RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 C21orf62-AS1Q17RA5 79 aa6.19□□□□□ -1.42
LIMCH1-221ENST00000515785 LINC01549A6NIU2 74 aa6.18□□□□□ -1.42
LIMCH1-221ENST00000515785 FAM19A1Q7Z5A9 133 aa6.18□□□□□ -1.42
LIMCH1-221ENST00000515785 PLEKHB2Q96CS7 222 aa6.18□□□□□ -1.42
LIMCH1-221ENST00000515785 ZNF22P17026 224 aaPredicted RBP6.17□□□□□ -1.42
LIMCH1-221ENST00000515785 PCP2Q8IVA1 136 aa6.17□□□□□ -1.42
LIMCH1-221ENST00000515785 LINC01561Q8N1V8 128 aa6.17□□□□□ -1.42
LIMCH1-221ENST00000515785 NKAPP1Q8N9T2 125 aa6.17□□□□□ -1.42
LIMCH1-221ENST00000515785 VCX2Q9H322 139 aa6.17□□□□□ -1.42
LIMCH1-221ENST00000515785 NPSP0C0P6 89 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 DDTP30046 118 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 TSPEAR-AS2P59090 65 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 C2orf91Q6ZV80 131 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 Q8NBF4 154 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 MIEN1Q9BRT3 115 aa6.16□□□□□ -1.42
LIMCH1-221ENST00000515785 TMEM238C9JI98 176 aa6.15□□□□□ -1.42
LIMCH1-221ENST00000515785 COX8AP10176 69 aa6.15□□□□□ -1.42
LIMCH1-221ENST00000515785 FAM19A3Q7Z5A8 133 aa6.15□□□□□ -1.42
LIMCH1-221ENST00000515785 Q8IZM0 81 aa6.15□□□□□ -1.42
LIMCH1-221ENST00000515785 TMEM223A0PJW6 202 aa6.14□□□□□ -1.43
LIMCH1-221ENST00000515785 TSTD3H0UI37 97 aa6.14□□□□□ -1.43
LIMCH1-221ENST00000515785 PLNP26678 52 aa6.14□□□□□ -1.43
LIMCH1-221ENST00000515785 BOD1L2Q8IYS8 172 aa6.14□□□□□ -1.43
LIMCH1-221ENST00000515785 IGLV8-61A0A075B6I0 122 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 IGLV5-37A0A075B6J1 123 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 IGLV5-45A0A087WSX0 123 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 TINCRA0A1B0GVN0 87 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 E9PLD3 99 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 HIGD2AQ9BW72 106 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 UQCR10Q9UDW1 63 aa6.13□□□□□ -1.43
LIMCH1-221ENST00000515785 NMUP48645 174 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 PCOTHQ58A44 107 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 TMEM170BQ5T4T1 132 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 C2orf88Q9BSF0 95 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 TMEM126AQ9H061 195 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 CDKN2A-AS1Q9UH64 79 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
LIMCH1-221ENST00000515785 HSBP1L1C9JCN9 74 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 SPINK1P00995 79 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 SPINK8P0C7L1 97 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 PAPPA-AS1Q5QFB9 102 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 SLC25A34Q6PIV7 304 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 SPRR4Q96PI1 79 aa6.11□□□□□ -1.43
LIMCH1-221ENST00000515785 SSPOA2VEC9 5147 aa6.1□□□□□ -1.43
LIMCH1-221ENST00000515785 DLEU1O43261 78 aa6.1□□□□□ -1.43
LIMCH1-221ENST00000515785 M0R378 163 aa6.09□□□□□ -1.43
LIMCH1-221ENST00000515785 LEPROTO15243 131 aa6.09□□□□□ -1.43
LIMCH1-221ENST00000515785 SNHG12Q9BXW3 62 aa6.09□□□□□ -1.43
LIMCH1-221ENST00000515785 USH2AO75445 5202 aa6.08□□□□□ -1.44
LIMCH1-221ENST00000515785 IGLV5-39A0A0G2JS06 123 aa6.08□□□□□ -1.44
LIMCH1-221ENST00000515785 SMIM1B2RUZ4 78 aa6.08□□□□□ -1.44
LIMCH1-221ENST00000515785 MYMXA0A1B0GTQ4 84 aa6.07□□□□□ -1.44
LIMCH1-221ENST00000515785 J3QQQ9 107 aa6.07□□□□□ -1.44
LIMCH1-221ENST00000515785 HERVK_113P63121 156 aa6.07□□□□□ -1.44
LIMCH1-221ENST00000515785 Q8N377 158 aa6.07□□□□□ -1.44
LIMCH1-221ENST00000515785 GEMIN7Q9H840 131 aaKnown RBP6.07□□□□□ -1.44
LIMCH1-221ENST00000515785 CXCL5P42830 114 aa6.06□□□□□ -1.44
LIMCH1-221ENST00000515785 COX7B2Q8TF08 81 aa6.06□□□□□ -1.44
LIMCH1-221ENST00000515785 ZNF815PA8K554 130 aa6.05□□□□□ -1.44
LIMCH1-221ENST00000515785 SLC25A20O43772 301 aa6.05□□□□□ -1.44
LIMCH1-221ENST00000515785 HINT1P49773 126 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-221ENST00000515785 HERVK_113P61574 105 aa6.05□□□□□ -1.44
LIMCH1-221ENST00000515785 HIGD1BQ9P298 99 aa6.05□□□□□ -1.44
LIMCH1-221ENST00000515785 VPREB1P12018 145 aa6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 PFN2P35080 140 aa6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 BVES-AS1Q5T3Y7 98 aa6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 COX6B2Q6YFQ2 88 aa6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 LITAFQ99732 161 aa6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 ZNF706Q9Y5V0 76 aaPredicted RBP6.04□□□□□ -1.44
LIMCH1-221ENST00000515785 FCGBPQ9Y6R7 5405 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-221ENST00000515785 A0A0J9YXY3 114 aa6.03□□□□□ -1.44
LIMCH1-221ENST00000515785 SEC11AP67812 179 aa6.03□□□□□ -1.44
LIMCH1-221ENST00000515785 FLGP20930 4061 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-221ENST00000515785 IGLV9-49A0A0B4J1Y8 123 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 C9orf92A6NGG3 77 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 H3BRM9 83 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 M0R143 59 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 LGALS3P17931 250 aaKnown RBP6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 ADAMTSL4-AS1Q5T5F5 129 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 Q8NDZ9 215 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 SMCR5Q8TEV8 140 aa6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 ZNF625Q96I27 306 aaPredicted RBP6.02□□□□□ -1.45
LIMCH1-221ENST00000515785 SYNE2Q8WXH0 6885 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 FXYD2P54710 66 aa6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 RPL24P83731 157 aaKnown RBP6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 MOBPQ13875 183 aa6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 BATFQ16520 125 aa6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 Q6ZVH6 145 aa6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 SND1-IT1Q9HBX3 110 aa6.01□□□□□ -1.45
LIMCH1-221ENST00000515785 KRTAP4-16G5E9R7 235 aaPredicted RBP6□□□□□ -1.45
LIMCH1-221ENST00000515785 HSD52Q0P140 79 aa6□□□□□ -1.45
LIMCH1-221ENST00000515785 GAGE2AQ6NT46 116 aa6□□□□□ -1.45
LIMCH1-221ENST00000515785 C9orf118A6NHY6 69 aa5.99□□□□□ -1.45
LIMCH1-221ENST00000515785 SPANXB1Q9NS25 103 aaPredicted RBP5.99□□□□□ -1.45
LIMCH1-221ENST00000515785 RPS29P62273 56 aaKnown RBP5.98□□□□□ -1.45
LIMCH1-221ENST00000515785 CEND1Q8N111 149 aa5.98□□□□□ -1.45
LIMCH1-221ENST00000515785 TAL2Q16559 108 aa5.97□□□□□ -1.45
LIMCH1-221ENST00000515785 SOSTDC1Q6X4U4 206 aa5.97□□□□□ -1.45
LIMCH1-221ENST00000515785 SCGB1D4Q6XE38 83 aa5.97□□□□□ -1.45
LIMCH1-221ENST00000515785 SSBP3-AS1Q7Z2R9 100 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms