RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 INSL3P51460 131 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 VMA21Q3ZAQ7 101 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 ETDBQ3ZM63 59 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 NMSQ5H8A3 153 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 ATP5EP2Q5VTU8 51 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.56□□□□□ -2.16
CD44-223ENST00000526553 Q8IYB0 196 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 DEFB108BQ8NET1 73 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 TMEM254Q8TBM7 123 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 BORCS8Q96FH0 119 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 PCLOQ9Y6V0 5065 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 HERC2O95714 4834 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 STAB2Q8WWQ8 2551 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 ALMS1Q8TCU4 4167 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 STARD9Q9P2P6 4700 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 CSMD3Q7Z407 3707 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 TRAV27A0A087WT01 109 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 A0A087WX48 190 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGKV3D-7A0A0C4DH55 119 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGKV3OR2-268A0A0C4DH90 116 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 SMIM27A0A1W2PRY6 76 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 hADV29S1A0JD25 119 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGKV2-29A2NJV5 120 aaPredicted RBP1.55□□□□□ -2.16
CD44-223ENST00000526553 F2Z2F3 143 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGKCP01834 107 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 TCRAP04437 139 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 GYPBP06028 91 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGLC6P0CF74 106 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 LINC00305Q7Z4B0 112 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 CLECL1Q8IZS7 167 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 PRO1854Q9UHT4 67 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 SNURFQ9Y675 71 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 SERP1Q9Y6X1 66 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 MUC4Q99102 2169 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 FRAS1Q86XX4 4008 aa1.55□□□□□ -2.16
CD44-223ENST00000526553 IGKV2-40A0A087WW87 121 aaPredicted RBP1.54□□□□□ -2.16
CD44-223ENST00000526553 LOC107984640A0A0U1RRK4 108 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 LCE6AA0A183 80 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 A0A1B0GUT8 65 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 TMEM14DPA8MWL7 114 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 PPYP01298 95 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 IGKV2D-40P01614 121 aaPredicted RBP1.54□□□□□ -2.16
CD44-223ENST00000526553 LINC00694P0DN24 101 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 PDE6GP18545 87 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 GCHFRP30047 84 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 FXYD4P59646 89 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 PRB3Q04118 309 aaPredicted RBP1.54□□□□□ -2.16
CD44-223ENST00000526553 ZNF56Q15929 161 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 SPRNQ5BIV9 151 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 C1orf137Q5JT78 98 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 MIC13Q5XKP0 118 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 C2orf82Q6UX34 121 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 SERP2Q8N6R1 65 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 DPH3Q96FX2 82 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 CARD19Q96LW7 228 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 ZNF714Q96N38 554 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 AGPAT4-IT1Q9H0P7 198 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 FCGBPQ9Y6R7 5405 aaPredicted RBP1.54□□□□□ -2.16
CD44-223ENST00000526553 TNCP24821 2201 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 DNAH10Q8IVF4 4471 aa1.54□□□□□ -2.16
CD44-223ENST00000526553 IGHV1-58A0A0C4DH39 117 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 TRBV7-7A0A0K0K1E9 115 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 TRBV10-3A0A0K0K1G6 114 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 TCRBV4S1A1TA0A5B7 111 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 JMJD7-PLA2G4BH0Y9G9 81 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 H3BUX3 64 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 DNAL4O96015 105 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 IFI27P40305 119 aaPredicted RBP1.53□□□□□ -2.16
CD44-223ENST00000526553 ROMO1P60602 79 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 TDRG1Q3Y452 100 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 CFAP126Q5VTH2 177 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 PATE2Q6UY27 113 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 PHF5AQ7RTV0 110 aaKnown RBP1.53□□□□□ -2.16
CD44-223ENST00000526553 NDUFA11Q86Y39 141 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 PRR15Q8IV56 129 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 FAM19A2Q8N3H0 131 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 ARHGAP5-AS1Q96IT6 56 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 OTORQ9NRC9 128 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 KLK9Q9UKQ9 250 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 LINC00312Q9Y6C7 94 aa1.53□□□□□ -2.16
CD44-223ENST00000526553 TRBV30A0A0K0K1B3 111 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 HIGD1CA8MV81 97 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 H0YGX0 51 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 M0R3E3 92 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 MT-ATP8P03928 68 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 FOXA3P55318 350 aaPredicted RBP1.52□□□□□ -2.17
CD44-223ENST00000526553 QRFPP83859 136 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 WFDC2Q14508 124 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 SFTA2Q6UW10 78 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 TMEM14EPQ6UXP3 125 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 VMO1Q7Z5L0 202 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 BRK1Q8WUW1 75 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 LINC01600Q96MT4 127 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 RETNLBQ9BQ08 111 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 UBL5Q9BZL1 73 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 TIMM8BQ9Y5J9 83 aaPredicted RBP1.52□□□□□ -2.17
CD44-223ENST00000526553 V9GYV3 84 aa1.52□□□□□ -2.17
CD44-223ENST00000526553 IGKV3-7A0A075B6H7 116 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 TRBV25-1A0A075B6N4 114 aa1.51□□□□□ -2.17
CD44-223ENST00000526553 TRBV7-6A0A0J9YX20 115 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms