RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PKD1P98161 4303 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 HSBP1O75506 76 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 PFN2P35080 140 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 UBE2AP49459 152 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 MRPL55Q7Z7F7 128 aaKnown RBP2.08□□□□□ -2.08
NUP54-212ENST00000513248 ZNF625Q96I27 306 aaPredicted RBP2.08□□□□□ -2.08
NUP54-212ENST00000513248 LINC01600Q96MT4 127 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 C22orf24Q9Y442 160 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 FAT1Q14517 4588 aa2.08□□□□□ -2.08
NUP54-212ENST00000513248 DNAH5Q8TE73 4624 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 LRP1BQ9NZR2 4599 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 NUPR1O60356 82 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 RPL28P46779 137 aaKnown RBP2.07□□□□□ -2.08
NUP54-212ENST00000513248 LINC00158P58513 81 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 MEIG1Q5JSS6 88 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 FAM19A3Q7Z5A8 133 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 C18orf32Q8TCD1 76 aa2.07□□□□□ -2.08
NUP54-212ENST00000513248 CHTOPQ9Y3Y2 248 aaKnown RBP2.07□□□□□ -2.08
NUP54-212ENST00000513248 FSIP2Q5CZC0 6907 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 IGKV2-28A0A075B6P5 120 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 IGKV2D-28P01615 120 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 MT1HL1P0DM35 61 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 IGLC3P0DOY3 106 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 ZNF22P17026 224 aaPredicted RBP2.06□□□□□ -2.08
NUP54-212ENST00000513248 S100A12P80511 92 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 C10orf91Q5T1B1 145 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 SFTA2Q6UW10 78 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 CBLN2Q8IUK8 224 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 IFI27L1Q96BM0 104 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 CHCHD1Q96BP2 118 aaKnown RBP2.06□□□□□ -2.08
NUP54-212ENST00000513248 ERG28Q9UKR5 140 aa2.06□□□□□ -2.08
NUP54-212ENST00000513248 IGLV1-50A0A075B6I6 118 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 LINC01546A6NGU7 62 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 C11orf86A6NJI1 115 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 BCE1O60756 84 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 LEPROTL1O95214 131 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 TRGC2P03986 189 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 FABP4P15090 132 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 DEFB116Q30KQ4 102 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 FAM19A1Q7Z5A9 133 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 PCP2Q8IVA1 136 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 FAM19A2Q8N3H0 131 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 MAP1LC3CQ9BXW4 147 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 TP73-AS1Q9UF72 201 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 HSPB8Q9UJY1 196 aa2.05□□□□□ -2.08
NUP54-212ENST00000513248 IGKV2D-26A0A0A0MRZ7 120 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 TRAV12-1A0A0B4J245 112 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 MYMXA0A1B0GTQ4 84 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 TMEM223A0PJW6 202 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 LINC00587B1AMM8 73 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 NCR3O14931 201 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 SCO1O75880 301 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 TSPAN13O95857 204 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 SMIM13P0DJ93 91 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 CRYGAP11844 174 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 LGALS3P17931 250 aaKnown RBP2.04□□□□□ -2.08
NUP54-212ENST00000513248 MOBPQ13875 183 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 COX17Q14061 63 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 MIEN1Q9BRT3 115 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 SND1-IT1Q9HBX3 110 aa2.04□□□□□ -2.08
NUP54-212ENST00000513248 ETDCA0A1B0GVM5 59 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 M0R378 163 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 DPM2O94777 84 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 PLNP26678 52 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 PRLHP81277 87 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 BOD1L2Q8IYS8 172 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 SLC7A5P1Q8MH63 180 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 PLEKHB2Q96CS7 222 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 HIGD2AQ9BW72 106 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 CRCT1Q9UGL9 99 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 NDUFA12Q9UI09 145 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 LRP2P98164 4655 aa2.03□□□□□ -2.08
NUP54-212ENST00000513248 TMEM238C9JI98 176 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 LEPROTO15243 131 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 IGKCP01834 107 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 HINT1P49773 126 aaPredicted RBP2.02□□□□□ -2.09
NUP54-212ENST00000513248 NPC2P61916 151 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 S100A7L2Q5SY68 101 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 Q5W150 140 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 MIR7-3HGQ8N6C7 128 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 PMCHL2Q9BQD1 86 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 TMEM126AQ9H061 195 aa2.02□□□□□ -2.09
NUP54-212ENST00000513248 ZNF706Q9Y5V0 76 aaPredicted RBP2.02□□□□□ -2.09
NUP54-212ENST00000513248 VPS13BQ7Z7G8 4022 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 A0A1B0GVX0 72 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 C20orf202A1L168 122 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 J3QQQ9 107 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 SEC61GP60059 68 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 COA6Q5JTJ3 125 aaKnown RBP2.01□□□□□ -2.09
NUP54-212ENST00000513248 DAND5Q8N907 189 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 LINC00304Q8N9R0 145 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 OR13C6PQ8NH95 151 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 YPEL4Q96NS1 127 aa2.01□□□□□ -2.09
NUP54-212ENST00000513248 DDTP30046 118 aa2□□□□□ -2.09
NUP54-212ENST00000513248 KRTDAPP60985 99 aa2□□□□□ -2.09
NUP54-212ENST00000513248 FAM229BQ4G0N7 80 aa2□□□□□ -2.09
NUP54-212ENST00000513248 LINC00483Q53H64 154 aa2□□□□□ -2.09
NUP54-212ENST00000513248 CBY1Q9Y3M2 126 aa2□□□□□ -2.09
NUP54-212ENST00000513248 TRBV10-3A0A0K0K1G6 114 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms