RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 SMCR5Q8TEV8 140 aa11.95□□□□□ -0.5
FOXA1-203ENST00000553751 TRAV23DV6A0A075B6W5 121 aa11.93□□□□□ -0.5
FOXA1-203ENST00000553751 SCGB1D4Q6XE38 83 aa11.93□□□□□ -0.5
FOXA1-203ENST00000553751 PCP2Q8IVA1 136 aa11.93□□□□□ -0.5
FOXA1-203ENST00000553751 SPANXDQ9BXN6 97 aa11.92□□□□□ -0.5
FOXA1-203ENST00000553751 ZNF706Q9Y5V0 76 aaPredicted RBP11.92□□□□□ -0.5
FOXA1-203ENST00000553751 SNRPEP62304 92 aaKnown RBP11.91□□□□□ -0.5
FOXA1-203ENST00000553751 Q6ZRX8 168 aa11.91□□□□□ -0.5
FOXA1-203ENST00000553751 ZNF73O43830 326 aaPredicted RBP11.89□□□□□ -0.51
FOXA1-203ENST00000553751 C3orf22Q8N5N4 141 aa11.89□□□□□ -0.51
FOXA1-203ENST00000553751 Q9BRP9 147 aa11.89□□□□□ -0.51
FOXA1-203ENST00000553751 TSPAN13O95857 204 aa11.88□□□□□ -0.51
FOXA1-203ENST00000553751 ERC2-IT1O76042 136 aa11.87□□□□□ -0.51
FOXA1-203ENST00000553751 C5orf52A6NGY3 159 aa11.86□□□□□ -0.51
FOXA1-203ENST00000553751 LINC00304Q8N9R0 145 aa11.86□□□□□ -0.51
FOXA1-203ENST00000553751 LINC00483Q53H64 154 aa11.85□□□□□ -0.51
FOXA1-203ENST00000553751 OR13C6PQ8NH95 151 aa11.85□□□□□ -0.51
FOXA1-203ENST00000553751 PPDPFQ9H3Y8 114 aa11.85□□□□□ -0.51
FOXA1-203ENST00000553751 CBY1Q9Y3M2 126 aa11.85□□□□□ -0.51
FOXA1-203ENST00000553751 LPAP08519 4548 aa11.85□□□□□ -0.51
FOXA1-203ENST00000553751 IFITM1P13164 125 aa11.84□□□□□ -0.51
FOXA1-203ENST00000553751 Q6ZVH6 145 aa11.84□□□□□ -0.51
FOXA1-203ENST00000553751 LINC00518Q8N0U6 118 aa11.84□□□□□ -0.51
FOXA1-203ENST00000553751 JOSD1Q15040 202 aaPredicted RBP11.83□□□□□ -0.52
FOXA1-203ENST00000553751 COPS9Q8WXC6 57 aa11.83□□□□□ -0.52
FOXA1-203ENST00000553751 HSBP1L1C9JCN9 74 aa11.82□□□□□ -0.52
FOXA1-203ENST00000553751 GAGE2AQ6NT46 116 aa11.81□□□□□ -0.52
FOXA1-203ENST00000553751 PRR4Q16378 134 aa11.8□□□□□ -0.52
FOXA1-203ENST00000553751 MUSTN1Q8IVN3 82 aa11.8□□□□□ -0.52
FOXA1-203ENST00000553751 SCGB1D1O95968 90 aa11.78□□□□□ -0.52
FOXA1-203ENST00000553751 HINT1P49773 126 aaPredicted RBP11.78□□□□□ -0.52
FOXA1-203ENST00000553751 RNF213Q63HN8 5207 aa11.78□□□□□ -0.52
FOXA1-203ENST00000553751 CTAG1AP78358 180 aa11.75□□□□□ -0.53
FOXA1-203ENST00000553751 C6orf99Q4VX62 202 aa11.75□□□□□ -0.53
FOXA1-203ENST00000553751 ELOF1P60002 83 aaKnown RBP11.74□□□□□ -0.53
FOXA1-203ENST00000553751 ST20-AS1Q8NBB2 130 aa11.74□□□□□ -0.53
FOXA1-203ENST00000553751 Q8NBF4 154 aa11.74□□□□□ -0.53
FOXA1-203ENST00000553751 DHRS4-AS1Q9P1J3 65 aa11.73□□□□□ -0.53
FOXA1-203ENST00000553751 A6NDN8 102 aa11.72□□□□□ -0.53
FOXA1-203ENST00000553751 COX7BP24311 80 aa11.72□□□□□ -0.53
FOXA1-203ENST00000553751 SPAG11AQ6PDA7 123 aa11.72□□□□□ -0.53
FOXA1-203ENST00000553751 RETNLBQ9BQ08 111 aa11.72□□□□□ -0.53
FOXA1-203ENST00000553751 IGLV9-49A0A0B4J1Y8 123 aa11.71□□□□□ -0.53
FOXA1-203ENST00000553751 MOBPQ13875 183 aa11.71□□□□□ -0.53
FOXA1-203ENST00000553751 TRBV7-6A0A0J9YX20 115 aa11.69□□□□□ -0.54
FOXA1-203ENST00000553751 TRAV13-2A0A0B4J235 113 aa11.68□□□□□ -0.54
FOXA1-203ENST00000553751 COX8AP10176 69 aa11.68□□□□□ -0.54
FOXA1-203ENST00000553751 SPRR1BP22528 89 aa11.66□□□□□ -0.54
FOXA1-203ENST00000553751 C4orf48Q5BLP8 95 aa11.66□□□□□ -0.54
FOXA1-203ENST00000553751 SSBP3-AS1Q7Z2R9 100 aa11.66□□□□□ -0.54
FOXA1-203ENST00000553751 A0A1B0GWB2 263 aa11.65□□□□□ -0.54
FOXA1-203ENST00000553751 A4D1N5 150 aa11.65□□□□□ -0.54
FOXA1-203ENST00000553751 DLEU1O43261 78 aa11.63□□□□□ -0.55
FOXA1-203ENST00000553751 SPINK1P00995 79 aa11.63□□□□□ -0.55
FOXA1-203ENST00000553751 SMIM11BQ8TCY0 68 aa11.63□□□□□ -0.55
FOXA1-203ENST00000553751 C9orf153Q5TBE3 101 aa11.62□□□□□ -0.55
FOXA1-203ENST00000553751 PAM16Q9Y3D7 125 aa11.62□□□□□ -0.55
FOXA1-203ENST00000553751 SPATA45Q537H7 98 aa11.61□□□□□ -0.55
FOXA1-203ENST00000553751 C14orf144Q96I85 54 aa11.6□□□□□ -0.55
FOXA1-203ENST00000553751 HIST1H4GQ99525 98 aa11.6□□□□□ -0.55
FOXA1-203ENST00000553751 SLC25A34Q6PIV7 304 aa11.59□□□□□ -0.55
FOXA1-203ENST00000553751 VAMP8Q9BV40 100 aa11.59□□□□□ -0.55
FOXA1-203ENST00000553751 RPS29P62273 56 aaKnown RBP11.58□□□□□ -0.56
FOXA1-203ENST00000553751 IGLV7-46A0A075B6I9 117 aa11.57□□□□□ -0.56
FOXA1-203ENST00000553751 DEFB105AQ8NG35 78 aa11.56□□□□□ -0.56
FOXA1-203ENST00000553751 C12orf57Q99622 126 aa11.56□□□□□ -0.56
FOXA1-203ENST00000553751 TEX49A0A1B0GTD5 131 aa11.55□□□□□ -0.56
FOXA1-203ENST00000553751 LINC01547P58512 204 aaPredicted RBP11.55□□□□□ -0.56
FOXA1-203ENST00000553751 TAL2Q16559 108 aa11.55□□□□□ -0.56
FOXA1-203ENST00000553751 TPRXLQ17RH7 258 aa11.55□□□□□ -0.56
FOXA1-203ENST00000553751 HIGD1BQ9P298 99 aa11.55□□□□□ -0.56
FOXA1-203ENST00000553751 LAMTOR3Q9UHA4 124 aa11.55□□□□□ -0.56
FOXA1-203ENST00000553751 IGLV5-48A0A075B6I7 105 aa11.54□□□□□ -0.56
FOXA1-203ENST00000553751 FP248Q71RG6 208 aaPredicted RBP11.54□□□□□ -0.56
FOXA1-203ENST00000553751 C2orf91Q6ZV80 131 aa11.53□□□□□ -0.56
FOXA1-203ENST00000553751 Q8N377 158 aa11.53□□□□□ -0.56
FOXA1-203ENST00000553751 NHP2Q9NX24 153 aaKnown RBP11.53□□□□□ -0.56
FOXA1-203ENST00000553751 Q1RN00 199 aa11.52□□□□□ -0.57
FOXA1-203ENST00000553751 VAMP3Q15836 100 aa11.51□□□□□ -0.57
FOXA1-203ENST00000553751 SMIM29Q86T20 159 aa11.51□□□□□ -0.57
FOXA1-203ENST00000553751 PYY3Q5JQD4 70 aa11.5□□□□□ -0.57
FOXA1-203ENST00000553751 TMA7Q9Y2S6 64 aaKnown RBP11.5□□□□□ -0.57
FOXA1-203ENST00000553751 LINC00575Q6W349 94 aa11.49□□□□□ -0.57
FOXA1-203ENST00000553751 SLC25A20O43772 301 aa11.47□□□□□ -0.57
FOXA1-203ENST00000553751 CFC1BP0CG36 223 aa11.47□□□□□ -0.57
FOXA1-203ENST00000553751 CFC1P0CG37 223 aa11.47□□□□□ -0.57
FOXA1-203ENST00000553751 MUC2Q02817 5179 aa11.47□□□□□ -0.57
FOXA1-203ENST00000553751 CDIP1Q9H305 208 aa11.46□□□□□ -0.57
FOXA1-203ENST00000553751 A0A0B4J2C4 111 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 hADV29S1A0JD25 119 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 KRTAP13-3Q3SY46 172 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 BVES-AS1Q5T3Y7 98 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 HRCT1Q6UXD1 115 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 PRO1933Q9H354 126 aa11.43□□□□□ -0.58
FOXA1-203ENST00000553751 Q6ZQY7 126 aa11.42□□□□□ -0.58
FOXA1-203ENST00000553751 RAB37Q96AX2 223 aa11.42□□□□□ -0.58
FOXA1-203ENST00000553751 MUC17Q685J3 4493 aa11.42□□□□□ -0.58
FOXA1-203ENST00000553751 H7C2G1 150 aa11.41□□□□□ -0.58
FOXA1-203ENST00000553751 CEND1Q8N111 149 aa11.41□□□□□ -0.58
FOXA1-203ENST00000553751 CD164Q04900 197 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms