RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 DMBT1Q9UGM3 2413 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-210ENST00000509454 GHRHP01286 108 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 C14orf144Q96I85 54 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 KCNQ1DNQ9H478 68 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 TRAV23DV6A0A075B6W5 121 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 LINC00518Q8N0U6 118 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 HIGD2AQ9BW72 106 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 MYCBP2O75592 4640 aa6.91□□□□□ -1.3
LIMCH1-210ENST00000509454 IGLV6-57P01721 117 aa6.9□□□□□ -1.31
LIMCH1-210ENST00000509454 PYY3Q5JQD4 70 aa6.9□□□□□ -1.31
LIMCH1-210ENST00000509454 LINC01600Q96MT4 127 aa6.9□□□□□ -1.31
LIMCH1-210ENST00000509454 CBY1Q9Y3M2 126 aa6.9□□□□□ -1.31
LIMCH1-210ENST00000509454 SLC25A34Q6PIV7 304 aa6.89□□□□□ -1.31
LIMCH1-210ENST00000509454 KRTAP13-1Q8IUC0 172 aa6.89□□□□□ -1.31
LIMCH1-210ENST00000509454 HIST1H4GQ99525 98 aa6.89□□□□□ -1.31
LIMCH1-210ENST00000509454 A6NDN8 102 aa6.88□□□□□ -1.31
LIMCH1-210ENST00000509454 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
LIMCH1-210ENST00000509454 ZNF73O43830 326 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-210ENST00000509454 HINT1P49773 126 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-210ENST00000509454 DLEU1O43261 78 aa6.86□□□□□ -1.31
LIMCH1-210ENST00000509454 SPRR1AP35321 89 aa6.86□□□□□ -1.31
LIMCH1-210ENST00000509454 PRR26Q8N8Z3 221 aa6.86□□□□□ -1.31
LIMCH1-210ENST00000509454 PPDPFQ9H3Y8 114 aa6.86□□□□□ -1.31
LIMCH1-210ENST00000509454 LRP1Q07954 4544 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-210ENST00000509454 B5MCH6 92 aa6.85□□□□□ -1.31
LIMCH1-210ENST00000509454 KRTAP1-4P0C5Y4 121 aa6.85□□□□□ -1.31
LIMCH1-210ENST00000509454 MT1HL1P0DM35 61 aa6.85□□□□□ -1.31
LIMCH1-210ENST00000509454 TRAV13-2A0A0B4J235 113 aa6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 A4D1N5 150 aa6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 KRTAP4-16G5E9R7 235 aaPredicted RBP6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 SMCR5Q8TEV8 140 aa6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 C12orf57Q99622 126 aa6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 ANAPC11Q9NYG5 84 aa6.84□□□□□ -1.31
LIMCH1-210ENST00000509454 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.32
LIMCH1-210ENST00000509454 Q6ZRX8 168 aa6.83□□□□□ -1.32
LIMCH1-210ENST00000509454 ZNF706Q9Y5V0 76 aaPredicted RBP6.83□□□□□ -1.32
LIMCH1-210ENST00000509454 CRYGAP11844 174 aa6.82□□□□□ -1.32
LIMCH1-210ENST00000509454 RPL13AP40429 203 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-210ENST00000509454 C6orf99Q4VX62 202 aa6.82□□□□□ -1.32
LIMCH1-210ENST00000509454 HIGD1BQ9P298 99 aa6.82□□□□□ -1.32
LIMCH1-210ENST00000509454 COX7BP24311 80 aa6.81□□□□□ -1.32
LIMCH1-210ENST00000509454 KRTAP10-8P60410 259 aa6.81□□□□□ -1.32
LIMCH1-210ENST00000509454 C2orf91Q6ZV80 131 aa6.81□□□□□ -1.32
LIMCH1-210ENST00000509454 SPRR4Q96PI1 79 aa6.8□□□□□ -1.32
LIMCH1-210ENST00000509454 Q9BRP9 147 aa6.8□□□□□ -1.32
LIMCH1-210ENST00000509454 A0A087X002 238 aa6.79□□□□□ -1.32
LIMCH1-210ENST00000509454 ERC2-IT1O76042 136 aa6.79□□□□□ -1.32
LIMCH1-210ENST00000509454 GAGE2AQ6NT46 116 aa6.79□□□□□ -1.32
LIMCH1-210ENST00000509454 TYMSOSQ8TAI1 123 aa6.79□□□□□ -1.32
LIMCH1-210ENST00000509454 RAB37Q96AX2 223 aa6.79□□□□□ -1.32
LIMCH1-210ENST00000509454 H7C2G1 150 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 TAL2Q16559 108 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 FAM229BQ4G0N7 80 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 SMIM11BQ8TCY0 68 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 DHRS4-AS1Q9P1J3 65 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 UQCR10Q9UDW1 63 aa6.78□□□□□ -1.32
LIMCH1-210ENST00000509454 ELOF1P60002 83 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-210ENST00000509454 CEND1Q8N111 149 aa6.77□□□□□ -1.33
LIMCH1-210ENST00000509454 TMEM238LA0A1B0GVL6 79 aa6.76□□□□□ -1.33
LIMCH1-210ENST00000509454 A0A1B0GWB2 263 aa6.76□□□□□ -1.33
LIMCH1-210ENST00000509454 VAMP3Q15836 100 aa6.76□□□□□ -1.33
LIMCH1-210ENST00000509454 SMIM6P0DI80 62 aa6.76□□□□□ -1.33
LIMCH1-210ENST00000509454 PRO1933Q9H354 126 aa6.76□□□□□ -1.33
LIMCH1-210ENST00000509454 TRBV7-6A0A0J9YX20 115 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 CFC1BP0CG36 223 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 CFC1P0CG37 223 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 HSD52Q0P140 79 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 Q1RN00 199 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 KRTAP13-2Q52LG2 175 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 ST20-AS1Q8NBB2 130 aa6.75□□□□□ -1.33
LIMCH1-210ENST00000509454 C3orf22Q8N5N4 141 aa6.74□□□□□ -1.33
LIMCH1-210ENST00000509454 KRTAP4-8Q9BYQ9 185 aa6.74□□□□□ -1.33
LIMCH1-210ENST00000509454 IGLV9-49A0A0B4J1Y8 123 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 A0A0B4J2C4 111 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 SLC25A20O43772 301 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 FXYD2P54710 66 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 DEFB105AQ8NG35 78 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 SVIPQ8NHG7 77 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 HERC1Q15751 4861 aa6.73□□□□□ -1.33
LIMCH1-210ENST00000509454 TSPAN13O95857 204 aa6.72□□□□□ -1.33
LIMCH1-210ENST00000509454 C21orf62-AS1Q17RA5 79 aa6.72□□□□□ -1.33
LIMCH1-210ENST00000509454 NHP2Q9NX24 153 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-210ENST00000509454 LOC105371267A0A1B0GV96 52 aa6.71□□□□□ -1.33
LIMCH1-210ENST00000509454 LINC00483Q53H64 154 aa6.71□□□□□ -1.33
LIMCH1-210ENST00000509454 C9orf153Q5TBE3 101 aa6.71□□□□□ -1.34
LIMCH1-210ENST00000509454 LINC00304Q8N9R0 145 aa6.71□□□□□ -1.34
LIMCH1-210ENST00000509454 PRO1854Q9UHT4 67 aa6.71□□□□□ -1.34
LIMCH1-210ENST00000509454 TNXBP22105 4242 aa6.7□□□□□ -1.34
LIMCH1-210ENST00000509454 MOBPQ13875 183 aa6.7□□□□□ -1.34
LIMCH1-210ENST00000509454 BVES-AS1Q5T3Y7 98 aa6.7□□□□□ -1.34
LIMCH1-210ENST00000509454 hADV29S1A0JD25 119 aa6.68□□□□□ -1.34
LIMCH1-210ENST00000509454 K7ERJ3 54 aa6.68□□□□□ -1.34
LIMCH1-210ENST00000509454 LINC00575Q6W349 94 aa6.68□□□□□ -1.34
LIMCH1-210ENST00000509454 Q8NBF4 154 aa6.68□□□□□ -1.34
LIMCH1-210ENST00000509454 LAMTOR3Q9UHA4 124 aa6.68□□□□□ -1.34
LIMCH1-210ENST00000509454 TEX49A0A1B0GTD5 131 aa6.66□□□□□ -1.34
LIMCH1-210ENST00000509454 TSTD3H0UI37 97 aa6.66□□□□□ -1.34
LIMCH1-210ENST00000509454 SNCGO76070 127 aa6.66□□□□□ -1.34
LIMCH1-210ENST00000509454 PSMB2P49721 201 aa6.66□□□□□ -1.34
LIMCH1-210ENST00000509454 CTAG1AP78358 180 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms