RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 LINC00587B1AMM8 73 aa6.54□□□□□ -1.36
PTCH1-222ENST00000551425 TMEM238C9JI98 176 aa6.54□□□□□ -1.36
PTCH1-222ENST00000551425 RPS29P62273 56 aaKnown RBP6.54□□□□□ -1.36
PTCH1-222ENST00000551425 HERV-K104P63124 156 aa6.54□□□□□ -1.36
PTCH1-222ENST00000551425 Q8N377 158 aa6.54□□□□□ -1.36
PTCH1-222ENST00000551425 ZNF625Q96I27 306 aaPredicted RBP6.54□□□□□ -1.36
PTCH1-222ENST00000551425 M0R378 163 aa6.53□□□□□ -1.36
PTCH1-222ENST00000551425 TSPEAR-AS2P59090 65 aa6.53□□□□□ -1.36
PTCH1-222ENST00000551425 ANKRD39Q53RE8 183 aa6.53□□□□□ -1.36
PTCH1-222ENST00000551425 USH2AO75445 5202 aa6.53□□□□□ -1.36
PTCH1-222ENST00000551425 COX17Q14061 63 aa6.52□□□□□ -1.37
PTCH1-222ENST00000551425 PCOTHQ58A44 107 aa6.52□□□□□ -1.37
PTCH1-222ENST00000551425 HIGD2AQ9BW72 106 aa6.52□□□□□ -1.37
PTCH1-222ENST00000551425 MEIG1Q5JSS6 88 aa6.51□□□□□ -1.37
PTCH1-222ENST00000551425 ERG28Q9UKR5 140 aa6.51□□□□□ -1.37
PTCH1-222ENST00000551425 ZNF706Q9Y5V0 76 aaPredicted RBP6.51□□□□□ -1.37
PTCH1-222ENST00000551425 FCGBPQ9Y6R7 5405 aaPredicted RBP6.5□□□□□ -1.37
PTCH1-222ENST00000551425 ZNF815PA8K554 130 aa6.5□□□□□ -1.37
PTCH1-222ENST00000551425 SLC25A20O43772 301 aa6.5□□□□□ -1.37
PTCH1-222ENST00000551425 PFN2P35080 140 aa6.5□□□□□ -1.37
PTCH1-222ENST00000551425 PYY3Q5JQD4 70 aa6.5□□□□□ -1.37
PTCH1-222ENST00000551425 LINC00158P58513 81 aa6.49□□□□□ -1.37
PTCH1-222ENST00000551425 VAMP8Q9BV40 100 aa6.49□□□□□ -1.37
PTCH1-222ENST00000551425 FLGP20930 4061 aaPredicted RBP6.49□□□□□ -1.37
PTCH1-222ENST00000551425 A0A0J9YXY3 114 aa6.48□□□□□ -1.37
PTCH1-222ENST00000551425 SMIM13P0DJ93 91 aa6.48□□□□□ -1.37
PTCH1-222ENST00000551425 VPREB1P12018 145 aa6.48□□□□□ -1.37
PTCH1-222ENST00000551425 PAM16Q9Y3D7 125 aa6.48□□□□□ -1.37
PTCH1-222ENST00000551425 A0A0U1RRA0 63 aa6.47□□□□□ -1.37
PTCH1-222ENST00000551425 SPATA45Q537H7 98 aa6.47□□□□□ -1.37
PTCH1-222ENST00000551425 SCGB1D4Q6XE38 83 aa6.47□□□□□ -1.37
PTCH1-222ENST00000551425 PCP2Q8IVA1 136 aa6.47□□□□□ -1.37
PTCH1-222ENST00000551425 TTTY13Q9BZ97 58 aa6.47□□□□□ -1.37
PTCH1-222ENST00000551425 LOC105371267A0A1B0GV96 52 aa6.46□□□□□ -1.38
PTCH1-222ENST00000551425 TIMM17BO60830 172 aa6.46□□□□□ -1.38
PTCH1-222ENST00000551425 S100A12P80511 92 aa6.46□□□□□ -1.38
PTCH1-222ENST00000551425 COX8AP10176 69 aa6.45□□□□□ -1.38
PTCH1-222ENST00000551425 MIR7-3HGQ8N6C7 128 aa6.45□□□□□ -1.38
PTCH1-222ENST00000551425 RPL24P83731 157 aaKnown RBP6.44□□□□□ -1.38
PTCH1-222ENST00000551425 LINC00483Q53H64 154 aa6.44□□□□□ -1.38
PTCH1-222ENST00000551425 COX6B2Q6YFQ2 88 aa6.44□□□□□ -1.38
PTCH1-222ENST00000551425 SND1-IT1Q9HBX3 110 aa6.44□□□□□ -1.38
PTCH1-222ENST00000551425 DLEU1O43261 78 aa6.43□□□□□ -1.38
PTCH1-222ENST00000551425 SMIM6P0DI80 62 aa6.43□□□□□ -1.38
PTCH1-222ENST00000551425 SSBP3-AS1Q7Z2R9 100 aa6.43□□□□□ -1.38
PTCH1-222ENST00000551425 BOD1L2Q8IYS8 172 aa6.43□□□□□ -1.38
PTCH1-222ENST00000551425 C14orf144Q96I85 54 aa6.43□□□□□ -1.38
PTCH1-222ENST00000551425 MOBPQ13875 183 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 ADAMTSL4-AS1Q5T5F5 129 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 SLC25A34Q6PIV7 304 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 Q6ZVH6 145 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 LITAFQ99732 161 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 MIEN1Q9BRT3 115 aa6.42□□□□□ -1.38
PTCH1-222ENST00000551425 LOC107984156A0A0G2JMH3 177 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 ARL17AQ8IVW1 177 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 Q8NDZ9 215 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 COPS9Q8WXC6 57 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 SPANXDQ9BXN6 97 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 SPANXCQ9NY87 97 aa6.41□□□□□ -1.38
PTCH1-222ENST00000551425 KRTAP4-16G5E9R7 235 aaPredicted RBP6.4□□□□□ -1.38
PTCH1-222ENST00000551425 SMCR5Q8TEV8 140 aa6.4□□□□□ -1.38
PTCH1-222ENST00000551425 CFC1P0CG37 223 aa6.39□□□□□ -1.39
PTCH1-222ENST00000551425 IFITM1P13164 125 aa6.39□□□□□ -1.39
PTCH1-222ENST00000551425 LINC00308Q8TCZ7 52 aa6.39□□□□□ -1.39
PTCH1-222ENST00000551425 SPANXB1Q9NS25 103 aaPredicted RBP6.39□□□□□ -1.39
PTCH1-222ENST00000551425 IGLV9-49A0A0B4J1Y8 123 aa6.38□□□□□ -1.39
PTCH1-222ENST00000551425 NPC2P61916 151 aa6.38□□□□□ -1.39
PTCH1-222ENST00000551425 HIGD1BQ9P298 99 aa6.38□□□□□ -1.39
PTCH1-222ENST00000551425 NDUFC2O95298 119 aa6.37□□□□□ -1.39
PTCH1-222ENST00000551425 GAGE2AQ6NT46 116 aa6.37□□□□□ -1.39
PTCH1-222ENST00000551425 SOSTDC1Q6X4U4 206 aa6.37□□□□□ -1.39
PTCH1-222ENST00000551425 UQCR10Q9UDW1 63 aa6.37□□□□□ -1.39
PTCH1-222ENST00000551425 C9orf92A6NGG3 77 aa6.36□□□□□ -1.39
PTCH1-222ENST00000551425 SPRR1AP35321 89 aa6.36□□□□□ -1.39
PTCH1-222ENST00000551425 MUSTN1Q8IVN3 82 aa6.36□□□□□ -1.39
PTCH1-222ENST00000551425 HIST1H4GQ99525 98 aa6.36□□□□□ -1.39
PTCH1-222ENST00000551425 C12orf57Q99622 126 aa6.36□□□□□ -1.39
PTCH1-222ENST00000551425 TRBV10-2A0A0K0K1G8 114 aa6.35□□□□□ -1.39
PTCH1-222ENST00000551425 PRYO14603 147 aa6.35□□□□□ -1.39
PTCH1-222ENST00000551425 KRTAP19-1Q8IUB9 90 aa6.35□□□□□ -1.39
PTCH1-222ENST00000551425 EIF4EBP3O60516 100 aaPredicted RBP6.34□□□□□ -1.39
PTCH1-222ENST00000551425 C2orf91Q6ZV80 131 aa6.34□□□□□ -1.39
PTCH1-222ENST00000551425 LINC00518Q8N0U6 118 aa6.34□□□□□ -1.39
PTCH1-222ENST00000551425 SYNE2Q8WXH0 6885 aaKnown RBP6.34□□□□□ -1.39
PTCH1-222ENST00000551425 NCR3O14931 201 aa6.33□□□□□ -1.4
PTCH1-222ENST00000551425 TAL2Q16559 108 aa6.33□□□□□ -1.4
PTCH1-222ENST00000551425 KRTAP9-8Q9BYQ0 159 aa6.33□□□□□ -1.4
PTCH1-222ENST00000551425 PRO1933Q9H354 126 aa6.33□□□□□ -1.4
PTCH1-222ENST00000551425 S100A7L2Q5SY68 101 aa6.32□□□□□ -1.4
PTCH1-222ENST00000551425 KCNQ1DNQ9H478 68 aa6.32□□□□□ -1.4
PTCH1-222ENST00000551425 MACF1Q9UPN3 7388 aaKnown RBP6.32□□□□□ -1.4
PTCH1-222ENST00000551425 ETDCA0A1B0GVM5 59 aa6.31□□□□□ -1.4
PTCH1-222ENST00000551425 TSTD3H0UI37 97 aa6.31□□□□□ -1.4
PTCH1-222ENST00000551425 CBY1Q9Y3M2 126 aa6.31□□□□□ -1.4
PTCH1-222ENST00000551425 A4D1N5 150 aa6.3□□□□□ -1.4
PTCH1-222ENST00000551425 ERC2-IT1O76042 136 aa6.3□□□□□ -1.4
PTCH1-222ENST00000551425 IGLV6-57P01721 117 aa6.3□□□□□ -1.4
PTCH1-222ENST00000551425 DDTP30046 118 aa6.3□□□□□ -1.4
PTCH1-222ENST00000551425 HSD52Q0P140 79 aa6.3□□□□□ -1.4
PTCH1-222ENST00000551425 CEND1Q8N111 149 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms