT2-217ENST00000555116 IGLV5-37A0A075B6J1 123 aa8.73□□□□□ -1.01
SHMT2-217ENST00000555116 UBE2BP63146 152 aa8.73□□□□□ -1.01
SHMT2-217ENST00000555116 SNCGO76070 127 aa8.72□□□□□ -1.01
SHMT2-217ENST00000555116 RPL28P46779 137 aaKnown RBP8.72□□□□□ -1.01
SHMT2-217ENST00000555116 C1orf137Q5JT78 98 aa8.72□□□□□ -1.01
SHMT2-217ENST00000555116 LRP1Q07954 4544 aaKnown RBP8.72□□□□□ -1.01
SHMT2-217ENST00000555116 OXTP01178 125 aa8.72□□□□□ -1.01
SHMT2-217ENST00000555116 MRPL55Q7Z7F7 128 aaKnown RBP8.72□□□□□ -1.01
SHMT2-217ENST00000555116 H3BT86 120 aa8.71□□□□□ -1.01
SHMT2-217ENST00000555116 SPINK6Q6UWN8 80 aa8.71□□□□□ -1.01
SHMT2-217ENST00000555116 ANAPC13Q9BS18 74 aa8.71□□□□□ -1.01
SHMT2-217ENST00000555116 FAT3Q8TDW7 4589 aa8.71□□□□□ -1.02
SHMT2-217ENST00000555116 VPREB1P12018 145 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 Q8NDZ9 215 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 IGLV7-43P04211 117 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 Q6Q795 121 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 SMIM11BQ8TCY0 68 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 LINC00167Q96N53 147 aa8.7□□□□□ -1.02
SHMT2-217ENST00000555116 NDUFC2O95298 119 aa8.68□□□□□ -1.02
SHMT2-217ENST00000555116 NKAPP1Q8N9T2 125 aa8.68□□□□□ -1.02
SHMT2-217ENST00000555116 J3QL48 77 aa8.68□□□□□ -1.02
SHMT2-217ENST00000555116 OR13C6PQ8NH95 151 aa8.68□□□□□ -1.02
SHMT2-217ENST00000555116 RPL37AP8A6NKH3 93 aa8.67□□□□□ -1.02
SHMT2-217ENST00000555116 TRACP01848 142 aa8.67□□□□□ -1.02
SHMT2-217ENST00000555116 FAM218AQ96MZ4 157 aa8.67□□□□□ -1.02
SHMT2-217ENST00000555116 H0YGX0 51 aa8.64□□□□□ -1.03
SHMT2-217ENST00000555116 TEX49A0A1B0GTD5 131 aa8.64□□□□□ -1.03
SHMT2-217ENST00000555116 FAM240AA0A1B0GVK7 77 aa8.64□□□□□ -1.03
SHMT2-217ENST00000555116 MT1HL1P0DM35 61 aa8.64□□□□□ -1.03
SHMT2-217ENST00000555116 REG3GQ6UW15 175 aa8.63□□□□□ -1.03
SHMT2-217ENST00000555116 IGLV1-50A0A075B6I6 118 aa8.62□□□□□ -1.03
SHMT2-217ENST00000555116 NDUFV3P56181 108 aaKnown RBP8.62□□□□□ -1.03
SHMT2-217ENST00000555116 DIRC1Q969H9 104 aa8.62□□□□□ -1.03
SHMT2-217ENST00000555116 TMEM126AQ9H061 195 aa8.62□□□□□ -1.03
SHMT2-217ENST00000555116 BCE1O60756 84 aa8.62□□□□□ -1.03
SHMT2-217ENST00000555116 H0Y9J4 135 aa8.61□□□□□ -1.03
SHMT2-217ENST00000555116 NCR3O14931 201 aa8.61□□□□□ -1.03
SHMT2-217ENST00000555116 ACYP1P07311 99 aa8.61□□□□□ -1.03
SHMT2-217ENST00000555116 M0R378 163 aa8.6□□□□□ -1.03
SHMT2-217ENST00000555116 ZNF861PO60384 105 aa8.6□□□□□ -1.03
SHMT2-217ENST00000555116 BAALC-AS2P0C853 105 aa8.6□□□□□ -1.03
SHMT2-217ENST00000555116 HERC1Q15751 4861 aa8.58□□□□□ -1.04
SHMT2-217ENST00000555116 S100A7L2Q5SY68 101 aa8.57□□□□□ -1.04
SHMT2-217ENST00000555116 KRTAP13-1Q8IUC0 172 aa8.57□□□□□ -1.04
SHMT2-217ENST00000555116 DNAL4O96015 105 aa8.57□□□□□ -1.04
SHMT2-217ENST00000555116 IGLV6-57P01721 117 aa8.56□□□□□ -1.04
SHMT2-217ENST00000555116 TNXBP22105 4242 aa8.56□□□□□ -1.04
SHMT2-217ENST00000555116 KRTAP1-4P0C5Y4 121 aa8.55□□□□□ -1.04
SHMT2-217ENST00000555116 KRTAP10-8P60410 259 aa8.55□□□□□ -1.04
SHMT2-217ENST00000555116 IMUPQ9GZP8 106 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms