RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 EIF4EBP3O60516 100 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-211ENST00000539080 LINC00308Q8TCZ7 52 aa11.01□□□□□ -0.65
CLIP1-211ENST00000539080 SPANXCQ9NY87 97 aa11.01□□□□□ -0.65
CLIP1-211ENST00000539080 AKR1D1P51857 326 aa11□□□□□ -0.65
CLIP1-211ENST00000539080 LINC00483Q53H64 154 aa11□□□□□ -0.65
CLIP1-211ENST00000539080 SPAG11AQ6PDA7 123 aa11□□□□□ -0.65
CLIP1-211ENST00000539080 JOSD1Q15040 202 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-211ENST00000539080 Q9BRP9 147 aa10.98□□□□□ -0.65
CLIP1-211ENST00000539080 ZNF73O43830 326 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-211ENST00000539080 PPDPFQ9H3Y8 114 aa10.96□□□□□ -0.65
CLIP1-211ENST00000539080 ERC2-IT1O76042 136 aa10.95□□□□□ -0.66
CLIP1-211ENST00000539080 GAGE2AQ6NT46 116 aa10.95□□□□□ -0.66
CLIP1-211ENST00000539080 TTTY13Q9BZ97 58 aa10.95□□□□□ -0.66
CLIP1-211ENST00000539080 S100A1P23297 94 aa10.94□□□□□ -0.66
CLIP1-211ENST00000539080 HINT1P49773 126 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-211ENST00000539080 C4orf48Q5BLP8 95 aa10.94□□□□□ -0.66
CLIP1-211ENST00000539080 LINC00518Q8N0U6 118 aa10.93□□□□□ -0.66
CLIP1-211ENST00000539080 RETNLBQ9BQ08 111 aa10.93□□□□□ -0.66
CLIP1-211ENST00000539080 SCGB1D4Q6XE38 83 aa10.92□□□□□ -0.66
CLIP1-211ENST00000539080 Q8NBF4 154 aa10.92□□□□□ -0.66
CLIP1-211ENST00000539080 COPS9Q8WXC6 57 aa10.92□□□□□ -0.66
CLIP1-211ENST00000539080 SPANXDQ9BXN6 97 aa10.92□□□□□ -0.66
CLIP1-211ENST00000539080 C5orf52A6NGY3 159 aa10.91□□□□□ -0.66
CLIP1-211ENST00000539080 ANKRD39Q53RE8 183 aa10.91□□□□□ -0.66
CLIP1-211ENST00000539080 OR13C6PQ8NH95 151 aa10.91□□□□□ -0.66
CLIP1-211ENST00000539080 SNRPEP62304 92 aaKnown RBP10.9□□□□□ -0.66
CLIP1-211ENST00000539080 SPINK1P00995 79 aa10.89□□□□□ -0.67
CLIP1-211ENST00000539080 Q6ZVH6 145 aa10.89□□□□□ -0.67
CLIP1-211ENST00000539080 SSBP3-AS1Q7Z2R9 100 aa10.89□□□□□ -0.67
CLIP1-211ENST00000539080 ATOH7Q8N100 152 aa10.89□□□□□ -0.67
CLIP1-211ENST00000539080 IFITM1P13164 125 aa10.88□□□□□ -0.67
CLIP1-211ENST00000539080 TPRXLQ17RH7 258 aa10.88□□□□□ -0.67
CLIP1-211ENST00000539080 IGLV7-46A0A075B6I9 117 aa10.86□□□□□ -0.67
CLIP1-211ENST00000539080 IGLV9-49A0A0B4J1Y8 123 aa10.86□□□□□ -0.67
CLIP1-211ENST00000539080 S100A2P29034 98 aa10.86□□□□□ -0.67
CLIP1-211ENST00000539080 MOBPQ13875 183 aa10.86□□□□□ -0.67
CLIP1-211ENST00000539080 HIST3H2BBQ8N257 126 aa10.86□□□□□ -0.67
CLIP1-211ENST00000539080 FP248Q71RG6 208 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-211ENST00000539080 HIST1H2BLQ99880 126 aa10.85□□□□□ -0.67
CLIP1-211ENST00000539080 DHRS4-AS1Q9P1J3 65 aa10.85□□□□□ -0.67
CLIP1-211ENST00000539080 RPS29P62273 56 aaKnown RBP10.84□□□□□ -0.67
CLIP1-211ENST00000539080 PCP2Q8IVA1 136 aa10.84□□□□□ -0.67
CLIP1-211ENST00000539080 ELOF1P60002 83 aaKnown RBP10.83□□□□□ -0.68
CLIP1-211ENST00000539080 ST20-AS1Q8NBB2 130 aa10.82□□□□□ -0.68
CLIP1-211ENST00000539080 S100A6P06703 90 aa10.81□□□□□ -0.68
CLIP1-211ENST00000539080 COX7BP24311 80 aa10.81□□□□□ -0.68
CLIP1-211ENST00000539080 C6orf99Q4VX62 202 aa10.81□□□□□ -0.68
CLIP1-211ENST00000539080 TRBV7-6A0A0J9YX20 115 aa10.8□□□□□ -0.68
CLIP1-211ENST00000539080 SPRR1BP22528 89 aa10.8□□□□□ -0.68
CLIP1-211ENST00000539080 SLC25A34Q6PIV7 304 aa10.8□□□□□ -0.68
CLIP1-211ENST00000539080 CDIP1Q9H305 208 aa10.8□□□□□ -0.68
CLIP1-211ENST00000539080 C9orf153Q5TBE3 101 aa10.79□□□□□ -0.68
CLIP1-211ENST00000539080 MUSTN1Q8IVN3 82 aa10.79□□□□□ -0.68
CLIP1-211ENST00000539080 HSBP1L1C9JCN9 74 aa10.78□□□□□ -0.68
CLIP1-211ENST00000539080 A6NDN8 102 aa10.76□□□□□ -0.69
CLIP1-211ENST00000539080 A0A1B0GWB2 263 aa10.75□□□□□ -0.69
CLIP1-211ENST00000539080 TRAV13-2A0A0B4J235 113 aa10.74□□□□□ -0.69
CLIP1-211ENST00000539080 Q8N377 158 aa10.74□□□□□ -0.69
CLIP1-211ENST00000539080 SLC25A20O43772 301 aa10.73□□□□□ -0.69
CLIP1-211ENST00000539080 LAMTOR3Q9UHA4 124 aa10.73□□□□□ -0.69
CLIP1-211ENST00000539080 A4D1N5 150 aa10.72□□□□□ -0.69
CLIP1-211ENST00000539080 MUC2Q02817 5179 aa10.71□□□□□ -0.7
CLIP1-211ENST00000539080 A0A0U1RQV1 116 aa10.7□□□□□ -0.7
CLIP1-211ENST00000539080 TAL2Q16559 108 aa10.7□□□□□ -0.7
CLIP1-211ENST00000539080 TEX49A0A1B0GTD5 131 aa10.69□□□□□ -0.7
CLIP1-211ENST00000539080 KRTAP13-3Q3SY46 172 aa10.69□□□□□ -0.7
CLIP1-211ENST00000539080 SCGB1D1O95968 90 aa10.67□□□□□ -0.7
CLIP1-211ENST00000539080 SMIM11BQ8TCY0 68 aa10.67□□□□□ -0.7
CLIP1-211ENST00000539080 NHP2Q9NX24 153 aaKnown RBP10.67□□□□□ -0.7
CLIP1-211ENST00000539080 DEFB105AQ8NG35 78 aa10.66□□□□□ -0.7
CLIP1-211ENST00000539080 IGLV5-48A0A075B6I7 105 aa10.65□□□□□ -0.7
CLIP1-211ENST00000539080 LIMD2Q9BT23 127 aa10.64□□□□□ -0.71
CLIP1-211ENST00000539080 Q1RN00 199 aa10.63□□□□□ -0.71
CLIP1-211ENST00000539080 MUC17Q685J3 4493 aa10.63□□□□□ -0.71
CLIP1-211ENST00000539080 LINC01547P58512 204 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-211ENST00000539080 CD164Q04900 197 aa10.62□□□□□ -0.71
CLIP1-211ENST00000539080 VAMP3Q15836 100 aa10.62□□□□□ -0.71
CLIP1-211ENST00000539080 PRO1933Q9H354 126 aa10.62□□□□□ -0.71
CLIP1-211ENST00000539080 COX8AP10176 69 aa10.61□□□□□ -0.71
CLIP1-211ENST00000539080 SMIM29Q86T20 159 aa10.61□□□□□ -0.71
CLIP1-211ENST00000539080 DLEU1O43261 78 aa10.6□□□□□ -0.71
CLIP1-211ENST00000539080 HRCT1Q6UXD1 115 aa10.58□□□□□ -0.72
CLIP1-211ENST00000539080 HIST1H4GQ99525 98 aa10.58□□□□□ -0.72
CLIP1-211ENST00000539080 ASB16-AS1Q495Z4 193 aa10.56□□□□□ -0.72
CLIP1-211ENST00000539080 LINC00575Q6W349 94 aa10.56□□□□□ -0.72
CLIP1-211ENST00000539080 H7C2G1 150 aa10.55□□□□□ -0.72
CLIP1-211ENST00000539080 Q5XG85 94 aa10.54□□□□□ -0.72
CLIP1-211ENST00000539080 SEC61BP60468 96 aaKnown RBP10.53□□□□□ -0.72
CLIP1-211ENST00000539080 hADV29S1A0JD25 119 aa10.52□□□□□ -0.73
CLIP1-211ENST00000539080 BVES-AS1Q5T3Y7 98 aa10.52□□□□□ -0.73
CLIP1-211ENST00000539080 C12orf57Q99622 126 aa10.51□□□□□ -0.73
CLIP1-211ENST00000539080 HIGD1BQ9P298 99 aa10.51□□□□□ -0.73
CLIP1-211ENST00000539080 SPATA45Q537H7 98 aa10.5□□□□□ -0.73
CLIP1-211ENST00000539080 XP32Q5T750 250 aa10.5□□□□□ -0.73
CLIP1-211ENST00000539080 C14orf144Q96I85 54 aa10.5□□□□□ -0.73
CLIP1-211ENST00000539080 PAM16Q9Y3D7 125 aa10.5□□□□□ -0.73
CLIP1-211ENST00000539080 F8WEM9 126 aa10.49□□□□□ -0.73
CLIP1-211ENST00000539080 Q6ZQY7 126 aa10.49□□□□□ -0.73
CLIP1-211ENST00000539080 VAMP8Q9BV40 100 aa10.49□□□□□ -0.73
CLIP1-211ENST00000539080 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms