RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 IGKV2-28A0A075B6P5 120 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 A6NDN8 102 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 SLC25A20O43772 301 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 IGKV2D-28P01615 120 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 NDUFV3P56181 108 aaKnown RBP3.44□□□□□ -1.86
CD44-237ENST00000534082 RPS29P62273 56 aaKnown RBP3.44□□□□□ -1.86
CD44-237ENST00000534082 KIAA1644Q3SXP7 199 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 Q5XG85 94 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 HRCT1Q6UXD1 115 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 Q6ZN92 141 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 SPRR4Q96PI1 79 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 TIMM21Q9BVV7 248 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 LINC00846Q9NV44 126 aa3.44□□□□□ -1.86
CD44-237ENST00000534082 MDN1Q9NU22 5596 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 VCYO14598 125 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 TRGC2P03986 189 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 HINT1P49773 126 aaPredicted RBP3.43□□□□□ -1.86
CD44-237ENST00000534082 ZNF345Q14585 488 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 RPL7L1Q6DKI1 246 aaKnown RBP3.43□□□□□ -1.86
CD44-237ENST00000534082 KCNRGQ8N5I3 272 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 PAM16Q9Y3D7 125 aa3.43□□□□□ -1.86
CD44-237ENST00000534082 IGLV5-37A0A075B6J1 123 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 A0A1B0GV50 99 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 PRSS2P07478 247 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 HBBP68871 147 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 NKAPP1Q8N9T2 125 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 FAM104AQ969W3 186 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 HIGD2AQ9BW72 106 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 GNB1LQ9BYB4 327 aa3.42□□□□□ -1.86
CD44-237ENST00000534082 TRBV24-1A0A075B6N3 115 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 KANTRA0A1W2PQU2 76 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 C9orf92A6NGG3 77 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 NDUFC2O95298 119 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 IFITM1P13164 125 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 RPL39P62891 51 aaKnown RBP3.41□□□□□ -1.86
CD44-237ENST00000534082 PMAIP1Q13794 54 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 KRTAP19-6Q3LI70 58 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 LINC01561Q8N1V8 128 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 C11orf52Q96A22 123 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 SPANXDQ9BXN6 97 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 TOMM7Q9P0U1 55 aa3.41□□□□□ -1.86
CD44-237ENST00000534082 MT2AP02795 61 aa3.4□□□□□ -1.87
CD44-237ENST00000534082 MT-ATP8P03928 68 aa3.4□□□□□ -1.87
CD44-237ENST00000534082 MRPS36P82909 103 aaKnown RBP3.4□□□□□ -1.87
CD44-237ENST00000534082 SPATA45Q537H7 98 aa3.4□□□□□ -1.87
CD44-237ENST00000534082 ZNF706Q9Y5V0 76 aaPredicted RBP3.4□□□□□ -1.87
CD44-237ENST00000534082 FXYD6-FXYD2A0A087WZ82 144 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 F8VRH5 84 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 F8W1H4 67 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 TMEM250H0YL14 139 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 SMKR1H3BMG3 65 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 H3BRM9 83 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 J3QQQ9 107 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 M0R378 163 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 DPM2O94777 84 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 SEC11AP67812 179 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 MOBPQ13875 183 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 ADIRFQ15847 76 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 BVES-AS1Q5T3Y7 98 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 Q8IZM0 81 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 ATOH7Q8N100 152 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 TMEM191AQ9H0A3 160 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 GPR98Q8WXG9 6306 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 KMT2DO14686 5537 aa3.39□□□□□ -1.87
CD44-237ENST00000534082 TRBV20OR9-2A0A075B6H5 130 aa3.38□□□□□ -1.87
CD44-237ENST00000534082 NMUP48645 174 aa3.38□□□□□ -1.87
CD44-237ENST00000534082 HERVK_113P63121 156 aa3.38□□□□□ -1.87
CD44-237ENST00000534082 CCL20P78556 96 aa3.38□□□□□ -1.87
CD44-237ENST00000534082 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
CD44-237ENST00000534082 A0A0A0MQY5 61 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 FAM240AA0A1B0GVK7 77 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 UMAD1C9J7I0 102 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 C9JQL5 133 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 MT1FP04733 61 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 PFN2P35080 140 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 KRTAP10-7P60409 375 aaPredicted RBP3.37□□□□□ -1.87
CD44-237ENST00000534082 AMN1Q8IY45 258 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 FAM213BQ8TBF2 198 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 PYGO1Q9Y3Y4 419 aa3.37□□□□□ -1.87
CD44-237ENST00000534082 IGLV9-49A0A0B4J1Y8 123 aa3.36□□□□□ -1.87
CD44-237ENST00000534082 FAM236AA0A1B0GUQ0 79 aa3.36□□□□□ -1.87
CD44-237ENST00000534082 FAM236BA0A1B0GV22 79 aa3.36□□□□□ -1.87
CD44-237ENST00000534082 RPL37P61927 97 aaKnown RBP3.36□□□□□ -1.87
CD44-237ENST00000534082 LYRM7Q5U5X0 104 aa3.36□□□□□ -1.87
CD44-237ENST00000534082 SPCS1Q9Y6A9 102 aa3.36□□□□□ -1.87
CD44-237ENST00000534082 IGLV4-3A0A075B6K6 122 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 A0A1W2PPM0 123 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 PPP1R17O96001 155 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 IGLV6-57P01721 117 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 TMEM258P61165 79 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 PMCHL1Q16048 86 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 LINC00483Q53H64 154 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 MANBALQ9NQG1 85 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 GNG13Q9P2W3 67 aa3.35□□□□□ -1.87
CD44-237ENST00000534082 IGLV5-39A0A0G2JS06 123 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 UQCRQO14949 82 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 FABP2P12104 132 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 IFI27P40305 119 aaPredicted RBP3.34□□□□□ -1.87
CD44-237ENST00000534082 CXCL5P42830 114 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 C9orf153Q5TBE3 101 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms