RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NPC2P61916 151 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 PRR3P79522 188 aaKnown RBP4.66□□□□□ -1.66
CD44-228ENST00000528455 C22orf24Q9Y442 160 aa4.66□□□□□ -1.66
CD44-228ENST00000528455 TRAV13-2A0A0B4J235 113 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 PANO1I0J062 215 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 CFC1BP0CG36 223 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 CFC1P0CG37 223 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 BVES-AS1Q5T3Y7 98 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 SERTAD4-AS1Q5TG53 156 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 KRTAP7-1Q8IUC3 87 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 Q8N9P0 234 aaPredicted RBP4.65□□□□□ -1.67
CD44-228ENST00000528455 NKAPP1Q8N9T2 125 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 TMEM126AQ9H061 195 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 CBY1Q9Y3M2 126 aa4.65□□□□□ -1.67
CD44-228ENST00000528455 IGKV2-28A0A075B6P5 120 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 A0A1B0GWB2 263 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 FAM168BA1KXE4 195 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 IGKV2D-28P01615 120 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 HINT1P49773 126 aaPredicted RBP4.64□□□□□ -1.67
CD44-228ENST00000528455 FXYD2P54710 66 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 MRPL55Q7Z7F7 128 aaKnown RBP4.64□□□□□ -1.67
CD44-228ENST00000528455 Q8NDZ9 215 aa4.64□□□□□ -1.67
CD44-228ENST00000528455 IGLV1-50A0A075B6I6 118 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 A0A0B4J2C4 111 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 A6NDN8 102 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 PCP4L1A6NKN8 68 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 IGLV6-57P01721 117 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 S100A7L2Q5SY68 101 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 CIRBP-AS1Q8TBR5 109 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 LINC00167Q96N53 147 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 PRO1854Q9UHT4 67 aa4.63□□□□□ -1.67
CD44-228ENST00000528455 XGP55808 180 aa4.62□□□□□ -1.67
CD44-228ENST00000528455 FAM19A5Q7Z5A7 132 aaPredicted RBP4.62□□□□□ -1.67
CD44-228ENST00000528455 LINC00337Q8N6G1 96 aa4.62□□□□□ -1.67
CD44-228ENST00000528455 OR13C6PQ8NH95 151 aa4.62□□□□□ -1.67
CD44-228ENST00000528455 C7orf33Q8WU49 177 aa4.62□□□□□ -1.67
CD44-228ENST00000528455 RAB37Q96AX2 223 aa4.62□□□□□ -1.67
CD44-228ENST00000528455 M0QXV9 152 aa4.61□□□□□ -1.67
CD44-228ENST00000528455 SCXQ7RTU7 201 aa4.61□□□□□ -1.67
CD44-228ENST00000528455 PHF5AQ7RTV0 110 aaKnown RBP4.61□□□□□ -1.67
CD44-228ENST00000528455 KCNQ1DNQ9H478 68 aa4.61□□□□□ -1.67
CD44-228ENST00000528455 NHP2Q9NX24 153 aaKnown RBP4.61□□□□□ -1.67
CD44-228ENST00000528455 TRBV10-3A0A0K0K1G6 114 aa4.6□□□□□ -1.67
CD44-228ENST00000528455 GAGE10A6NGK3 116 aa4.6□□□□□ -1.67
CD44-228ENST00000528455 NCR3O14931 201 aa4.6□□□□□ -1.67
CD44-228ENST00000528455 SRRM2Q9UQ35 2752 aaKnown RBP4.59□□□□□ -1.67
CD44-228ENST00000528455 VPS13BQ7Z7G8 4022 aa4.59□□□□□ -1.67
CD44-228ENST00000528455 TRBV7-6A0A0J9YX20 115 aa4.59□□□□□ -1.67
CD44-228ENST00000528455 RPL37AP8A6NKH3 93 aa4.59□□□□□ -1.67
CD44-228ENST00000528455 SMR3BP02814 79 aaPredicted RBP4.59□□□□□ -1.67
CD44-228ENST00000528455 RPL28P46779 137 aaKnown RBP4.59□□□□□ -1.67
CD44-228ENST00000528455 DNAH8Q96JB1 4490 aa4.59□□□□□ -1.67
CD44-228ENST00000528455 SNHG12Q9BXW3 62 aa4.59□□□□□ -1.67
CD44-228ENST00000528455 FAT1Q14517 4588 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 SPRR1AP35321 89 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 UBE2BP63146 152 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 VAMP3Q15836 100 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 BATFQ16520 125 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 Q5VSD8 79 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 REG3GQ6UW15 175 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 SMIM11BQ8TCY0 68 aa4.58□□□□□ -1.68
CD44-228ENST00000528455 TRAV23DV6A0A075B6W5 121 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 H0Y9J4 135 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 H0YGX0 51 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 ZNF73O43830 326 aaPredicted RBP4.57□□□□□ -1.68
CD44-228ENST00000528455 INAFM2P0DMQ5 153 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 RPL13AP40429 203 aaKnown RBP4.57□□□□□ -1.68
CD44-228ENST00000528455 COL5A1-AS1Q5SY13 56 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 PRR26Q8N8Z3 221 aa4.57□□□□□ -1.68
CD44-228ENST00000528455 KRTAP4-16G5E9R7 235 aaPredicted RBP4.56□□□□□ -1.68
CD44-228ENST00000528455 COX6CP09669 75 aa4.56□□□□□ -1.68
CD44-228ENST00000528455 HAMPP81172 84 aa4.56□□□□□ -1.68
CD44-228ENST00000528455 KRTAP11-1Q8IUC1 163 aa4.56□□□□□ -1.68
CD44-228ENST00000528455 PSORS1C2Q9UIG4 136 aa4.56□□□□□ -1.68
CD44-228ENST00000528455 H7C2G1 150 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 K7ERJ3 54 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 BCE1O60756 84 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 TSPAN13O95857 204 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 C6orf99Q4VX62 202 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 DIRC1Q969H9 104 aa4.55□□□□□ -1.68
CD44-228ENST00000528455 ETDCA0A1B0GVM5 59 aa4.54□□□□□ -1.68
CD44-228ENST00000528455 TAX1BP3O14907 124 aa4.54□□□□□ -1.68
CD44-228ENST00000528455 SNCGO76070 127 aa4.54□□□□□ -1.68
CD44-228ENST00000528455 PSMB2P49721 201 aa4.54□□□□□ -1.68
CD44-228ENST00000528455 Q1RN00 199 aa4.54□□□□□ -1.68
CD44-228ENST00000528455 SCGB1C2P0DMR2 95 aa4.53□□□□□ -1.68
CD44-228ENST00000528455 COX7BP24311 80 aa4.53□□□□□ -1.68
CD44-228ENST00000528455 ELOF1P60002 83 aaKnown RBP4.53□□□□□ -1.68
CD44-228ENST00000528455 C1orf137Q5JT78 98 aa4.53□□□□□ -1.68
CD44-228ENST00000528455 A0A1B0GX51 115 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 SLC25A20O43772 301 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 ZNF861PO60384 105 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 IGLV7-43P04211 117 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 LINC00575Q6W349 94 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 Q6ZRX8 168 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 FAM19A1Q7Z5A9 133 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 KRTAP13-1Q8IUC0 172 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 DHRS4-AS1Q9P1J3 65 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 HERC1Q15751 4861 aa4.52□□□□□ -1.69
CD44-228ENST00000528455 TRBV20-1A0A075B6N2 111 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms