RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 IGKV2-28A0A075B6P5 120 aa7.44□□□□□ -1.22
PTCH1-218ENST00000548945 IGKV2D-28P01615 120 aa7.44□□□□□ -1.22
PTCH1-218ENST00000548945 Q6ZVH6 145 aa7.44□□□□□ -1.22
PTCH1-218ENST00000548945 RETNLBQ9BQ08 111 aa7.44□□□□□ -1.22
PTCH1-218ENST00000548945 CDIP1Q9H305 208 aa7.44□□□□□ -1.22
PTCH1-218ENST00000548945 LITAFQ99732 161 aa7.43□□□□□ -1.22
PTCH1-218ENST00000548945 SPANXDQ9BXN6 97 aa7.43□□□□□ -1.22
PTCH1-218ENST00000548945 SPANXCQ9NY87 97 aa7.43□□□□□ -1.22
PTCH1-218ENST00000548945 MUC17Q685J3 4493 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 IGLV7-46A0A075B6I9 117 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 VPREB1P12018 145 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 RPL24P83731 157 aaKnown RBP7.42□□□□□ -1.22
PTCH1-218ENST00000548945 COX17Q14061 63 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 TMEM126AQ9H061 195 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 ERG28Q9UKR5 140 aa7.42□□□□□ -1.22
PTCH1-218ENST00000548945 SMIM13P0DJ93 91 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 PFN2P35080 140 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 HINT1P49773 126 aaPredicted RBP7.41□□□□□ -1.22
PTCH1-218ENST00000548945 PRLHP81277 87 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 BVES-AS1Q5T3Y7 98 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 FAM19A1Q7Z5A9 133 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 CEND1Q8N111 149 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 COPS9Q8WXC6 57 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 SND1-IT1Q9HBX3 110 aa7.41□□□□□ -1.22
PTCH1-218ENST00000548945 IFITM1P13164 125 aa7.4□□□□□ -1.22
PTCH1-218ENST00000548945 TMEM238LA0A1B0GVL6 79 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 A6NJY4 79 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 M0R378 163 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 LINC00158P58513 81 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 BATFQ16520 125 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 ADAMTSL4-AS1Q5T5F5 129 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 SNHG12Q9BXW3 62 aa7.39□□□□□ -1.23
PTCH1-218ENST00000548945 A0A0U1RRA0 63 aa7.38□□□□□ -1.23
PTCH1-218ENST00000548945 SPAG11AQ6PDA7 123 aa7.38□□□□□ -1.23
PTCH1-218ENST00000548945 MIR7-3HGQ8N6C7 128 aa7.38□□□□□ -1.23
PTCH1-218ENST00000548945 PPDPFQ9H3Y8 114 aa7.38□□□□□ -1.23
PTCH1-218ENST00000548945 A6NDN8 102 aa7.37□□□□□ -1.23
PTCH1-218ENST00000548945 FXYD2P54710 66 aa7.37□□□□□ -1.23
PTCH1-218ENST00000548945 MUSTN1Q8IVN3 82 aa7.37□□□□□ -1.23
PTCH1-218ENST00000548945 DAND5Q8N907 189 aa7.37□□□□□ -1.23
PTCH1-218ENST00000548945 FP248Q71RG6 208 aaPredicted RBP7.36□□□□□ -1.23
PTCH1-218ENST00000548945 C3orf22Q8N5N4 141 aa7.36□□□□□ -1.23
PTCH1-218ENST00000548945 LINC00308Q8TCZ7 52 aa7.36□□□□□ -1.23
PTCH1-218ENST00000548945 NPC2P61916 151 aa7.35□□□□□ -1.23
PTCH1-218ENST00000548945 Q8NDZ9 215 aa7.35□□□□□ -1.23
PTCH1-218ENST00000548945 COL5A1-AS1Q5SY13 56 aa7.34□□□□□ -1.23
PTCH1-218ENST00000548945 SPRR4Q96PI1 79 aa7.34□□□□□ -1.23
PTCH1-218ENST00000548945 HIGD2AQ9BW72 106 aa7.34□□□□□ -1.23
PTCH1-218ENST00000548945 ZNF706Q9Y5V0 76 aaPredicted RBP7.34□□□□□ -1.23
PTCH1-218ENST00000548945 KRTAP9-6A0A140TA67 174 aa7.33□□□□□ -1.24
PTCH1-218ENST00000548945 A4D1N5 150 aa7.33□□□□□ -1.24
PTCH1-218ENST00000548945 SOSTDC1Q6X4U4 206 aa7.33□□□□□ -1.24
PTCH1-218ENST00000548945 NHP2Q9NX24 153 aaKnown RBP7.33□□□□□ -1.24
PTCH1-218ENST00000548945 LOC107984156A0A0G2JMH3 177 aa7.32□□□□□ -1.24
PTCH1-218ENST00000548945 A0A1B0GWB2 263 aa7.32□□□□□ -1.24
PTCH1-218ENST00000548945 C4orf48Q5BLP8 95 aa7.32□□□□□ -1.24
PTCH1-218ENST00000548945 ARL17AQ8IVW1 177 aa7.32□□□□□ -1.24
PTCH1-218ENST00000548945 A0A0B4J2C4 111 aa7.31□□□□□ -1.24
PTCH1-218ENST00000548945 EIF4EBP3O60516 100 aaPredicted RBP7.31□□□□□ -1.24
PTCH1-218ENST00000548945 PRYO14603 147 aa7.3□□□□□ -1.24
PTCH1-218ENST00000548945 RAB37Q96AX2 223 aa7.3□□□□□ -1.24
PTCH1-218ENST00000548945 K7ERJ3 54 aa7.29□□□□□ -1.24
PTCH1-218ENST00000548945 CFC1BP0CG36 223 aa7.29□□□□□ -1.24
PTCH1-218ENST00000548945 CFC1P0CG37 223 aa7.29□□□□□ -1.24
PTCH1-218ENST00000548945 KRTAP13-3Q3SY46 172 aa7.29□□□□□ -1.24
PTCH1-218ENST00000548945 LINC00337Q8N6G1 96 aa7.29□□□□□ -1.24
PTCH1-218ENST00000548945 NDUFC2O95298 119 aa7.28□□□□□ -1.24
PTCH1-218ENST00000548945 SPINK1P00995 79 aa7.28□□□□□ -1.24
PTCH1-218ENST00000548945 SPRR1AP35321 89 aa7.28□□□□□ -1.24
PTCH1-218ENST00000548945 ASB16-AS1Q495Z4 193 aa7.28□□□□□ -1.24
PTCH1-218ENST00000548945 Q8NBF4 154 aa7.28□□□□□ -1.24
PTCH1-218ENST00000548945 TAX1BP3O14907 124 aa7.27□□□□□ -1.25
PTCH1-218ENST00000548945 KCNQ1DNQ9H478 68 aa7.27□□□□□ -1.25
PTCH1-218ENST00000548945 PRO1854Q9UHT4 67 aa7.27□□□□□ -1.25
PTCH1-218ENST00000548945 TRAV13-2A0A0B4J235 113 aa7.26□□□□□ -1.25
PTCH1-218ENST00000548945 KRTAP4-16G5E9R7 235 aaPredicted RBP7.25□□□□□ -1.25
PTCH1-218ENST00000548945 LINC00483Q53H64 154 aa7.25□□□□□ -1.25
PTCH1-218ENST00000548945 ETDCA0A1B0GVM5 59 aa7.24□□□□□ -1.25
PTCH1-218ENST00000548945 C9orf118A6NHY6 69 aa7.24□□□□□ -1.25
PTCH1-218ENST00000548945 RPS29P62273 56 aaKnown RBP7.24□□□□□ -1.25
PTCH1-218ENST00000548945 LCE2DQ5TA82 110 aaPredicted RBP7.24□□□□□ -1.25
PTCH1-218ENST00000548945 SMCR5Q8TEV8 140 aa7.24□□□□□ -1.25
PTCH1-218ENST00000548945 TRBV10-2A0A0K0K1G8 114 aa7.23□□□□□ -1.25
PTCH1-218ENST00000548945 LINC01547P58512 204 aaPredicted RBP7.23□□□□□ -1.25
PTCH1-218ENST00000548945 SEC61BP60468 96 aaKnown RBP7.23□□□□□ -1.25
PTCH1-218ENST00000548945 Q1RN00 199 aa7.22□□□□□ -1.25
PTCH1-218ENST00000548945 TRBV10-3A0A0K0K1G6 114 aa7.21□□□□□ -1.26
PTCH1-218ENST00000548945 H3BUT2 72 aa7.21□□□□□ -1.26
PTCH1-218ENST00000548945 H7C2G1 150 aa7.21□□□□□ -1.26
PTCH1-218ENST00000548945 NCR3O14931 201 aa7.21□□□□□ -1.26
PTCH1-218ENST00000548945 SSBP3-AS1Q7Z2R9 100 aa7.21□□□□□ -1.26
PTCH1-218ENST00000548945 OR13C6PQ8NH95 151 aa7.2□□□□□ -1.26
PTCH1-218ENST00000548945 B5MCH6 92 aa7.19□□□□□ -1.26
PTCH1-218ENST00000548945 S100A7L2Q5SY68 101 aa7.19□□□□□ -1.26
PTCH1-218ENST00000548945 LYRM7Q5U5X0 104 aa7.19□□□□□ -1.26
PTCH1-218ENST00000548945 GAGE2AQ6NT46 116 aa7.19□□□□□ -1.26
PTCH1-218ENST00000548945 Q8N377 158 aa7.19□□□□□ -1.26
PTCH1-218ENST00000548945 A0A1W2PPM0 123 aa7.18□□□□□ -1.26
PTCH1-218ENST00000548945 SLC25A20O43772 301 aa7.18□□□□□ -1.26
PTCH1-218ENST00000548945 FABP2P12104 132 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms