RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 V9GYS6 101 aa-0.36□□□□□ -2.47
NUP54-215ENST00000514313 USP9XQ93008 2570 aaPredicted RBP-0.36□□□□□ -2.47
NUP54-215ENST00000514313 DSPP15924 2871 aaKnown RBP-0.36□□□□□ -2.47
NUP54-215ENST00000514313 SVEP1Q4LDE5 3571 aa-0.36□□□□□ -2.47
NUP54-215ENST00000514313 M0R2T5 61 aa-0.37□□□□□ -2.47
NUP54-215ENST00000514313 NMSQ5H8A3 153 aa-0.37□□□□□ -2.47
NUP54-215ENST00000514313 KIF20BQ96Q89 1820 aa-0.37□□□□□ -2.47
NUP54-215ENST00000514313 DNAH6Q9C0G6 4158 aa-0.38□□□□□ -2.47
NUP54-215ENST00000514313 CNOT1A5YKK6 2376 aaKnown RBP-0.38□□□□□ -2.47
NUP54-215ENST00000514313 FAT3Q8TDW7 4589 aa-0.38□□□□□ -2.47
NUP54-215ENST00000514313 NIPBLQ6KC79 2804 aaeCLIP-0.38□□□□□ -2.47
NUP54-215ENST00000514313 SONP18583 2426 aaKnown RBP-0.38□□□□□ -2.47
NUP54-215ENST00000514313 CEP162Q5TB80 1403 aa-0.38□□□□□ -2.47
NUP54-215ENST00000514313 PRRC2CQ9Y520 2896 aaKnown RBP-0.39□□□□□ -2.47
NUP54-215ENST00000514313 WNK1Q9H4A3 2382 aa-0.39□□□□□ -2.47
NUP54-215ENST00000514313 TNRC18O15417 2968 aaPredicted RBP-0.39□□□□□ -2.47
NUP54-215ENST00000514313 SPRR2EP22531 72 aa-0.39□□□□□ -2.47
NUP54-215ENST00000514313 ANK3Q12955 4377 aaKnown RBP-0.39□□□□□ -2.47
NUP54-215ENST00000514313 TACC2O95359 2948 aa-0.39□□□□□ -2.47
NUP54-215ENST00000514313 DNAH3Q8TD57 4116 aa-0.39□□□□□ -2.47
NUP54-215ENST00000514313 PKHD1P08F94 4074 aa-0.4□□□□□ -2.47
NUP54-215ENST00000514313 MYO18BQ8IUG5 2567 aa-0.4□□□□□ -2.47
NUP54-215ENST00000514313 MUC17Q685J3 4493 aa-0.4□□□□□ -2.47
NUP54-215ENST00000514313 VPS13DQ5THJ4 4388 aa-0.4□□□□□ -2.47
NUP54-215ENST00000514313 PLECQ15149 4684 aaKnown RBP-0.4□□□□□ -2.47
NUP54-215ENST00000514313 CHD8Q9HCK8 2581 aa-0.41□□□□□ -2.47
NUP54-215ENST00000514313 DYNC1H1Q14204 4646 aaKnown RBP-0.41□□□□□ -2.47
NUP54-215ENST00000514313 NEXMIFQ5QGS0 1516 aa-0.41□□□□□ -2.48
NUP54-215ENST00000514313 DEFA5Q01523 94 aa-0.41□□□□□ -2.48
NUP54-215ENST00000514313 KRTAP6-2Q3LI66 62 aa-0.41□□□□□ -2.48
NUP54-215ENST00000514313 SPTBN4Q9H254 2564 aa-0.41□□□□□ -2.48
NUP54-215ENST00000514313 DNAH2Q9P225 4427 aa-0.41□□□□□ -2.48
NUP54-215ENST00000514313 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.41□□□□□ -2.48
NUP54-215ENST00000514313 WDR87Q6ZQQ6 2873 aa-0.42□□□□□ -2.48
NUP54-215ENST00000514313 APOBP04114 4563 aaKnown RBP-0.42□□□□□ -2.48
NUP54-215ENST00000514313 CCL22O00626 93 aa-0.42□□□□□ -2.48
NUP54-215ENST00000514313 DEFB135Q30KP9 77 aa-0.42□□□□□ -2.48
NUP54-215ENST00000514313 LELP1Q5T871 98 aa-0.42□□□□□ -2.48
NUP54-215ENST00000514313 COL14A1Q05707 1796 aaKnown RBP-0.42□□□□□ -2.48
NUP54-215ENST00000514313 CELSR3Q9NYQ7 3312 aa-0.43□□□□□ -2.48
NUP54-215ENST00000514313 H0YGG7 62 aa-0.43□□□□□ -2.48
NUP54-215ENST00000514313 MYO3AQ8NEV4 1616 aa-0.43□□□□□ -2.48
NUP54-215ENST00000514313 PKHD1L1Q86WI1 4243 aa-0.43□□□□□ -2.48
NUP54-215ENST00000514313 LAMA1P25391 3075 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 UBR1Q8IWV7 1749 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 CLIP1P30622 1438 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 PCNX1Q96RV3 2341 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 IQCF6A8MYZ5 107 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 K7EP34 96 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 PLGLAQ15195 96 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 SPRR2FQ96RM1 72 aa-0.44□□□□□ -2.48
NUP54-215ENST00000514313 AKAP9Q99996 3911 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 PRKDCP78527 4128 aaKnown RBP-0.45□□□□□ -2.48
NUP54-215ENST00000514313 TTC37Q6PGP7 1564 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 RGPD4Q7Z3J3 1758 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 TEX15Q9BXT5 2789 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 HEPN1Q6WQI6 88 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 PKD1L3Q7Z443 1732 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 SACSQ9NZJ4 4579 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 LAMA3Q16787 3333 aa-0.45□□□□□ -2.48
NUP54-215ENST00000514313 ANKRD11Q6UB99 2663 aaPredicted RBP-0.45□□□□□ -2.48
NUP54-215ENST00000514313 SRCAPQ6ZRS2 3230 aa-0.46□□□□□ -2.48
NUP54-215ENST00000514313 A0A1B0GUT8 65 aa-0.46□□□□□ -2.48
NUP54-215ENST00000514313 S100A16Q96FQ6 103 aaKnown RBP-0.46□□□□□ -2.48
NUP54-215ENST00000514313 A0A0C4DFX4 3053 aa-0.46□□□□□ -2.48
NUP54-215ENST00000514313 CUBNO60494 3623 aa-0.46□□□□□ -2.48
NUP54-215ENST00000514313 AKAP13Q12802 2813 aa-0.46□□□□□ -2.48
NUP54-215ENST00000514313 CMYA5Q8N3K9 4069 aa-0.47□□□□□ -2.48
NUP54-215ENST00000514313 MAGI2Q86UL8 1455 aa-0.47□□□□□ -2.48
NUP54-215ENST00000514313 H3BNG1 76 aa-0.47□□□□□ -2.48
NUP54-215ENST00000514313 COX7BP24311 80 aa-0.47□□□□□ -2.48
NUP54-215ENST00000514313 PKD1P98161 4303 aa-0.47□□□□□ -2.49
NUP54-215ENST00000514313 KALRNO60229 2985 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 ITPR1Q14643 2758 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 DNAH5Q8TE73 4624 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 PLIN4Q96Q06 1357 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 ANKRD50Q9ULJ7 1429 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 DNAH1Q9P2D7 4330 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 SPG11Q96JI7 2443 aa-0.48□□□□□ -2.49
NUP54-215ENST00000514313 RIF1Q5UIP0 2472 aaKnown RBP-0.48□□□□□ -2.49
NUP54-215ENST00000514313 DNAH9Q9NYC9 4486 aa-0.49□□□□□ -2.49
NUP54-215ENST00000514313 MGAM2Q2M2H8 2515 aa-0.49□□□□□ -2.49
NUP54-215ENST00000514313 PVALEFA0A1B0GWK0 134 aa-0.49□□□□□ -2.49
NUP54-215ENST00000514313 LYSTQ99698 3801 aa-0.49□□□□□ -2.49
NUP54-215ENST00000514313 RGPD3A6NKT7 1758 aaPredicted RBP-0.5□□□□□ -2.49
NUP54-215ENST00000514313 UBR3Q6ZT12 1888 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 LRRK2Q5S007 2527 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 MT1AP04731 61 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 C9orf62Q8N4C0 152 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 CDKN2A-AS1Q9UH64 79 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 ALKQ9UM73 1620 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 RGPD2P0DJD1 1756 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 VPS13BQ7Z7G8 4022 aa-0.5□□□□□ -2.49
NUP54-215ENST00000514313 UTP20O75691 2785 aaKnown RBP-0.51□□□□□ -2.49
NUP54-215ENST00000514313 NBEAQ8NFP9 2946 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 DMXL1Q9Y485 3027 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 RELNP78509 3460 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 TRIOO75962 3097 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 CYB5AP00167 134 aa-0.51□□□□□ -2.49
NUP54-215ENST00000514313 ATP7BP35670 1465 aa-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms