RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 NPC2P61916 151 aa17.06■□□□□ 0.32
SYNPO-203ENST00000518872 ERC2-IT1O76042 136 aa17.05■□□□□ 0.32
SYNPO-203ENST00000518872 LINC00308Q8TCZ7 52 aa17.04■□□□□ 0.32
SYNPO-203ENST00000518872 PPDPFQ9H3Y8 114 aa17.04■□□□□ 0.32
SYNPO-203ENST00000518872 SPANXCQ9NY87 97 aa17.04■□□□□ 0.32
SYNPO-203ENST00000518872 CBY1Q9Y3M2 126 aa17.04■□□□□ 0.32
SYNPO-203ENST00000518872 ZNF815PA8K554 130 aa17.02■□□□□ 0.32
SYNPO-203ENST00000518872 ZNF73O43830 326 aaPredicted RBP17.02■□□□□ 0.32
SYNPO-203ENST00000518872 JOSD1Q15040 202 aaPredicted RBP17.02■□□□□ 0.32
SYNPO-203ENST00000518872 TPRXLQ17RH7 258 aa17.01■□□□□ 0.31
SYNPO-203ENST00000518872 GAGE2AQ6NT46 116 aa17.01■□□□□ 0.31
SYNPO-203ENST00000518872 Q8NBF4 154 aa17■□□□□ 0.31
SYNPO-203ENST00000518872 KRTDAPP60985 99 aa16.99■□□□□ 0.31
SYNPO-203ENST00000518872 C4orf48Q5BLP8 95 aa16.99■□□□□ 0.31
SYNPO-203ENST00000518872 IGLV7-46A0A075B6I9 117 aa16.97■□□□□ 0.31
SYNPO-203ENST00000518872 TTTY13Q9BZ97 58 aa16.96■□□□□ 0.31
SYNPO-203ENST00000518872 C20orf202A1L168 122 aa16.95■□□□□ 0.3
SYNPO-203ENST00000518872 C5orf52A6NGY3 159 aa16.95■□□□□ 0.3
SYNPO-203ENST00000518872 SPINK1P00995 79 aa16.94■□□□□ 0.3
SYNPO-203ENST00000518872 SSBP3-AS1Q7Z2R9 100 aa16.94■□□□□ 0.3
SYNPO-203ENST00000518872 SPANXDQ9BXN6 97 aa16.93■□□□□ 0.3
SYNPO-203ENST00000518872 HINT1P49773 126 aaPredicted RBP16.92■□□□□ 0.3
SYNPO-203ENST00000518872 FP248Q71RG6 208 aaPredicted RBP16.92■□□□□ 0.3
SYNPO-203ENST00000518872 AKR1D1P51857 326 aa16.91■□□□□ 0.3
SYNPO-203ENST00000518872 LINC00518Q8N0U6 118 aa16.9■□□□□ 0.3
SYNPO-203ENST00000518872 RPS29P62273 56 aaKnown RBP16.89■□□□□ 0.29
SYNPO-203ENST00000518872 MOBPQ13875 183 aa16.89■□□□□ 0.29
SYNPO-203ENST00000518872 ANKRD39Q53RE8 183 aa16.88■□□□□ 0.29
SYNPO-203ENST00000518872 OR13C6PQ8NH95 151 aa16.88■□□□□ 0.29
SYNPO-203ENST00000518872 MUC2Q02817 5179 aa16.88■□□□□ 0.29
SYNPO-203ENST00000518872 IGLV9-49A0A0B4J1Y8 123 aa16.87■□□□□ 0.29
SYNPO-203ENST00000518872 CDIP1Q9H305 208 aa16.86■□□□□ 0.29
SYNPO-203ENST00000518872 SCGB1D4Q6XE38 83 aa16.85■□□□□ 0.29
SYNPO-203ENST00000518872 COPS9Q8WXC6 57 aa16.83■□□□□ 0.28
SYNPO-203ENST00000518872 IFITM1P13164 125 aa16.82■□□□□ 0.28
SYNPO-203ENST00000518872 Q6ZVH6 145 aa16.82■□□□□ 0.28
SYNPO-203ENST00000518872 DHRS4-AS1Q9P1J3 65 aa16.82■□□□□ 0.28
SYNPO-203ENST00000518872 ST20-AS1Q8NBB2 130 aa16.81■□□□□ 0.28
SYNPO-203ENST00000518872 SPRR1BP22528 89 aa16.8■□□□□ 0.28
SYNPO-203ENST00000518872 ATOH7Q8N100 152 aa16.8■□□□□ 0.28
SYNPO-203ENST00000518872 ELOF1P60002 83 aaKnown RBP16.79■□□□□ 0.28
SYNPO-203ENST00000518872 SNRPEP62304 92 aaKnown RBP16.79■□□□□ 0.28
SYNPO-203ENST00000518872 C6orf99Q4VX62 202 aa16.76■□□□□ 0.27
SYNPO-203ENST00000518872 PCP2Q8IVA1 136 aa16.76■□□□□ 0.27
SYNPO-203ENST00000518872 Q8N377 158 aa16.75■□□□□ 0.27
SYNPO-203ENST00000518872 TRBV7-6A0A0J9YX20 115 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 A0A0U1RQV1 116 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 S100A1P23297 94 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 COX7BP24311 80 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 C9orf153Q5TBE3 101 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 HIST3H2BBQ8N257 126 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 MUC17Q685J3 4493 aa16.74■□□□□ 0.27
SYNPO-203ENST00000518872 KRTAP13-3Q3SY46 172 aa16.73■□□□□ 0.27
SYNPO-203ENST00000518872 SLC25A34Q6PIV7 304 aa16.73■□□□□ 0.27
SYNPO-203ENST00000518872 HIST1H2BLQ99880 126 aa16.71■□□□□ 0.27
SYNPO-203ENST00000518872 SLC25A20O43772 301 aa16.7■□□□□ 0.26
SYNPO-203ENST00000518872 MUSTN1Q8IVN3 82 aa16.69■□□□□ 0.26
SYNPO-203ENST00000518872 S100A2P29034 98 aa16.67■□□□□ 0.26
SYNPO-203ENST00000518872 A0A1B0GWB2 263 aa16.65■□□□□ 0.26
SYNPO-203ENST00000518872 LAMTOR3Q9UHA4 124 aa16.64■□□□□ 0.25
SYNPO-203ENST00000518872 A6NDN8 102 aa16.62■□□□□ 0.25
SYNPO-203ENST00000518872 TRAV13-2A0A0B4J235 113 aa16.6■□□□□ 0.25
SYNPO-203ENST00000518872 TEX49A0A1B0GTD5 131 aa16.58■□□□□ 0.24
SYNPO-203ENST00000518872 A4D1N5 150 aa16.58■□□□□ 0.24
SYNPO-203ENST00000518872 HSBP1L1C9JCN9 74 aa16.58■□□□□ 0.24
SYNPO-203ENST00000518872 S100A6P06703 90 aa16.57■□□□□ 0.24
SYNPO-203ENST00000518872 TAL2Q16559 108 aa16.57■□□□□ 0.24
SYNPO-203ENST00000518872 IGLV5-48A0A075B6I7 105 aa16.55■□□□□ 0.24
SYNPO-203ENST00000518872 LIMD2Q9BT23 127 aa16.54■□□□□ 0.24
SYNPO-203ENST00000518872 ASB16-AS1Q495Z4 193 aa16.53■□□□□ 0.24
SYNPO-203ENST00000518872 LINC01547P58512 204 aaPredicted RBP16.52■□□□□ 0.24
SYNPO-203ENST00000518872 SMIM11BQ8TCY0 68 aa16.52■□□□□ 0.24
SYNPO-203ENST00000518872 CD164Q04900 197 aa16.51■□□□□ 0.23
SYNPO-203ENST00000518872 DEFB105AQ8NG35 78 aa16.51■□□□□ 0.23
SYNPO-203ENST00000518872 Q1RN00 199 aa16.5■□□□□ 0.23
SYNPO-203ENST00000518872 SMIM29Q86T20 159 aa16.5■□□□□ 0.23
SYNPO-203ENST00000518872 NHP2Q9NX24 153 aaKnown RBP16.5■□□□□ 0.23
SYNPO-203ENST00000518872 FAT4Q6V0I7 4981 aa16.49■□□□□ 0.23
SYNPO-203ENST00000518872 PRO1933Q9H354 126 aa16.49■□□□□ 0.23
SYNPO-203ENST00000518872 LCE2AQ5TA79 106 aaPredicted RBP16.45■□□□□ 0.22
SYNPO-203ENST00000518872 SEC61BP60468 96 aaKnown RBP16.43■□□□□ 0.22
SYNPO-203ENST00000518872 HRCT1Q6UXD1 115 aa16.43■□□□□ 0.22
SYNPO-203ENST00000518872 XP32Q5T750 250 aa16.42■□□□□ 0.22
SYNPO-203ENST00000518872 Q5XG85 94 aa16.41■□□□□ 0.22
SYNPO-203ENST00000518872 VAMP3Q15836 100 aa16.4■□□□□ 0.22
SYNPO-203ENST00000518872 SCGB1D1O95968 90 aa16.39■□□□□ 0.21
SYNPO-203ENST00000518872 H7C2G1 150 aa16.37■□□□□ 0.21
SYNPO-203ENST00000518872 COX8AP10176 69 aa16.36■□□□□ 0.21
SYNPO-203ENST00000518872 LINC00575Q6W349 94 aa16.36■□□□□ 0.21
SYNPO-203ENST00000518872 DLEU1O43261 78 aa16.34■□□□□ 0.21
SYNPO-203ENST00000518872 HIST1H4GQ99525 98 aa16.3■□□□□ 0.2
SYNPO-203ENST00000518872 hADV29S1A0JD25 119 aa16.28■□□□□ 0.2
SYNPO-203ENST00000518872 KRTAP4-1Q9BYQ7 146 aa16.28■□□□□ 0.2
SYNPO-203ENST00000518872 Q6ZQY7 126 aa16.26■□□□□ 0.19
SYNPO-203ENST00000518872 BVES-AS1Q5T3Y7 98 aa16.24■□□□□ 0.19
SYNPO-203ENST00000518872 A0A0G2JQZ4 141 aa16.23■□□□□ 0.19
SYNPO-203ENST00000518872 F8WEM9 126 aa16.23■□□□□ 0.19
SYNPO-203ENST00000518872 C1orf195Q5TG92 126 aa16.22■□□□□ 0.19
SYNPO-203ENST00000518872 C12orf57Q99622 126 aa16.22■□□□□ 0.19
SYNPO-203ENST00000518872 HIGD1BQ9P298 99 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms