RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 H0Y9P7 68 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 CMC4P56277 68 aaPredicted RBP3.7□□□□□ -1.82
XRCC4-206ENST00000542685 LY6EQ16553 131 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 Q8N9L7 120 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 C4orf3Q8WVX3 66 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 SPRR4Q96PI1 79 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 ABCA2Q9BZC7 2435 aa3.7□□□□□ -1.82
XRCC4-206ENST00000542685 TNRC18O15417 2968 aaPredicted RBP3.69□□□□□ -1.82
XRCC4-206ENST00000542685 GVQW2A0A096LPI5 108 aaPredicted RBP3.69□□□□□ -1.82
XRCC4-206ENST00000542685 LINC00959A0A1B0GUT2 108 aa3.69□□□□□ -1.82
XRCC4-206ENST00000542685 Q8NAQ8 132 aa3.69□□□□□ -1.82
XRCC4-206ENST00000542685 C16orf74Q96GX8 76 aa3.69□□□□□ -1.82
XRCC4-206ENST00000542685 ZNF702PQ9H963 129 aa3.69□□□□□ -1.82
XRCC4-206ENST00000542685 TRGV4A0A0C4DH28 118 aa3.68□□□□□ -1.82
XRCC4-206ENST00000542685 KPRPQ5T749 579 aaPredicted RBP3.68□□□□□ -1.82
XRCC4-206ENST00000542685 ST20-AS1Q8NBB2 130 aa3.68□□□□□ -1.82
XRCC4-206ENST00000542685 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
XRCC4-206ENST00000542685 ZFHX3Q15911 3703 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 DCHS1Q96JQ0 3298 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 IGKV2D-24A0A075B6R9 120 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 IGLV1-51P01701 117 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 CCL19Q99731 98 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 ZNF706Q9Y5V0 76 aaPredicted RBP3.67□□□□□ -1.82
XRCC4-206ENST00000542685 PCNX1Q96RV3 2341 aa3.67□□□□□ -1.82
XRCC4-206ENST00000542685 MED13LQ71F56 2210 aa3.66□□□□□ -1.82
XRCC4-206ENST00000542685 CNOT1A5YKK6 2376 aaKnown RBP3.66□□□□□ -1.82
XRCC4-206ENST00000542685 PRR4Q16378 134 aa3.66□□□□□ -1.82
XRCC4-206ENST00000542685 DEFB112Q30KQ8 113 aa3.66□□□□□ -1.82
XRCC4-206ENST00000542685 KLK12Q9UKR0 248 aa3.66□□□□□ -1.82
XRCC4-206ENST00000542685 DSPP15924 2871 aaKnown RBP3.66□□□□□ -1.82
XRCC4-206ENST00000542685 LOC400499M0QZD8 3231 aa3.66□□□□□ -1.82
XRCC4-206ENST00000542685 BSNQ9UPA5 3926 aa3.65□□□□□ -1.82
XRCC4-206ENST00000542685 NCOR1O75376 2440 aa3.65□□□□□ -1.82
XRCC4-206ENST00000542685 DEFB131BA0A096LNP1 70 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 TRGV1A0A0A0MS02 117 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 A0A1W2PNM2 257 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 SPINK7P58062 85 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 SPAG11AQ6PDA7 123 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 WDFY4Q6ZS81 3184 aa3.65□□□□□ -1.83
XRCC4-206ENST00000542685 CEP250Q9BV73 2442 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 K7EQZ3 153 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 HTN1P15515 57 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 SPATA8Q6RVD6 105 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 C10orf99Q6UWK7 81 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 PIEZO2Q9H5I5 2752 aa3.64□□□□□ -1.83
XRCC4-206ENST00000542685 EP300Q09472 2414 aaPredicted RBP3.64□□□□□ -1.83
XRCC4-206ENST00000542685 ATRXP46100 2492 aa3.63□□□□□ -1.83
XRCC4-206ENST00000542685 ACACAQ13085 2346 aa3.63□□□□□ -1.83
XRCC4-206ENST00000542685 TP53AIP1Q9HCN2 124 aa3.63□□□□□ -1.83
XRCC4-206ENST00000542685 DHRS4-AS1Q9P1J3 65 aa3.63□□□□□ -1.83
XRCC4-206ENST00000542685 TPRP12270 2363 aaKnown RBP3.62□□□□□ -1.83
XRCC4-206ENST00000542685 KRTAP10-8P60410 259 aa3.62□□□□□ -1.83
XRCC4-206ENST00000542685 CSNK1G2-AS1Q8NCQ2 148 aa3.62□□□□□ -1.83
XRCC4-206ENST00000542685 KALRNO60229 2985 aa3.62□□□□□ -1.83
XRCC4-206ENST00000542685 DMDP11532 3685 aa3.62□□□□□ -1.83
XRCC4-206ENST00000542685 PRB1P04280 392 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 ROMO1P60602 79 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 C1orf137Q5JT78 98 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 TYMSOSQ8TAI1 123 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 DMXL2Q8TDJ6 3036 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 CR1P17927 2039 aa3.61□□□□□ -1.83
XRCC4-206ENST00000542685 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.6□□□□□ -1.835e-6■■■■□ 22.8
XRCC4-206ENST00000542685 ZFHX4Q86UP3 3567 aa3.6□□□□□ -1.83
XRCC4-206ENST00000542685 GIG44P09565 113 aaPredicted RBP3.6□□□□□ -1.83
XRCC4-206ENST00000542685 C1orf134Q5TEV5 83 aa3.6□□□□□ -1.83
XRCC4-206ENST00000542685 NOP10Q9NPE3 64 aaKnown RBP3.6□□□□□ -1.83
XRCC4-206ENST00000542685 NOTCH2Q04721 2471 aa3.6□□□□□ -1.83
XRCC4-206ENST00000542685 CACNA1HO95180 2353 aa3.59□□□□□ -1.83
XRCC4-206ENST00000542685 Q8NDZ9 215 aa3.59□□□□□ -1.83
XRCC4-206ENST00000542685 ADGRG4Q8IZF6 3080 aa3.59□□□□□ -1.84
XRCC4-206ENST00000542685 SPTBN1Q01082 2364 aaKnown RBP3.59□□□□□ -1.84
XRCC4-206ENST00000542685 HRNRQ86YZ3 2850 aaPredicted RBP3.58□□□□□ -1.84
XRCC4-206ENST00000542685 IGKV3OR2-268A0A0C4DH90 116 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 RPL37AP8A6NKH3 93 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 DEFB136Q30KP8 78 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 CSAG1Q6PB30 78 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 PRO0255Q9UI72 69 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 SMG1Q96Q15 3661 aaKnown RBP3.58□□□□□ -1.84
XRCC4-206ENST00000542685 COL6A6A6NMZ7 2263 aa3.58□□□□□ -1.84
XRCC4-206ENST00000542685 IGLV1-50A0A075B6I6 118 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 A8MWP4 228 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 UQCR11O14957 56 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 REG3GQ6UW15 175 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 ADM2Q7Z4H4 148 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 RP1L1Q8IWN7 2480 aaPredicted RBP3.57□□□□□ -1.84
XRCC4-206ENST00000542685 SORL1Q92673 2214 aa3.57□□□□□ -1.84
XRCC4-206ENST00000542685 IGLV8-61A0A075B6I0 122 aa3.56□□□□□ -1.84
XRCC4-206ENST00000542685 PRB2P02812 416 aaPredicted RBP3.56□□□□□ -1.84
XRCC4-206ENST00000542685 EGFEM1PQ0D2K5 195 aa3.56□□□□□ -1.84
XRCC4-206ENST00000542685 KRTAP11-1Q8IUC1 163 aa3.56□□□□□ -1.84
XRCC4-206ENST00000542685 CHCHD10Q8WYQ3 142 aaPredicted RBP3.56□□□□□ -1.84
XRCC4-206ENST00000542685 MAP1BP46821 2468 aaKnown RBP3.55□□□□□ -1.84
XRCC4-206ENST00000542685 ANKRD11Q6UB99 2663 aaPredicted RBP3.55□□□□□ -1.84
XRCC4-206ENST00000542685 A0A087WSZ3 146 aa3.55□□□□□ -1.84
XRCC4-206ENST00000542685 HRES1P13985 223 aa3.55□□□□□ -1.84
XRCC4-206ENST00000542685 REG3AQ06141 175 aa3.55□□□□□ -1.84
XRCC4-206ENST00000542685 WFDC13Q8IUB5 93 aa3.55□□□□□ -1.84
XRCC4-206ENST00000542685 PTPRZ1P23471 2315 aaPredicted RBP3.55□□□□□ -1.84
XRCC4-206ENST00000542685 MIR22HGQ0VDD5 57 aa3.54□□□□□ -1.84
XRCC4-206ENST00000542685 HIVEP3Q5T1R4 2406 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms