RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 Q6ZQT0 140 aa8.59□□□□□ -1.03
USP53-209ENST00000514665 CSNK1G2-AS1Q8NCQ2 148 aa8.59□□□□□ -1.03
USP53-209ENST00000514665 PSPHP1O15172 72 aa8.59□□□□□ -1.03
USP53-209ENST00000514665 ZNF575Q86XF7 245 aa8.59□□□□□ -1.03
USP53-209ENST00000514665 GIG44P09565 113 aaPredicted RBP8.59□□□□□ -1.04
USP53-209ENST00000514665 ELOF1P60002 83 aaKnown RBP8.58□□□□□ -1.04
USP53-209ENST00000514665 SMIM29Q86T20 159 aa8.58□□□□□ -1.04
USP53-209ENST00000514665 KALRNO60229 2985 aa8.58□□□□□ -1.04
USP53-209ENST00000514665 HCG22E2RYF7 251 aa8.58□□□□□ -1.04
USP53-209ENST00000514665 H0Y9P7 68 aa8.57□□□□□ -1.04
USP53-209ENST00000514665 IGLV5-52A0A0A0MRZ9 124 aa8.56□□□□□ -1.04
USP53-209ENST00000514665 KRTAP24-1Q3LI83 254 aa8.56□□□□□ -1.04
USP53-209ENST00000514665 TRBV7-6A0A0J9YX20 115 aa8.56□□□□□ -1.04
USP53-209ENST00000514665 ST20-AS1Q8NBB2 130 aa8.56□□□□□ -1.04
USP53-209ENST00000514665 RETNLBQ9BQ08 111 aa8.55□□□□□ -1.04
USP53-209ENST00000514665 TACC2O95359 2948 aa8.54□□□□□ -1.04
USP53-209ENST00000514665 Q6ZRP5 223 aa8.54□□□□□ -1.04
USP53-209ENST00000514665 PRR15LQ9BU68 103 aa8.54□□□□□ -1.04
USP53-209ENST00000514665 C19orf73Q9NVV2 129 aa8.54□□□□□ -1.04
USP53-209ENST00000514665 FLNCQ14315 2725 aa8.54□□□□□ -1.04
USP53-209ENST00000514665 H3BNG1 76 aa8.53□□□□□ -1.04
USP53-209ENST00000514665 TM2D3Q9BRN9 247 aa8.53□□□□□ -1.04
USP53-209ENST00000514665 VPREB1P12018 145 aa8.53□□□□□ -1.04
USP53-209ENST00000514665 C1orf195Q5TG92 126 aa8.53□□□□□ -1.04
USP53-209ENST00000514665 Q6ZRX8 168 aa8.52□□□□□ -1.05
USP53-209ENST00000514665 LINC00588Q9Y4M8 146 aa8.52□□□□□ -1.05
USP53-209ENST00000514665 LOC110117498A0A087WWA1 95 aa8.51□□□□□ -1.05
USP53-209ENST00000514665 Q8NBF4 154 aa8.51□□□□□ -1.05
USP53-209ENST00000514665 IGLV6-57P01721 117 aa8.51□□□□□ -1.05
USP53-209ENST00000514665 IGSF10Q6WRI0 2623 aa8.5□□□□□ -1.05
USP53-209ENST00000514665 NHLRC4P0CG21 123 aaPredicted RBP8.5□□□□□ -1.05
USP53-209ENST00000514665 PHF5AQ7RTV0 110 aaKnown RBP8.5□□□□□ -1.05
USP53-209ENST00000514665 LINC00476Q8WZB0 136 aa8.5□□□□□ -1.05
USP53-209ENST00000514665 MDFIQ99750 246 aa8.49□□□□□ -1.05
USP53-209ENST00000514665 CHTF8P0CG12 524 aa8.49□□□□□ -1.05
USP53-209ENST00000514665 C1orf64Q8NEQ6 169 aa8.49□□□□□ -1.05
USP53-209ENST00000514665 FAM168BA1KXE4 195 aa8.49□□□□□ -1.05
USP53-209ENST00000514665 PMAIP1Q13794 54 aa8.49□□□□□ -1.05
USP53-209ENST00000514665 C1orf134Q5TEV5 83 aa8.48□□□□□ -1.05
USP53-209ENST00000514665 GVQW2A0A096LPI5 108 aaPredicted RBP8.48□□□□□ -1.05
USP53-209ENST00000514665 C9orf129Q5T035 196 aaKnown RBP8.47□□□□□ -1.05
USP53-209ENST00000514665 C4orf26Q17RF5 130 aa8.46□□□□□ -1.05
USP53-209ENST00000514665 SERTAD4-AS1Q5TG53 156 aa8.46□□□□□ -1.05
USP53-209ENST00000514665 ITPR1Q14643 2758 aa8.46□□□□□ -1.05
USP53-209ENST00000514665 MOBPQ13875 183 aa8.46□□□□□ -1.06
USP53-209ENST00000514665 KRTAP10-3P60369 221 aa8.45□□□□□ -1.06
USP53-209ENST00000514665 CUBNO60494 3623 aa8.44□□□□□ -1.06
USP53-209ENST00000514665 hDV103S1A0JD37 113 aa8.44□□□□□ -1.06
USP53-209ENST00000514665 BCE1O60756 84 aa8.44□□□□□ -1.06
USP53-209ENST00000514665 RPL37AP61513 92 aaKnown RBP8.44□□□□□ -1.06
USP53-209ENST00000514665 PRR34Q9NV39 138 aa8.44□□□□□ -1.06
USP53-209ENST00000514665 EPM2AB3EWF7 344 aa8.43□□□□□ -1.06
USP53-209ENST00000514665 SPINK1P00995 79 aa8.43□□□□□ -1.06
USP53-209ENST00000514665 RPS28P62857 69 aaKnown RBP8.43□□□□□ -1.06
USP53-209ENST00000514665 LINC00528Q8N1L1 170 aa8.43□□□□□ -1.06
USP53-209ENST00000514665 DNAH10OSP0CZ25 163 aa8.42□□□□□ -1.06
USP53-209ENST00000514665 NSD1Q96L73 2696 aaPredicted RBP8.42□□□□□ -1.06
USP53-209ENST00000514665 ASH1LQ9NR48 2969 aaKnown RBP8.41□□□□□ -1.06
USP53-209ENST00000514665 RELNP78509 3460 aa8.41□□□□□ -1.06
USP53-209ENST00000514665 LINC00612Q8N6U2 182 aa8.4□□□□□ -1.06
USP53-209ENST00000514665 C16orf90A8MZG2 172 aa8.4□□□□□ -1.06
USP53-209ENST00000514665 K7ERS5 55 aa8.4□□□□□ -1.06
USP53-209ENST00000514665 TRBV7-4A0A0J9YYF1 115 aa8.39□□□□□ -1.07
USP53-209ENST00000514665 C15orf56Q8N910 161 aa8.39□□□□□ -1.07
USP53-209ENST00000514665 KRTAP1-3Q8IUG1 177 aa8.39□□□□□ -1.07
USP53-209ENST00000514665 A0A1B0GW54 56 aa8.39□□□□□ -1.07
USP53-209ENST00000514665 KRTAP10-11P60412 298 aa8.38□□□□□ -1.07
USP53-209ENST00000514665 A0A0G2JQZ4 141 aa8.38□□□□□ -1.07
USP53-209ENST00000514665 A0A1W2PNN7 141 aa8.38□□□□□ -1.07
USP53-209ENST00000514665 IGKV2D-30A0A075B6S6 120 aa8.38□□□□□ -1.07
USP53-209ENST00000514665 IGKV2-30P06310 120 aa8.38□□□□□ -1.07
USP53-209ENST00000514665 K7EQZ3 153 aa8.37□□□□□ -1.07
USP53-209ENST00000514665 KCNQ1DNQ9H478 68 aa8.37□□□□□ -1.07
USP53-209ENST00000514665 NBDYA0A0U1RRE5 68 aa8.37□□□□□ -1.07
USP53-209ENST00000514665 FAM104AQ969W3 186 aa8.36□□□□□ -1.07
USP53-209ENST00000514665 CR1P17927 2039 aa8.36□□□□□ -1.07
USP53-209ENST00000514665 SPACA4Q8TDM5 124 aa8.36□□□□□ -1.07
USP53-209ENST00000514665 IGLV1-50A0A075B6I6 118 aa8.35□□□□□ -1.07
USP53-209ENST00000514665 Q8N377 158 aa8.35□□□□□ -1.07
USP53-209ENST00000514665 PRO0628Q9UI54 55 aa8.34□□□□□ -1.07
USP53-209ENST00000514665 SMG1Q96Q15 3661 aaKnown RBP8.34□□□□□ -1.07
USP53-209ENST00000514665 KRTAP1-1Q07627 177 aa8.34□□□□□ -1.08
USP53-209ENST00000514665 TRAV22A0A0B4J277 110 aa8.33□□□□□ -1.08
USP53-209ENST00000514665 LRBAP50851 2863 aa8.33□□□□□ -1.08
USP53-209ENST00000514665 BSNQ9UPA5 3926 aa8.31□□□□□ -1.08
USP53-209ENST00000514665 K7EIL1 84 aa8.31□□□□□ -1.08
USP53-209ENST00000514665 RTL8CO15255 209 aa8.31□□□□□ -1.08
USP53-209ENST00000514665 SPAG11AQ6PDA7 123 aa8.31□□□□□ -1.08
USP53-209ENST00000514665 BAHCC1Q9P281 2608 aa8.31□□□□□ -1.08
USP53-209ENST00000514665 CASC10Q5T4H9 136 aa8.3□□□□□ -1.08
USP53-209ENST00000514665 TP53AIP1Q9HCN2 124 aa8.3□□□□□ -1.08
USP53-209ENST00000514665 LIMD2Q9BT23 127 aa8.3□□□□□ -1.08
USP53-209ENST00000514665 IGFL1Q6UW32 110 aa8.29□□□□□ -1.08
USP53-209ENST00000514665 STAB2Q8WWQ8 2551 aa8.29□□□□□ -1.08
USP53-209ENST00000514665 ERC2-IT1O76042 136 aa8.27□□□□□ -1.09
USP53-209ENST00000514665 UTP20O75691 2785 aaKnown RBP8.27□□□□□ -1.09
USP53-209ENST00000514665 KLKP1Q107X0 134 aa8.26□□□□□ -1.09
USP53-209ENST00000514665 A8MWP4 228 aa8.24□□□□□ -1.09
USP53-209ENST00000514665 H7BZZ5 65 aa8.24□□□□□ -1.09
USP53-209ENST00000514665 ITPR2Q14571 2701 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms