RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 BPY2O14599 106 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 C1orf43Q9BWL3 253 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 PRO0628Q9UI54 55 aa3.25□□□□□ -1.89
LIMA1-214ENST00000552783 SRRM2Q9UQ35 2752 aaKnown RBP3.24□□□□□ -1.89
LIMA1-214ENST00000552783 A0A0U1RQV1 116 aa3.24□□□□□ -1.89
LIMA1-214ENST00000552783 MPLKIPQ8TAP9 179 aa3.24□□□□□ -1.89
LIMA1-214ENST00000552783 COX17Q14061 63 aa3.24□□□□□ -1.89
LIMA1-214ENST00000552783 DEFB105AQ8NG35 78 aa3.24□□□□□ -1.89
LIMA1-214ENST00000552783 TENM3Q9P273 2699 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 MIFP14174 115 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 CXCL6P80162 114 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 NREPQ16612 68 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 FBN1P35555 2871 aaKnown RBP3.23□□□□□ -1.89
LIMA1-214ENST00000552783 LINC00612Q8N6U2 182 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 TMEM254Q8TBM7 123 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 C6orf48Q9UBA6 75 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 SMIM26A0A096LP01 95 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 LRCOL1A6NCL2 159 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 BRK1Q8WUW1 75 aa3.23□□□□□ -1.89
LIMA1-214ENST00000552783 KPRPQ5T749 579 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-214ENST00000552783 WFDC10BQ8IUB3 73 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 KRTAP17-1Q9BYP8 105 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 C3orf84H3BNL1 204 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 ZNF73O43830 326 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-214ENST00000552783 IGKV4-1P06312 121 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 Q6ZTC4 211 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 HIGD2AQ9BW72 106 aa3.22□□□□□ -1.89
LIMA1-214ENST00000552783 LELP1Q5T871 98 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 NKAPP1Q8N9T2 125 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 DIRC1Q969H9 104 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 OCR1Q9BZK8 76 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 A0A0J9YWU9 116 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 BCE1O60756 84 aa3.21□□□□□ -1.9
LIMA1-214ENST00000552783 ELOF1P60002 83 aaKnown RBP3.2□□□□□ -1.9
LIMA1-214ENST00000552783 DEFB131BA0A096LNP1 70 aa3.2□□□□□ -1.9
LIMA1-214ENST00000552783 COX7BP24311 80 aa3.2□□□□□ -1.9
LIMA1-214ENST00000552783 COL7A1Q02388 2944 aa3.2□□□□□ -1.9
LIMA1-214ENST00000552783 VPREB1P12018 145 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 Q8NAQ8 132 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 F8WDY8 70 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 C11orf45Q8TAV5 145 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 FAM30AQ9NZY2 134 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 LYSTQ99698 3801 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 PRYO14603 147 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 LINC00528Q8N1L1 170 aa3.19□□□□□ -1.9
LIMA1-214ENST00000552783 RPL37AP8A6NKH3 93 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 SMIM29Q86T20 159 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 PDE6GP18545 87 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 Q6ZRU5 148 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 PRR34Q9NV39 138 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 A0A0G2JQZ4 141 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 A0A1W2PNN7 141 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 J3QL48 77 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 KRTAP9-8Q9BYQ0 159 aa3.18□□□□□ -1.9
LIMA1-214ENST00000552783 DNAH10Q8IVF4 4471 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 IGKV2-24A0A0C4DH68 120 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 A8MU10 97 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 PSCAO43653 123 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 NDUFC1O43677 76 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 PRR4Q16378 134 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 FUSP35637 526 aaKnown RBP eCLIP3.17□□□□□ -1.9
LIMA1-214ENST00000552783 Q6ZRP5 223 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 Q8N377 158 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 UBE2BP63146 152 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 SYCNQ0VAF6 134 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 ESRGQ1W209 222 aa3.17□□□□□ -1.9
LIMA1-214ENST00000552783 GVQW2A0A096LPI5 108 aaPredicted RBP3.16□□□□□ -1.9
LIMA1-214ENST00000552783 SERTAD4-AS1Q5TG53 156 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 STAB2Q8WWQ8 2551 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 ETDCA0A1B0GVM5 59 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 A0A1W2PNM2 257 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 KRTAP26-1Q6PEX3 210 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 UBE2DNLQ8IWF7 75 aa3.16□□□□□ -1.9
LIMA1-214ENST00000552783 SEC61GP60059 68 aa3.15□□□□□ -1.9
LIMA1-214ENST00000552783 C15orf56Q8N910 161 aa3.15□□□□□ -1.9
LIMA1-214ENST00000552783 ST20-AS1Q8NBB2 130 aa3.15□□□□□ -1.9
LIMA1-214ENST00000552783 ERC2-IT1O76042 136 aa3.15□□□□□ -1.9
LIMA1-214ENST00000552783 C1orf64Q8NEQ6 169 aa3.15□□□□□ -1.9
LIMA1-214ENST00000552783 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.15□□□□□ -1.91
LIMA1-214ENST00000552783 hDV103S1A0JD37 113 aa3.15□□□□□ -1.91
LIMA1-214ENST00000552783 PSPHP1O15172 72 aa3.15□□□□□ -1.91
LIMA1-214ENST00000552783 C1orf195Q5TG92 126 aa3.15□□□□□ -1.91
LIMA1-214ENST00000552783 DNAH1Q9P2D7 4330 aa3.15□□□□□ -1.91
LIMA1-214ENST00000552783 FAM168BA1KXE4 195 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 M0R378 163 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 DEFB116Q30KQ4 102 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 K7EQZ3 153 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 ATP5EP56381 51 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-214ENST00000552783 DSCR10P59022 87 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 EGFEM1PQ0D2K5 195 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 Q9BRP9 147 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 KRTAP10-11P60412 298 aa3.14□□□□□ -1.91
LIMA1-214ENST00000552783 A0A096LNI7 61 aa3.13□□□□□ -1.91
LIMA1-214ENST00000552783 IGLV5-48A0A075B6I7 105 aa3.13□□□□□ -1.91
LIMA1-214ENST00000552783 KRTAP24-1Q3LI83 254 aa3.13□□□□□ -1.91
LIMA1-214ENST00000552783 C7orf33Q8WU49 177 aa3.13□□□□□ -1.91
LIMA1-214ENST00000552783 KRTAP7-1Q8IUC3 87 aa3.13□□□□□ -1.91
LIMA1-214ENST00000552783 ZCCHC13Q8WW36 166 aaKnown RBP3.13□□□□□ -1.91
LIMA1-214ENST00000552783 LCE6AA0A183 80 aa3.12□□□□□ -1.91
LIMA1-214ENST00000552783 LORP23490 312 aaPredicted RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms