RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 AMELXQ99217 191 aa2.43□□□□□ -2.02
CD44-213ENST00000525209 USF3Q68DE3 2245 aa2.43□□□□□ -2.02
CD44-213ENST00000525209 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.43□□□□□ -2.02
CD44-213ENST00000525209 ABCA1O95477 2261 aa2.43□□□□□ -2.02
CD44-213ENST00000525209 IGKV2-28A0A075B6P5 120 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 IGKV3D-7A0A0C4DH55 119 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 IGKV3OR2-268A0A0C4DH90 116 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 A0A1B0GWA3 101 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 CEBPZOSA8MTT3 80 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 IGKV2D-28P01615 120 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 TFF3Q07654 80 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 COX7B2Q8TF08 81 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 ARL2-SNX15V9GYD0 113 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 TLN2Q9Y4G6 2542 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 FREM1Q5H8C1 2179 aa2.42□□□□□ -2.02
CD44-213ENST00000525209 ATRQ13535 2644 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 SONP18583 2426 aaKnown RBP2.41□□□□□ -2.02
CD44-213ENST00000525209 NBEAL1Q6ZS30 2694 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 COX8AP10176 69 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 C6orf201Q7Z4U5 140 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 KLK9Q9UKQ9 250 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 COL6A5A8TX70 2615 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 AKAP9Q99996 3911 aa2.41□□□□□ -2.02
CD44-213ENST00000525209 CADP27708 2225 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 H3BRN7 92 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 FXYD1O00168 92 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 ARMS2P0C7Q2 107 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 GCHFRP30047 84 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 CCL18P55774 89 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 LINC00315P59091 139 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 Q6JHZ5 121 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 WFDC10AQ9H1F0 79 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 PROK2Q9HC23 129 aa2.4□□□□□ -2.03
CD44-213ENST00000525209 NBDYA0A0U1RRE5 68 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 PRR9Q5T870 116 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 FAM74A4Q5TZK3 123 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 ZNF563Q8TA94 476 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 R4GMQ9 66 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 ROS1P08922 2347 aa2.39□□□□□ -2.03
CD44-213ENST00000525209 FBN1P35555 2871 aaKnown RBP2.38□□□□□ -2.03
CD44-213ENST00000525209 LEPROTL1O95214 131 aa2.38□□□□□ -2.03
CD44-213ENST00000525209 DNAL4O96015 105 aa2.38□□□□□ -2.03
CD44-213ENST00000525209 RPL37AP61513 92 aaKnown RBP2.38□□□□□ -2.03
CD44-213ENST00000525209 PRR15LQ9BU68 103 aa2.38□□□□□ -2.03
CD44-213ENST00000525209 IGKV2-40A0A087WW87 121 aaPredicted RBP2.37□□□□□ -2.03
CD44-213ENST00000525209 F8VRH5 84 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 GAS8-AS1O95177 125 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 IGKV2D-40P01614 121 aaPredicted RBP2.37□□□□□ -2.03
CD44-213ENST00000525209 ATP5EP2Q5VTU8 51 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 TMEM14CQ9P0S9 112 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 UBE2D4Q9Y2X8 147 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 LINC01558Q9Y6Z2 57 aa2.37□□□□□ -2.03
CD44-213ENST00000525209 NSD1Q96L73 2696 aaPredicted RBP2.36□□□□□ -2.03
CD44-213ENST00000525209 HRNRQ86YZ3 2850 aaPredicted RBP2.36□□□□□ -2.03
CD44-213ENST00000525209 A0A087WTM6 91 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 TRGV4A0A0C4DH28 118 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 DEFB108AA8MXU0 73 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 D6R8Y8 96 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 INE1O15225 51 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 C3orf79P0CE67 100 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 FXYD3Q14802 87 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 HCP5Q6MZN7 132 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 MUSTN1Q8IVN3 82 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 PPP1R1CQ8WVI7 109 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 HILPDAQ9Y5L2 63 aa2.36□□□□□ -2.03
CD44-213ENST00000525209 ZNF469Q96JG9 3925 aaPredicted RBP2.36□□□□□ -2.03
CD44-213ENST00000525209 WNK2Q9Y3S1 2297 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 MXRA5Q9NR99 2828 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 VPS13CQ709C8 3753 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 IGKV2-24A0A0C4DH68 120 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 TRBV6-5A0A0K0K1A5 114 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 PRB2P02812 416 aaPredicted RBP2.35□□□□□ -2.03
CD44-213ENST00000525209 LINC00322Q6ZN03 302 aaPredicted RBP2.35□□□□□ -2.03
CD44-213ENST00000525209 V9GYV3 84 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 STAB1Q9NY15 2570 aa2.35□□□□□ -2.03
CD44-213ENST00000525209 LOC110117498A0A087WWA1 95 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 IGKV2-29A2NJV5 120 aaPredicted RBP2.34□□□□□ -2.03
CD44-213ENST00000525209 M0R135 149 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 M0R2N4 97 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 PIN1P1O15428 100 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 IFI27P40305 119 aaPredicted RBP2.34□□□□□ -2.03
CD44-213ENST00000525209 BAGE2Q86Y30 109 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 C5orf56Q8N8D9 126 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 LINC00304Q8N9R0 145 aa2.34□□□□□ -2.03
CD44-213ENST00000525209 LYNX1G3V0Z9 82 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 M0R3E3 92 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 UQCR11O14957 56 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 LYNX1P0DP58 116 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 COA5Q86WW8 74 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 WFDC6Q9BQY6 131 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 TXNDC17Q9BRA2 123 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 ZANQ9Y493 2812 aa2.33□□□□□ -2.04
CD44-213ENST00000525209 TGP01266 2768 aa2.32□□□□□ -2.04
CD44-213ENST00000525209 A0A087WVE0 104 aa2.32□□□□□ -2.04
CD44-213ENST00000525209 TRBV7-4A0A0J9YYF1 115 aa2.32□□□□□ -2.04
CD44-213ENST00000525209 ZNF625Q96I27 306 aaPredicted RBP2.32□□□□□ -2.04
CD44-213ENST00000525209 PLAC8Q9NZF1 115 aa2.32□□□□□ -2.04
CD44-213ENST00000525209 MRPL33O75394 65 aaKnown RBP2.31□□□□□ -2.04
CD44-213ENST00000525209 MGPP08493 103 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms