RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 FAM19A1Q7Z5A9 133 aa12.94□□□□□ -0.34
VPS29-206ENST00000549578 FXYD2P54710 66 aa12.93□□□□□ -0.34
VPS29-206ENST00000549578 UBE2AP49459 152 aa12.93□□□□□ -0.34
VPS29-206ENST00000549578 PRLHP81277 87 aa12.93□□□□□ -0.34
VPS29-206ENST00000549578 KRTAP4-16G5E9R7 235 aaPredicted RBP12.91□□□□□ -0.34
VPS29-206ENST00000549578 ZNF73O43830 326 aaPredicted RBP12.91□□□□□ -0.34
VPS29-206ENST00000549578 CFC1BP0CG36 223 aa12.91□□□□□ -0.34
VPS29-206ENST00000549578 CFC1P0CG37 223 aa12.91□□□□□ -0.34
VPS29-206ENST00000549578 PKHD1L1Q86WI1 4243 aa12.91□□□□□ -0.34
VPS29-206ENST00000549578 ETDCA0A1B0GVM5 59 aa12.9□□□□□ -0.34
VPS29-206ENST00000549578 ZNF861PO60384 105 aa12.9□□□□□ -0.34
VPS29-206ENST00000549578 INAFM2P0DMQ5 153 aa12.9□□□□□ -0.34
VPS29-206ENST00000549578 KRTAP13-1Q8IUC0 172 aa12.9□□□□□ -0.34
VPS29-206ENST00000549578 TMEM238LA0A1B0GVL6 79 aa12.89□□□□□ -0.35
VPS29-206ENST00000549578 A6NJY4 79 aa12.89□□□□□ -0.35
VPS29-206ENST00000549578 RPL28P46779 137 aaKnown RBP12.89□□□□□ -0.35
VPS29-206ENST00000549578 CBY1Q9Y3M2 126 aa12.89□□□□□ -0.35
VPS29-206ENST00000549578 SPINK6Q6UWN8 80 aa12.88□□□□□ -0.35
VPS29-206ENST00000549578 RPL13AP40429 203 aaKnown RBP12.88□□□□□ -0.35
VPS29-206ENST00000549578 CTAG1AP78358 180 aa12.88□□□□□ -0.35
VPS29-206ENST00000549578 RAB37Q96AX2 223 aa12.87□□□□□ -0.35
VPS29-206ENST00000549578 A0A0B4J2C4 111 aa12.86□□□□□ -0.35
VPS29-206ENST00000549578 B5MCH6 92 aa12.86□□□□□ -0.35
VPS29-206ENST00000549578 C6orf99Q4VX62 202 aa12.86□□□□□ -0.35
VPS29-206ENST00000549578 DIRC1Q969H9 104 aa12.86□□□□□ -0.35
VPS29-206ENST00000549578 FLG2Q5D862 2391 aaPredicted RBP12.85□□□□□ -0.35
VPS29-206ENST00000549578 SMIM11BQ8TCY0 68 aa12.85□□□□□ -0.35
VPS29-206ENST00000549578 NHP2Q9NX24 153 aaKnown RBP12.84□□□□□ -0.35
VPS29-206ENST00000549578 BVES-AS1Q5T3Y7 98 aa12.83□□□□□ -0.35
VPS29-206ENST00000549578 H0Y9J4 135 aa12.83□□□□□ -0.36
VPS29-206ENST00000549578 H7C2G1 150 aa12.83□□□□□ -0.36
VPS29-206ENST00000549578 Q6ZRX8 168 aa12.83□□□□□ -0.36
VPS29-206ENST00000549578 HIGD2AQ9BW72 106 aa12.83□□□□□ -0.36
VPS29-206ENST00000549578 HINT1P49773 126 aaPredicted RBP12.82□□□□□ -0.36
VPS29-206ENST00000549578 K7ERJ3 54 aa12.81□□□□□ -0.36
VPS29-206ENST00000549578 PCLOQ9Y6V0 5065 aa12.81□□□□□ -0.36
VPS29-206ENST00000549578 PRO1854Q9UHT4 67 aa12.8□□□□□ -0.36
VPS29-206ENST00000549578 Q9BRP9 147 aa12.79□□□□□ -0.36
VPS29-206ENST00000549578 MYCBP2O75592 4640 aa12.79□□□□□ -0.36
VPS29-206ENST00000549578 COX7BP24311 80 aa12.78□□□□□ -0.36
VPS29-206ENST00000549578 SMCR5Q8TEV8 140 aa12.78□□□□□ -0.36
VPS29-206ENST00000549578 M0R143 59 aa12.78□□□□□ -0.36
VPS29-206ENST00000549578 ELOF1P60002 83 aaKnown RBP12.78□□□□□ -0.36
VPS29-206ENST00000549578 A0A1B0GWB2 263 aa12.77□□□□□ -0.37
VPS29-206ENST00000549578 TRBV7-6A0A0J9YX20 115 aa12.75□□□□□ -0.37
VPS29-206ENST00000549578 Q1RN00 199 aa12.75□□□□□ -0.37
VPS29-206ENST00000549578 LRP1Q07954 4544 aaKnown RBP12.74□□□□□ -0.37
VPS29-206ENST00000549578 ERC2-IT1O76042 136 aa12.74□□□□□ -0.37
VPS29-206ENST00000549578 FAT3Q8TDW7 4589 aa12.71□□□□□ -0.37
VPS29-206ENST00000549578 KRTAP1-4P0C5Y4 121 aa12.71□□□□□ -0.38
VPS29-206ENST00000549578 VAMP3Q15836 100 aa12.71□□□□□ -0.38
VPS29-206ENST00000549578 BATFQ16520 125 aa12.69□□□□□ -0.38
VPS29-206ENST00000549578 DHRS4-AS1Q9P1J3 65 aa12.69□□□□□ -0.38
VPS29-206ENST00000549578 TSPAN13O95857 204 aa12.67□□□□□ -0.38
VPS29-206ENST00000549578 ANAPC11Q9NYG5 84 aa12.67□□□□□ -0.38
VPS29-206ENST00000549578 SPRR4Q96PI1 79 aa12.67□□□□□ -0.38
VPS29-206ENST00000549578 TRIAP1O43715 76 aa12.65□□□□□ -0.38
VPS29-206ENST00000549578 ST20-AS1Q8NBB2 130 aa12.65□□□□□ -0.38
VPS29-206ENST00000549578 OXTP01178 125 aa12.64□□□□□ -0.39
VPS29-206ENST00000549578 LINC00575Q6W349 94 aa12.64□□□□□ -0.39
VPS29-206ENST00000549578 LINC01600Q96MT4 127 aa12.64□□□□□ -0.39
VPS29-206ENST00000549578 ZNF706Q9Y5V0 76 aaPredicted RBP12.64□□□□□ -0.39
VPS29-206ENST00000549578 PCP4L1A6NKN8 68 aa12.62□□□□□ -0.39
VPS29-206ENST00000549578 KRTAP29-1A8MX34 341 aaPredicted RBP12.62□□□□□ -0.39
VPS29-206ENST00000549578 PSMB2P49721 201 aa12.62□□□□□ -0.39
VPS29-206ENST00000549578 GAGE2AQ6NT46 116 aa12.62□□□□□ -0.39
VPS29-206ENST00000549578 PRR26Q8N8Z3 221 aa12.62□□□□□ -0.39
VPS29-206ENST00000549578 SLC25A20O43772 301 aa12.61□□□□□ -0.39
VPS29-206ENST00000549578 A0A087X002 238 aa12.6□□□□□ -0.39
VPS29-206ENST00000549578 H0YGX0 51 aa12.59□□□□□ -0.39
VPS29-206ENST00000549578 hADV29S1A0JD25 119 aa12.58□□□□□ -0.4
VPS29-206ENST00000549578 FAM218AQ96MZ4 157 aa12.58□□□□□ -0.4
VPS29-206ENST00000549578 MT1HL1P0DM35 61 aa12.57□□□□□ -0.4
VPS29-206ENST00000549578 FAM229BQ4G0N7 80 aa12.57□□□□□ -0.4
VPS29-206ENST00000549578 LINC00483Q53H64 154 aa12.57□□□□□ -0.4
VPS29-206ENST00000549578 NAA38Q9BRA0 125 aaKnown RBP12.57□□□□□ -0.4
VPS29-206ENST00000549578 SNHG12Q9BXW3 62 aa12.57□□□□□ -0.4
VPS29-206ENST00000549578 CRYGAP11844 174 aa12.56□□□□□ -0.4
VPS29-206ENST00000549578 DEFB105AQ8NG35 78 aa12.56□□□□□ -0.4
VPS29-206ENST00000549578 CLEC2BQ92478 149 aa12.56□□□□□ -0.4
VPS29-206ENST00000549578 COX6CP09669 75 aa12.55□□□□□ -0.4
VPS29-206ENST00000549578 J3QL48 77 aa12.54□□□□□ -0.4
VPS29-206ENST00000549578 KRTAP10-8P60410 259 aa12.54□□□□□ -0.4
VPS29-206ENST00000549578 TNXBP22105 4242 aa12.54□□□□□ -0.4
VPS29-206ENST00000549578 KRTAP13-2Q52LG2 175 aa12.53□□□□□ -0.4
VPS29-206ENST00000549578 Q6ZQY7 126 aa12.53□□□□□ -0.4
VPS29-206ENST00000549578 SCGB1C2P0DMR2 95 aa12.52□□□□□ -0.41
VPS29-206ENST00000549578 LINC01547P58512 204 aaPredicted RBP12.52□□□□□ -0.41
VPS29-206ENST00000549578 SPRR1BP22528 89 aa12.51□□□□□ -0.41
VPS29-206ENST00000549578 C3orf22Q8N5N4 141 aa12.51□□□□□ -0.41
VPS29-206ENST00000549578 IGLV5-48A0A075B6I7 105 aa12.5□□□□□ -0.41
VPS29-206ENST00000549578 TEX49A0A1B0GTD5 131 aa12.49□□□□□ -0.41
VPS29-206ENST00000549578 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.49□□□□□ -0.41
VPS29-206ENST00000549578 DMBT1Q9UGM3 2413 aaPredicted RBP12.49□□□□□ -0.41
VPS29-206ENST00000549578 TAX1BP3O14907 124 aa12.48□□□□□ -0.41
VPS29-206ENST00000549578 SNCGO76070 127 aa12.48□□□□□ -0.41
VPS29-206ENST00000549578 A0A1B0GX51 115 aa12.47□□□□□ -0.41
VPS29-206ENST00000549578 Q8N377 158 aa12.47□□□□□ -0.41
VPS29-206ENST00000549578 TYMSOSQ8TAI1 123 aa12.47□□□□□ -0.41
VPS29-206ENST00000549578 IGLV9-49A0A0B4J1Y8 123 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms