RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 C6orf48Q9UBA6 75 aa8.63□□□□□ -1.03
SFSWAP-209ENST00000540469 ELOF1P60002 83 aaKnown RBP8.62□□□□□ -1.03
SFSWAP-209ENST00000540469 IGKV4-1P06312 121 aa8.61□□□□□ -1.03
SFSWAP-209ENST00000540469 X6R8D5 127 aa8.6□□□□□ -1.03
SFSWAP-209ENST00000540469 PRR4Q16378 134 aa8.6□□□□□ -1.03
SFSWAP-209ENST00000540469 AKAP9Q99996 3911 aa8.6□□□□□ -1.03
SFSWAP-209ENST00000540469 ERC2-IT1O76042 136 aa8.6□□□□□ -1.03
SFSWAP-209ENST00000540469 LYRM9A8MSI8 78 aa8.59□□□□□ -1.03
SFSWAP-209ENST00000540469 PSPHP1O15172 72 aa8.59□□□□□ -1.03
SFSWAP-209ENST00000540469 LINC00612Q8N6U2 182 aa8.59□□□□□ -1.03
SFSWAP-209ENST00000540469 M0R378 163 aa8.58□□□□□ -1.04
SFSWAP-209ENST00000540469 OCR1Q9BZK8 76 aa8.58□□□□□ -1.04
SFSWAP-209ENST00000540469 SMIM29Q86T20 159 aa8.57□□□□□ -1.04
SFSWAP-209ENST00000540469 LELP1Q5T871 98 aa8.57□□□□□ -1.04
SFSWAP-209ENST00000540469 RETNQ9HD89 108 aa8.56□□□□□ -1.04
SFSWAP-209ENST00000540469 VPREB1P12018 145 aa8.55□□□□□ -1.04
SFSWAP-209ENST00000540469 NKAPP1Q8N9T2 125 aa8.54□□□□□ -1.04
SFSWAP-209ENST00000540469 LINC00528Q8N1L1 170 aa8.54□□□□□ -1.04
SFSWAP-209ENST00000540469 GVQW2A0A096LPI5 108 aaPredicted RBP8.53□□□□□ -1.04
SFSWAP-209ENST00000540469 PMAIP1Q13794 54 aa8.53□□□□□ -1.04
SFSWAP-209ENST00000540469 Q6ZRU5 148 aa8.52□□□□□ -1.05
SFSWAP-209ENST00000540469 A8MU10 97 aa8.52□□□□□ -1.05
SFSWAP-209ENST00000540469 Q6ZTC4 211 aa8.52□□□□□ -1.05
SFSWAP-209ENST00000540469 KRTAP1-3Q8IUG1 177 aa8.51□□□□□ -1.05
SFSWAP-209ENST00000540469 SPART-AS1P0CW21 52 aa8.51□□□□□ -1.05
SFSWAP-209ENST00000540469 KPRPQ5T749 579 aaPredicted RBP8.51□□□□□ -1.05
SFSWAP-209ENST00000540469 EGFEM1PQ0D2K5 195 aa8.5□□□□□ -1.05
SFSWAP-209ENST00000540469 PRR34Q9NV39 138 aa8.49□□□□□ -1.05
SFSWAP-209ENST00000540469 NSD1Q96L73 2696 aaPredicted RBP8.49□□□□□ -1.05
SFSWAP-209ENST00000540469 APOC4P55056 127 aa8.49□□□□□ -1.05
SFSWAP-209ENST00000540469 C1orf64Q8NEQ6 169 aa8.47□□□□□ -1.05
SFSWAP-209ENST00000540469 hDV103S1A0JD37 113 aa8.46□□□□□ -1.05
SFSWAP-209ENST00000540469 C1orf137Q5JT78 98 aa8.46□□□□□ -1.05
SFSWAP-209ENST00000540469 IGKV2D-24A0A075B6R9 120 aa8.46□□□□□ -1.06
SFSWAP-209ENST00000540469 WFDC10BQ8IUB3 73 aa8.46□□□□□ -1.06
SFSWAP-209ENST00000540469 ETDCA0A1B0GVM5 59 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 RPL37AP8A6NKH3 93 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 Q8N377 158 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 COL6A5A8TX70 2615 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 STAB1Q9NY15 2570 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 INAFM1C9JVW0 142 aa8.45□□□□□ -1.06
SFSWAP-209ENST00000540469 Q6ZRP5 223 aa8.44□□□□□ -1.06
SFSWAP-209ENST00000540469 SYCNQ0VAF6 134 aa8.42□□□□□ -1.06
SFSWAP-209ENST00000540469 A0A1W2PNM2 257 aa8.42□□□□□ -1.06
SFSWAP-209ENST00000540469 K7EQZ3 153 aa8.42□□□□□ -1.06
SFSWAP-209ENST00000540469 C7orf33Q8WU49 177 aa8.42□□□□□ -1.06
SFSWAP-209ENST00000540469 TENM1Q9UKZ4 2725 aa8.41□□□□□ -1.06
SFSWAP-209ENST00000540469 UBE2BP63146 152 aa8.41□□□□□ -1.06
SFSWAP-209ENST00000540469 WFDC13Q8IUB5 93 aa8.41□□□□□ -1.06
SFSWAP-209ENST00000540469 Q8NAQ8 132 aa8.4□□□□□ -1.06
SFSWAP-209ENST00000540469 ST20-AS1Q8NBB2 130 aa8.4□□□□□ -1.06
SFSWAP-209ENST00000540469 DHRS4-AS1Q9P1J3 65 aa8.4□□□□□ -1.06
SFSWAP-209ENST00000540469 SPTSSBQ8NFR3 76 aa8.4□□□□□ -1.06
SFSWAP-209ENST00000540469 DEFB116Q30KQ4 102 aa8.4□□□□□ -1.07
SFSWAP-209ENST00000540469 Q8NBF4 154 aa8.4□□□□□ -1.07
SFSWAP-209ENST00000540469 IGLV5-48A0A075B6I7 105 aa8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 A8MUN3 132 aa8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 SERTAD4-AS1Q5TG53 156 aa8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 C15orf56Q8N910 161 aa8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 MP68P56378 58 aa8.39□□□□□ -1.07
SFSWAP-209ENST00000540469 TRAV22A0A0B4J277 110 aa8.38□□□□□ -1.07
SFSWAP-209ENST00000540469 PRR15Q8IV56 129 aa8.38□□□□□ -1.07
SFSWAP-209ENST00000540469 KCNQ1DNQ9H478 68 aa8.38□□□□□ -1.07
SFSWAP-209ENST00000540469 HCG22E2RYF7 251 aa8.37□□□□□ -1.07
SFSWAP-209ENST00000540469 Q1T7F1 81 aa8.37□□□□□ -1.07
SFSWAP-209ENST00000540469 KRTAP1-1Q07627 177 aa8.37□□□□□ -1.07
SFSWAP-209ENST00000540469 VWFP04275 2813 aa8.36□□□□□ -1.07
SFSWAP-209ENST00000540469 Q6ZRX8 168 aa8.36□□□□□ -1.07
SFSWAP-209ENST00000540469 DSCR10P59022 87 aa8.36□□□□□ -1.07
SFSWAP-209ENST00000540469 LINC00208Q96KT6 92 aa8.35□□□□□ -1.07
SFSWAP-209ENST00000540469 NDUFB1O75438 58 aa8.35□□□□□ -1.07
SFSWAP-209ENST00000540469 KRTAP10-3P60369 221 aa8.34□□□□□ -1.07
SFSWAP-209ENST00000540469 PSCAO43653 123 aa8.34□□□□□ -1.07
SFSWAP-209ENST00000540469 A0A1B0GW54 56 aa8.34□□□□□ -1.07
SFSWAP-209ENST00000540469 A0A0G2JQZ4 141 aa8.33□□□□□ -1.08
SFSWAP-209ENST00000540469 A0A1W2PNN7 141 aa8.33□□□□□ -1.08
SFSWAP-209ENST00000540469 NOTCH1P46531 2555 aa8.33□□□□□ -1.08
SFSWAP-209ENST00000540469 Q9BRP9 147 aa8.33□□□□□ -1.08
SFSWAP-209ENST00000540469 FAM168BA1KXE4 195 aa8.32□□□□□ -1.08
SFSWAP-209ENST00000540469 CHKB-CPT1BH3BT56 60 aa8.32□□□□□ -1.08
SFSWAP-209ENST00000540469 ZCCHC13Q8WW36 166 aaKnown RBP8.31□□□□□ -1.08
SFSWAP-209ENST00000540469 B9D2Q9BPU9 175 aa8.3□□□□□ -1.08
SFSWAP-209ENST00000540469 ANK3Q12955 4377 aaKnown RBP8.3□□□□□ -1.08
SFSWAP-209ENST00000540469 LCE6AA0A183 80 aa8.3□□□□□ -1.08
SFSWAP-209ENST00000540469 TRRAPQ9Y4A5 3859 aa8.3□□□□□ -1.08
SFSWAP-209ENST00000540469 MRPL55Q7Z7F7 128 aaKnown RBP8.29□□□□□ -1.08
SFSWAP-209ENST00000540469 KRTAP26-1Q6PEX3 210 aa8.29□□□□□ -1.08
SFSWAP-209ENST00000540469 A0A087WSZ3 146 aa8.28□□□□□ -1.08
SFSWAP-209ENST00000540469 LINC00476Q8WZB0 136 aa8.28□□□□□ -1.08
SFSWAP-209ENST00000540469 CYP4F30PQ9H0H9 118 aa8.28□□□□□ -1.08
SFSWAP-209ENST00000540469 SPRR4Q96PI1 79 aa8.28□□□□□ -1.08
SFSWAP-209ENST00000540469 PRR15LQ9BU68 103 aa8.27□□□□□ -1.09
SFSWAP-209ENST00000540469 FBN1P35555 2871 aaKnown RBP8.27□□□□□ -1.09
SFSWAP-209ENST00000540469 RPL37AP61513 92 aaKnown RBP8.26□□□□□ -1.09
SFSWAP-209ENST00000540469 NBEAL1Q6ZS30 2694 aa8.26□□□□□ -1.09
SFSWAP-209ENST00000540469 MGAM2Q2M2H8 2515 aa8.26□□□□□ -1.09
SFSWAP-209ENST00000540469 IGLV1-50A0A075B6I6 118 aa8.26□□□□□ -1.09
SFSWAP-209ENST00000540469 TNP2Q05952 138 aa8.26□□□□□ -1.09
SFSWAP-209ENST00000540469 H0Y9P7 68 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms