RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 JOSD1Q15040 202 aaPredicted RBP11.98□□□□□ -0.49
VPS28-206ENST00000526734 C3orf22Q8N5N4 141 aa11.98□□□□□ -0.49
VPS28-206ENST00000526734 LINC00308Q8TCZ7 52 aa11.98□□□□□ -0.49
VPS28-206ENST00000526734 LINC00483Q53H64 154 aa11.96□□□□□ -0.49
VPS28-206ENST00000526734 ZNF73O43830 326 aaPredicted RBP11.95□□□□□ -0.5
VPS28-206ENST00000526734 EIF4EBP3O60516 100 aaPredicted RBP11.95□□□□□ -0.5
VPS28-206ENST00000526734 S100A1P23297 94 aa11.95□□□□□ -0.5
VPS28-206ENST00000526734 HINT1P49773 126 aaPredicted RBP11.94□□□□□ -0.5
VPS28-206ENST00000526734 COPS9Q8WXC6 57 aa11.93□□□□□ -0.5
VPS28-206ENST00000526734 RNF213Q63HN8 5207 aa11.92□□□□□ -0.5
VPS28-206ENST00000526734 C4orf48Q5BLP8 95 aa11.92□□□□□ -0.5
VPS28-206ENST00000526734 LINC00518Q8N0U6 118 aa11.92□□□□□ -0.5
VPS28-206ENST00000526734 Q9BRP9 147 aa11.92□□□□□ -0.5
VPS28-206ENST00000526734 SPANXDQ9BXN6 97 aa11.92□□□□□ -0.5
VPS28-206ENST00000526734 SNRPEP62304 92 aaKnown RBP11.91□□□□□ -0.5
VPS28-206ENST00000526734 SCGB1D4Q6XE38 83 aa11.91□□□□□ -0.5
VPS28-206ENST00000526734 TTTY13Q9BZ97 58 aa11.91□□□□□ -0.5
VPS28-206ENST00000526734 PPDPFQ9H3Y8 114 aa11.91□□□□□ -0.5
VPS28-206ENST00000526734 C5orf52A6NGY3 159 aa11.9□□□□□ -0.5
VPS28-206ENST00000526734 GAGE2AQ6NT46 116 aa11.9□□□□□ -0.5
VPS28-206ENST00000526734 ERC2-IT1O76042 136 aa11.89□□□□□ -0.51
VPS28-206ENST00000526734 OR13C6PQ8NH95 151 aa11.89□□□□□ -0.51
VPS28-206ENST00000526734 LPAP08519 4548 aa11.89□□□□□ -0.51
VPS28-206ENST00000526734 ANKRD39Q53RE8 183 aa11.88□□□□□ -0.51
VPS28-206ENST00000526734 Q6ZVH6 145 aa11.88□□□□□ -0.51
VPS28-206ENST00000526734 IFITM1P13164 125 aa11.87□□□□□ -0.51
VPS28-206ENST00000526734 Q8NBF4 154 aa11.87□□□□□ -0.51
VPS28-206ENST00000526734 SSBP3-AS1Q7Z2R9 100 aa11.86□□□□□ -0.51
VPS28-206ENST00000526734 S100A2P29034 98 aa11.85□□□□□ -0.51
VPS28-206ENST00000526734 ATOH7Q8N100 152 aa11.85□□□□□ -0.51
VPS28-206ENST00000526734 RETNLBQ9BQ08 111 aa11.85□□□□□ -0.51
VPS28-206ENST00000526734 SPINK1P00995 79 aa11.84□□□□□ -0.51
VPS28-206ENST00000526734 HIST3H2BBQ8N257 126 aa11.84□□□□□ -0.51
VPS28-206ENST00000526734 DHRS4-AS1Q9P1J3 65 aa11.83□□□□□ -0.52
VPS28-206ENST00000526734 MOBPQ13875 183 aa11.82□□□□□ -0.52
VPS28-206ENST00000526734 TPRXLQ17RH7 258 aa11.82□□□□□ -0.52
VPS28-206ENST00000526734 HIST1H2BLQ99880 126 aa11.82□□□□□ -0.52
VPS28-206ENST00000526734 IGLV7-46A0A075B6I9 117 aa11.81□□□□□ -0.52
VPS28-206ENST00000526734 IGLV9-49A0A0B4J1Y8 123 aa11.81□□□□□ -0.52
VPS28-206ENST00000526734 RPS29P62273 56 aaKnown RBP11.81□□□□□ -0.52
VPS28-206ENST00000526734 FP248Q71RG6 208 aaPredicted RBP11.81□□□□□ -0.52
VPS28-206ENST00000526734 S100A6P06703 90 aa11.8□□□□□ -0.52
VPS28-206ENST00000526734 PCP2Q8IVA1 136 aa11.79□□□□□ -0.52
VPS28-206ENST00000526734 HSBP1L1C9JCN9 74 aa11.78□□□□□ -0.52
VPS28-206ENST00000526734 COX7BP24311 80 aa11.78□□□□□ -0.52
VPS28-206ENST00000526734 ELOF1P60002 83 aaKnown RBP11.78□□□□□ -0.52
VPS28-206ENST00000526734 SLC25A34Q6PIV7 304 aa11.78□□□□□ -0.52
VPS28-206ENST00000526734 TRBV7-6A0A0J9YX20 115 aa11.77□□□□□ -0.53
VPS28-206ENST00000526734 C6orf99Q4VX62 202 aa11.77□□□□□ -0.53
VPS28-206ENST00000526734 SPRR1BP22528 89 aa11.76□□□□□ -0.53
VPS28-206ENST00000526734 ST20-AS1Q8NBB2 130 aa11.75□□□□□ -0.53
VPS28-206ENST00000526734 C9orf153Q5TBE3 101 aa11.74□□□□□ -0.53
VPS28-206ENST00000526734 MUSTN1Q8IVN3 82 aa11.74□□□□□ -0.53
VPS28-206ENST00000526734 CDIP1Q9H305 208 aa11.74□□□□□ -0.53
VPS28-206ENST00000526734 TRAV13-2A0A0B4J235 113 aa11.72□□□□□ -0.53
VPS28-206ENST00000526734 A0A1B0GWB2 263 aa11.72□□□□□ -0.53
VPS28-206ENST00000526734 A6NDN8 102 aa11.72□□□□□ -0.53
VPS28-206ENST00000526734 A4D1N5 150 aa11.69□□□□□ -0.54
VPS28-206ENST00000526734 SLC25A20O43772 301 aa11.69□□□□□ -0.54
VPS28-206ENST00000526734 LAMTOR3Q9UHA4 124 aa11.69□□□□□ -0.54
VPS28-206ENST00000526734 A0A0U1RQV1 116 aa11.66□□□□□ -0.54
VPS28-206ENST00000526734 Q8N377 158 aa11.66□□□□□ -0.54
VPS28-206ENST00000526734 TAL2Q16559 108 aa11.65□□□□□ -0.54
VPS28-206ENST00000526734 NHP2Q9NX24 153 aaKnown RBP11.65□□□□□ -0.54
VPS28-206ENST00000526734 TEX49A0A1B0GTD5 131 aa11.64□□□□□ -0.55
VPS28-206ENST00000526734 SCGB1D1O95968 90 aa11.62□□□□□ -0.55
VPS28-206ENST00000526734 KRTAP13-3Q3SY46 172 aa11.62□□□□□ -0.55
VPS28-206ENST00000526734 SMIM11BQ8TCY0 68 aa11.61□□□□□ -0.55
VPS28-206ENST00000526734 LIMD2Q9BT23 127 aa11.61□□□□□ -0.55
VPS28-206ENST00000526734 IGLV5-48A0A075B6I7 105 aa11.6□□□□□ -0.55
VPS28-206ENST00000526734 VAMP3Q15836 100 aa11.59□□□□□ -0.55
VPS28-206ENST00000526734 DEFB105AQ8NG35 78 aa11.59□□□□□ -0.55
VPS28-206ENST00000526734 PRO1933Q9H354 126 aa11.58□□□□□ -0.56
VPS28-206ENST00000526734 CD164Q04900 197 aa11.57□□□□□ -0.56
VPS28-206ENST00000526734 COX8AP10176 69 aa11.56□□□□□ -0.56
VPS28-206ENST00000526734 Q1RN00 199 aa11.56□□□□□ -0.56
VPS28-206ENST00000526734 DLEU1O43261 78 aa11.55□□□□□ -0.56
VPS28-206ENST00000526734 LINC01547P58512 204 aaPredicted RBP11.54□□□□□ -0.56
VPS28-206ENST00000526734 HIST1H4GQ99525 98 aa11.54□□□□□ -0.56
VPS28-206ENST00000526734 MUC2Q02817 5179 aa11.53□□□□□ -0.56
VPS28-206ENST00000526734 SMIM29Q86T20 159 aa11.52□□□□□ -0.57
VPS28-206ENST00000526734 H7C2G1 150 aa11.5□□□□□ -0.57
VPS28-206ENST00000526734 HRCT1Q6UXD1 115 aa11.49□□□□□ -0.57
VPS28-206ENST00000526734 LINC00575Q6W349 94 aa11.49□□□□□ -0.57
VPS28-206ENST00000526734 MUC17Q685J3 4493 aa11.47□□□□□ -0.57
VPS28-206ENST00000526734 ASB16-AS1Q495Z4 193 aa11.47□□□□□ -0.57
VPS28-206ENST00000526734 BVES-AS1Q5T3Y7 98 aa11.47□□□□□ -0.57
VPS28-206ENST00000526734 Q5XG85 94 aa11.47□□□□□ -0.57
VPS28-206ENST00000526734 hADV29S1A0JD25 119 aa11.46□□□□□ -0.57
VPS28-206ENST00000526734 SEC61BP60468 96 aaKnown RBP11.46□□□□□ -0.57
VPS28-206ENST00000526734 HIGD1BQ9P298 99 aa11.46□□□□□ -0.57
VPS28-206ENST00000526734 F8WEM9 126 aa11.45□□□□□ -0.58
VPS28-206ENST00000526734 VAMP8Q9BV40 100 aa11.45□□□□□ -0.58
VPS28-206ENST00000526734 SPATA45Q537H7 98 aa11.44□□□□□ -0.58
VPS28-206ENST00000526734 PAM16Q9Y3D7 125 aa11.44□□□□□ -0.58
VPS28-206ENST00000526734 C14orf144Q96I85 54 aa11.43□□□□□ -0.58
VPS28-206ENST00000526734 C12orf57Q99622 126 aa11.43□□□□□ -0.58
VPS28-206ENST00000526734 XP32Q5T750 250 aa11.42□□□□□ -0.58
VPS28-206ENST00000526734 Q6ZQY7 126 aa11.42□□□□□ -0.58
VPS28-206ENST00000526734 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms