RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 BPTFQ12830 3046 aa9.81□□□□□ -0.84
PCDHA9-202ENST00000532602 SSBP3-AS1Q7Z2R9 100 aa9.8□□□□□ -0.84
PCDHA9-202ENST00000532602 A8MWP4 228 aa9.8□□□□□ -0.84
PCDHA9-202ENST00000532602 SMCPP49901 116 aaPredicted RBP9.79□□□□□ -0.84
PCDHA9-202ENST00000532602 LINC00336Q6ZUF6 198 aa9.79□□□□□ -0.84
PCDHA9-202ENST00000532602 PRRC2CQ9Y520 2896 aaKnown RBP9.79□□□□□ -0.84
PCDHA9-202ENST00000532602 A0A087WTM6 91 aa9.78□□□□□ -0.84
PCDHA9-202ENST00000532602 COX6B2Q6YFQ2 88 aa9.78□□□□□ -0.84
PCDHA9-202ENST00000532602 TM2D3Q9BRN9 247 aa9.78□□□□□ -0.84
PCDHA9-202ENST00000532602 ZNF861PO60384 105 aa9.77□□□□□ -0.84
PCDHA9-202ENST00000532602 LINC00304Q8N9R0 145 aa9.77□□□□□ -0.84
PCDHA9-202ENST00000532602 SMR3BP02814 79 aaPredicted RBP9.77□□□□□ -0.85
PCDHA9-202ENST00000532602 MRPL34Q9BQ48 92 aaKnown RBP9.77□□□□□ -0.85
PCDHA9-202ENST00000532602 LITAFQ99732 161 aa9.77□□□□□ -0.85
PCDHA9-202ENST00000532602 CHD9Q3L8U1 2897 aa9.76□□□□□ -0.85
PCDHA9-202ENST00000532602 LINC00612Q8N6U2 182 aa9.76□□□□□ -0.85
PCDHA9-202ENST00000532602 C9orf163Q8N9P6 203 aa9.76□□□□□ -0.85
PCDHA9-202ENST00000532602 PRO0461Q9UI25 63 aa9.76□□□□□ -0.85
PCDHA9-202ENST00000532602 LINC00528Q8N1L1 170 aa9.75□□□□□ -0.85
PCDHA9-202ENST00000532602 C15orf56Q8N910 161 aa9.74□□□□□ -0.85
PCDHA9-202ENST00000532602 CDH23Q9H251 3354 aa9.73□□□□□ -0.85
PCDHA9-202ENST00000532602 TLX1NBP0CAT3 122 aa9.71□□□□□ -0.85
PCDHA9-202ENST00000532602 PRUNE2Q8WUY3 3088 aa9.71□□□□□ -0.86
PCDHA9-202ENST00000532602 CASC10Q5T4H9 136 aa9.71□□□□□ -0.86
PCDHA9-202ENST00000532602 MAST4O15021 2626 aa9.7□□□□□ -0.86
PCDHA9-202ENST00000532602 PLA2G2DQ9UNK4 145 aa9.69□□□□□ -0.86
PCDHA9-202ENST00000532602 EIF4EBP3O60516 100 aaPredicted RBP9.68□□□□□ -0.86
PCDHA9-202ENST00000532602 IGFL1Q6UW32 110 aa9.68□□□□□ -0.86
PCDHA9-202ENST00000532602 ATRQ13535 2644 aa9.67□□□□□ -0.86
PCDHA9-202ENST00000532602 C9orf129Q5T035 196 aaKnown RBP9.67□□□□□ -0.86
PCDHA9-202ENST00000532602 XIRP2A4UGR9 3374 aa9.67□□□□□ -0.86
PCDHA9-202ENST00000532602 K7EQZ3 153 aa9.67□□□□□ -0.86
PCDHA9-202ENST00000532602 ANAPC11Q9NYG5 84 aa9.67□□□□□ -0.86
PCDHA9-202ENST00000532602 A0A0G2JQZ4 141 aa9.66□□□□□ -0.86
PCDHA9-202ENST00000532602 A0A1W2PNN7 141 aa9.66□□□□□ -0.86
PCDHA9-202ENST00000532602 APLNQ9ULZ1 77 aa9.66□□□□□ -0.86
PCDHA9-202ENST00000532602 UNC80Q8N2C7 3258 aa9.65□□□□□ -0.86
PCDHA9-202ENST00000532602 C8orf17Q9NRJ1 99 aa9.65□□□□□ -0.87
PCDHA9-202ENST00000532602 IGLV7-43P04211 117 aa9.64□□□□□ -0.87
PCDHA9-202ENST00000532602 PRR15Q8IV56 129 aa9.63□□□□□ -0.87
PCDHA9-202ENST00000532602 ZNF575Q86XF7 245 aa9.63□□□□□ -0.87
PCDHA9-202ENST00000532602 ERC2-IT1O76042 136 aa9.63□□□□□ -0.87
PCDHA9-202ENST00000532602 CNBPP62633 177 aaKnown RBP9.63□□□□□ -0.87
PCDHA9-202ENST00000532602 A0A1B0GVX0 72 aa9.62□□□□□ -0.87
PCDHA9-202ENST00000532602 DSCR10P59022 87 aa9.62□□□□□ -0.87
PCDHA9-202ENST00000532602 C9orf92A6NGG3 77 aa9.61□□□□□ -0.87
PCDHA9-202ENST00000532602 RPS28P62857 69 aaKnown RBP9.6□□□□□ -0.87
PCDHA9-202ENST00000532602 OBSCN-AS1Q96MR7 158 aa9.6□□□□□ -0.87
PCDHA9-202ENST00000532602 IGLV8-61A0A075B6I0 122 aa9.59□□□□□ -0.87
PCDHA9-202ENST00000532602 Q8N377 158 aa9.59□□□□□ -0.87
PCDHA9-202ENST00000532602 PRO0628Q9UI54 55 aa9.58□□□□□ -0.88
PCDHA9-202ENST00000532602 PSORS1C2Q9UIG4 136 aa9.58□□□□□ -0.88
PCDHA9-202ENST00000532602 LINC01600Q96MT4 127 aa9.58□□□□□ -0.88
PCDHA9-202ENST00000532602 CR1P17927 2039 aa9.58□□□□□ -0.88
PCDHA9-202ENST00000532602 RBM12B-AS1Q9P1G2 102 aa9.56□□□□□ -0.88
PCDHA9-202ENST00000532602 SPRR4Q96PI1 79 aa9.55□□□□□ -0.88
PCDHA9-202ENST00000532602 HELZ2Q9BYK8 2649 aaKnown RBP9.55□□□□□ -0.88
PCDHA9-202ENST00000532602 LAMA2P24043 3122 aaKnown RBP9.54□□□□□ -0.88
PCDHA9-202ENST00000532602 COA5Q86WW8 74 aa9.53□□□□□ -0.88
PCDHA9-202ENST00000532602 TRANK1O15050 2925 aa9.52□□□□□ -0.88
PCDHA9-202ENST00000532602 IGLV5-37A0A075B6J1 123 aa9.52□□□□□ -0.89
PCDHA9-202ENST00000532602 UQCR11O14957 56 aa9.52□□□□□ -0.89
PCDHA9-202ENST00000532602 CFAP54Q96N23 3096 aa9.51□□□□□ -0.89
PCDHA9-202ENST00000532602 FLNAP21333 2647 aaKnown RBP9.5□□□□□ -0.89
PCDHA9-202ENST00000532602 TNP2Q05952 138 aa9.48□□□□□ -0.89
PCDHA9-202ENST00000532602 CYP4F30PQ9H0H9 118 aa9.48□□□□□ -0.89
PCDHA9-202ENST00000532602 DNAH14Q0VDD8 3507 aa9.47□□□□□ -0.89
PCDHA9-202ENST00000532602 SZT2Q5T011 3432 aa9.46□□□□□ -0.89
PCDHA9-202ENST00000532602 MGAQ8IWI9 3026 aa9.44□□□□□ -0.9
PCDHA9-202ENST00000532602 ITPR3Q14573 2671 aa9.44□□□□□ -0.9
PCDHA9-202ENST00000532602 TRIOO75962 3097 aa9.42□□□□□ -0.9
PCDHA9-202ENST00000532602 STAB1Q9NY15 2570 aa9.42□□□□□ -0.9
PCDHA9-202ENST00000532602 KLKP1Q107X0 134 aa9.41□□□□□ -0.9
PCDHA9-202ENST00000532602 CELSR3Q9NYQ7 3312 aa9.41□□□□□ -0.9
PCDHA9-202ENST00000532602 C4orf26Q17RF5 130 aa9.41□□□□□ -0.9
PCDHA9-202ENST00000532602 WIPF1O43516 503 aa9.4□□□□□ -0.9
PCDHA9-202ENST00000532602 CRIPTQ9P021 101 aa9.4□□□□□ -0.9
PCDHA9-202ENST00000532602 WDFY4Q6ZS81 3184 aa9.4□□□□□ -0.91
PCDHA9-202ENST00000532602 A0A1W2PNM2 257 aa9.4□□□□□ -0.91
PCDHA9-202ENST00000532602 CD164Q04900 197 aa9.4□□□□□ -0.91
PCDHA9-202ENST00000532602 SPINT4Q6UDR6 99 aa9.39□□□□□ -0.91
PCDHA9-202ENST00000532602 A8MUN3 132 aa9.39□□□□□ -0.91
PCDHA9-202ENST00000532602 MIR22HGQ0VDD5 57 aa9.37□□□□□ -0.91
PCDHA9-202ENST00000532602 IGLV5-48A0A075B6I7 105 aa9.36□□□□□ -0.91
PCDHA9-202ENST00000532602 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.35□□□□□ -0.91
PCDHA9-202ENST00000532602 Q6ZSA8 131 aa9.35□□□□□ -0.91
PCDHA9-202ENST00000532602 IGLV7-46A0A075B6I9 117 aa9.32□□□□□ -0.92
PCDHA9-202ENST00000532602 CFAP46Q8IYW2 2715 aa9.32□□□□□ -0.92
PCDHA9-202ENST00000532602 A0A0C4DFX4 3053 aa9.32□□□□□ -0.92
PCDHA9-202ENST00000532602 FAM104AQ969W3 186 aa9.32□□□□□ -0.92
PCDHA9-202ENST00000532602 FAM229BQ4G0N7 80 aa9.31□□□□□ -0.92
PCDHA9-202ENST00000532602 AKAP13Q12802 2813 aa9.3□□□□□ -0.92
PCDHA9-202ENST00000532602 SPANXA2-OT1Q8N9U9 137 aa9.29□□□□□ -0.92
PCDHA9-202ENST00000532602 LINC01554Q52M75 96 aa9.28□□□□□ -0.92
PCDHA9-202ENST00000532602 Q8N1X5 172 aa9.27□□□□□ -0.93
PCDHA9-202ENST00000532602 PRR26Q8N8Z3 221 aa9.27□□□□□ -0.93
PCDHA9-202ENST00000532602 SETXQ7Z333 2677 aaKnown RBP9.24□□□□□ -0.93
PCDHA9-202ENST00000532602 SPTBN5Q9NRC6 3674 aaKnown RBP9.23□□□□□ -0.93
PCDHA9-202ENST00000532602 PLAC8Q9NZF1 115 aa9.23□□□□□ -0.93
PCDHA9-202ENST00000532602 VCANP13611 3396 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms