RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 HIST3H2BBQ8N257 126 aa12.15□□□□□ -0.46
VPS28-203ENST00000524521 PPDPFQ9H3Y8 114 aa12.15□□□□□ -0.46
VPS28-203ENST00000524521 TRAV23DV6A0A075B6W5 121 aa12.13□□□□□ -0.47
VPS28-203ENST00000524521 SNRPEP62304 92 aaKnown RBP12.12□□□□□ -0.47
VPS28-203ENST00000524521 ATOH7Q8N100 152 aa12.12□□□□□ -0.47
VPS28-203ENST00000524521 SPANXCQ9NY87 97 aa12.12□□□□□ -0.47
VPS28-203ENST00000524521 LPAP08519 4548 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 ERC2-IT1O76042 136 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 GAGE2AQ6NT46 116 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 Q6ZRX8 168 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 HIST1H2BLQ99880 126 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 Q9BRP9 147 aa12.11□□□□□ -0.47
VPS28-203ENST00000524521 ZNF73O43830 326 aaPredicted RBP12.1□□□□□ -0.47
VPS28-203ENST00000524521 ANKRD39Q53RE8 183 aa12.1□□□□□ -0.47
VPS28-203ENST00000524521 OR13C6PQ8NH95 151 aa12.1□□□□□ -0.47
VPS28-203ENST00000524521 SCGB1D4Q6XE38 83 aa12.09□□□□□ -0.47
VPS28-203ENST00000524521 RETNLBQ9BQ08 111 aa12.09□□□□□ -0.47
VPS28-203ENST00000524521 AKR1D1P51857 326 aa12.08□□□□□ -0.48
VPS28-203ENST00000524521 JOSD1Q15040 202 aaPredicted RBP12.08□□□□□ -0.48
VPS28-203ENST00000524521 CBY1Q9Y3M2 126 aa12.08□□□□□ -0.48
VPS28-203ENST00000524521 C5orf52A6NGY3 159 aa12.07□□□□□ -0.48
VPS28-203ENST00000524521 HINT1P49773 126 aaPredicted RBP12.06□□□□□ -0.48
VPS28-203ENST00000524521 CTAG1AP78358 180 aa12.06□□□□□ -0.48
VPS28-203ENST00000524521 LINC00483Q53H64 154 aa12.06□□□□□ -0.48
VPS28-203ENST00000524521 C4orf48Q5BLP8 95 aa12.06□□□□□ -0.48
VPS28-203ENST00000524521 SPAG11AQ6PDA7 123 aa12.05□□□□□ -0.48
VPS28-203ENST00000524521 LINC00518Q8N0U6 118 aa12.04□□□□□ -0.48
VPS28-203ENST00000524521 Q8NBF4 154 aa12.04□□□□□ -0.48
VPS28-203ENST00000524521 SPANXDQ9BXN6 97 aa12.03□□□□□ -0.48
VPS28-203ENST00000524521 PCP2Q8IVA1 136 aa12.02□□□□□ -0.49
VPS28-203ENST00000524521 IGLV9-49A0A0B4J1Y8 123 aa12.01□□□□□ -0.49
VPS28-203ENST00000524521 TMA7Q9Y2S6 64 aaKnown RBP12□□□□□ -0.49
VPS28-203ENST00000524521 RNF213Q63HN8 5207 aa12□□□□□ -0.49
VPS28-203ENST00000524521 MOBPQ13875 183 aa11.99□□□□□ -0.49
VPS28-203ENST00000524521 COPS9Q8WXC6 57 aa11.99□□□□□ -0.49
VPS28-203ENST00000524521 IFITM1P13164 125 aa11.98□□□□□ -0.49
VPS28-203ENST00000524521 ST20-AS1Q8NBB2 130 aa11.98□□□□□ -0.49
VPS28-203ENST00000524521 IGLV7-46A0A075B6I9 117 aa11.96□□□□□ -0.49
VPS28-203ENST00000524521 Q6ZVH6 145 aa11.96□□□□□ -0.49
VPS28-203ENST00000524521 SSBP3-AS1Q7Z2R9 100 aa11.96□□□□□ -0.49
VPS28-203ENST00000524521 MUSTN1Q8IVN3 82 aa11.96□□□□□ -0.49
VPS28-203ENST00000524521 SCGB1D1O95968 90 aa11.95□□□□□ -0.5
VPS28-203ENST00000524521 SPINK1P00995 79 aa11.94□□□□□ -0.5
VPS28-203ENST00000524521 COX7BP24311 80 aa11.94□□□□□ -0.5
VPS28-203ENST00000524521 C6orf99Q4VX62 202 aa11.94□□□□□ -0.5
VPS28-203ENST00000524521 DHRS4-AS1Q9P1J3 65 aa11.94□□□□□ -0.5
VPS28-203ENST00000524521 HSBP1L1C9JCN9 74 aa11.93□□□□□ -0.5
VPS28-203ENST00000524521 A6NDN8 102 aa11.92□□□□□ -0.5
VPS28-203ENST00000524521 C9orf153Q5TBE3 101 aa11.92□□□□□ -0.5
VPS28-203ENST00000524521 ELOF1P60002 83 aaKnown RBP11.91□□□□□ -0.5
VPS28-203ENST00000524521 CDIP1Q9H305 208 aa11.89□□□□□ -0.51
VPS28-203ENST00000524521 TPRXLQ17RH7 258 aa11.88□□□□□ -0.51
VPS28-203ENST00000524521 TRBV7-6A0A0J9YX20 115 aa11.86□□□□□ -0.51
VPS28-203ENST00000524521 SPRR1BP22528 89 aa11.86□□□□□ -0.51
VPS28-203ENST00000524521 FP248Q71RG6 208 aaPredicted RBP11.86□□□□□ -0.51
VPS28-203ENST00000524521 TRAV13-2A0A0B4J235 113 aa11.85□□□□□ -0.51
VPS28-203ENST00000524521 SLC25A34Q6PIV7 304 aa11.85□□□□□ -0.51
VPS28-203ENST00000524521 TAL2Q16559 108 aa11.84□□□□□ -0.51
VPS28-203ENST00000524521 DEFB105AQ8NG35 78 aa11.84□□□□□ -0.51
VPS28-203ENST00000524521 A0A1B0GWB2 263 aa11.83□□□□□ -0.52
VPS28-203ENST00000524521 RPS29P62273 56 aaKnown RBP11.83□□□□□ -0.52
VPS28-203ENST00000524521 LAMTOR3Q9UHA4 124 aa11.82□□□□□ -0.52
VPS28-203ENST00000524521 Q8N377 158 aa11.81□□□□□ -0.52
VPS28-203ENST00000524521 SMIM11BQ8TCY0 68 aa11.8□□□□□ -0.52
VPS28-203ENST00000524521 SLC25A20O43772 301 aa11.79□□□□□ -0.52
VPS28-203ENST00000524521 TEX49A0A1B0GTD5 131 aa11.78□□□□□ -0.52
VPS28-203ENST00000524521 A4D1N5 150 aa11.77□□□□□ -0.53
VPS28-203ENST00000524521 Q1RN00 199 aa11.77□□□□□ -0.53
VPS28-203ENST00000524521 VAMP8Q9BV40 100 aa11.76□□□□□ -0.53
VPS28-203ENST00000524521 HRCT1Q6UXD1 115 aa11.75□□□□□ -0.53
VPS28-203ENST00000524521 KRTAP13-3Q3SY46 172 aa11.74□□□□□ -0.53
VPS28-203ENST00000524521 PAM16Q9Y3D7 125 aa11.74□□□□□ -0.53
VPS28-203ENST00000524521 COX8AP10176 69 aa11.73□□□□□ -0.53
VPS28-203ENST00000524521 SPATA45Q537H7 98 aa11.73□□□□□ -0.53
VPS28-203ENST00000524521 HIST1H4GQ99525 98 aa11.73□□□□□ -0.53
VPS28-203ENST00000524521 NHP2Q9NX24 153 aaKnown RBP11.73□□□□□ -0.53
VPS28-203ENST00000524521 VAMP3Q15836 100 aa11.72□□□□□ -0.53
VPS28-203ENST00000524521 PYY3Q5JQD4 70 aa11.72□□□□□ -0.53
VPS28-203ENST00000524521 LINC01547P58512 204 aaPredicted RBP11.71□□□□□ -0.53
VPS28-203ENST00000524521 IGLV5-48A0A075B6I7 105 aa11.7□□□□□ -0.54
VPS28-203ENST00000524521 SMIM29Q86T20 159 aa11.7□□□□□ -0.54
VPS28-203ENST00000524521 PRO1933Q9H354 126 aa11.7□□□□□ -0.54
VPS28-203ENST00000524521 C12orf57Q99622 126 aa11.69□□□□□ -0.54
VPS28-203ENST00000524521 DLEU1O43261 78 aa11.68□□□□□ -0.54
VPS28-203ENST00000524521 C14orf144Q96I85 54 aa11.68□□□□□ -0.54
VPS28-203ENST00000524521 LIMD2Q9BT23 127 aa11.67□□□□□ -0.54
VPS28-203ENST00000524521 MUC2Q02817 5179 aa11.66□□□□□ -0.54
VPS28-203ENST00000524521 LINC00575Q6W349 94 aa11.66□□□□□ -0.54
VPS28-203ENST00000524521 A0A0U1RQV1 116 aa11.65□□□□□ -0.54
VPS28-203ENST00000524521 CD164Q04900 197 aa11.64□□□□□ -0.55
VPS28-203ENST00000524521 H7C2G1 150 aa11.63□□□□□ -0.55
VPS28-203ENST00000524521 hADV29S1A0JD25 119 aa11.62□□□□□ -0.55
VPS28-203ENST00000524521 A0A0G2JQZ4 141 aa11.61□□□□□ -0.55
VPS28-203ENST00000524521 Q6ZQY7 126 aa11.59□□□□□ -0.55
VPS28-203ENST00000524521 HIGD1BQ9P298 99 aa11.59□□□□□ -0.55
VPS28-203ENST00000524521 BVES-AS1Q5T3Y7 98 aa11.58□□□□□ -0.56
VPS28-203ENST00000524521 MUC17Q685J3 4493 aa11.58□□□□□ -0.56
VPS28-203ENST00000524521 CFC1BP0CG36 223 aa11.57□□□□□ -0.56
VPS28-203ENST00000524521 CFC1P0CG37 223 aa11.57□□□□□ -0.56
VPS28-203ENST00000524521 F8WEM9 126 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms