RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HSPG2P98160 4391 aa5.39□□□□□ -1.55
SCN1A-207ENST00000507401 A0A087WTM6 91 aa5.38□□□□□ -1.55
SCN1A-207ENST00000507401 IGHV3-73A0A0B4J1V6 119 aa5.38□□□□□ -1.55
SCN1A-207ENST00000507401 IBA57-AS1B1ANH7 110 aa5.38□□□□□ -1.55
SCN1A-207ENST00000507401 USP17L23D6RBM5 183 aa5.38□□□□□ -1.55
SCN1A-207ENST00000507401 ADAMTSL4-AS1Q5T5F5 129 aa5.37□□□□□ -1.55
SCN1A-207ENST00000507401 Q6ZSN1 163 aa5.37□□□□□ -1.55
SCN1A-207ENST00000507401 JPT2Q9H910 190 aa5.37□□□□□ -1.55
SCN1A-207ENST00000507401 LAMTOR3Q9UHA4 124 aa5.37□□□□□ -1.55
SCN1A-207ENST00000507401 APOBP04114 4563 aaKnown RBP5.37□□□□□ -1.55
SCN1A-207ENST00000507401 ABCA13Q86UQ4 5058 aa5.36□□□□□ -1.55
SCN1A-207ENST00000507401 SMIM26A0A096LP01 95 aa5.36□□□□□ -1.55
SCN1A-207ENST00000507401 CRPP02741 224 aa5.36□□□□□ -1.55
SCN1A-207ENST00000507401 UBE2D4Q9Y2X8 147 aa5.36□□□□□ -1.55
SCN1A-207ENST00000507401 TRBV10-1A0A0K0K1A3 114 aa5.35□□□□□ -1.55
SCN1A-207ENST00000507401 FAM236DA0A1B0GTK5 79 aa5.35□□□□□ -1.55
SCN1A-207ENST00000507401 LRCOL1A6NCL2 159 aa5.35□□□□□ -1.55
SCN1A-207ENST00000507401 FAM236CP0DP71 79 aa5.35□□□□□ -1.55
SCN1A-207ENST00000507401 TRAV7A0A075B6U4 112 aa5.34□□□□□ -1.55
SCN1A-207ENST00000507401 PSCAO43653 123 aa5.34□□□□□ -1.55
SCN1A-207ENST00000507401 PDE6GP18545 87 aa5.34□□□□□ -1.55
SCN1A-207ENST00000507401 Q5XG85 94 aa5.34□□□□□ -1.55
SCN1A-207ENST00000507401 Q9UF83 564 aa5.34□□□□□ -1.55
SCN1A-207ENST00000507401 A0A087WWL8 130 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 SLPIP03973 132 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 CCKP06307 115 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 KLKP1Q107X0 134 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 DGAT2L7PQ6IED9 249 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 TMEM243Q9BU79 118 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 CHCHD7Q9BUK0 85 aa5.33□□□□□ -1.56
SCN1A-207ENST00000507401 IGHV3-64A0A075B6Q5 118 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 PFN2P35080 140 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 KRTAP10-1P60331 282 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 RPL36AP83881 106 aaKnown RBP5.32□□□□□ -1.56
SCN1A-207ENST00000507401 FAM74A4Q5TZK3 123 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 Q8N814 137 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 RPL36ALQ969Q0 106 aaKnown RBP5.32□□□□□ -1.56
SCN1A-207ENST00000507401 ZNF625Q96I27 306 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-207ENST00000507401 UBL5Q9BZL1 73 aa5.32□□□□□ -1.56
SCN1A-207ENST00000507401 TMEM256-PLSCR3K7ERE1 68 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 ERC2-IT1O76042 136 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 LINC01561Q8N1V8 128 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 LINC00167Q96N53 147 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 Q9HAA7 133 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 ORMDL1Q9P0S3 153 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 C22orf24Q9Y442 160 aa5.31□□□□□ -1.56
SCN1A-207ENST00000507401 IGLV5-52A0A0A0MRZ9 124 aa5.3□□□□□ -1.56
SCN1A-207ENST00000507401 FUSP35637 526 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCN1A-207ENST00000507401 RMI2Q96E14 147 aa5.3□□□□□ -1.56
SCN1A-207ENST00000507401 DSCR8Q96T75 97 aa5.3□□□□□ -1.56
SCN1A-207ENST00000507401 OPRPNQ99935 248 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-207ENST00000507401 TRBV6-8A0A0A6YYG3 113 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 C4orf26Q17RF5 130 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 HRCT1Q6UXD1 115 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 FAM104AQ969W3 186 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 LINC00846Q9NV44 126 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 CDKN2A-AS1Q9UH64 79 aa5.29□□□□□ -1.56
SCN1A-207ENST00000507401 SMIM1B2RUZ4 78 aa5.28□□□□□ -1.56
SCN1A-207ENST00000507401 XCL1P47992 114 aa5.28□□□□□ -1.56
SCN1A-207ENST00000507401 KLK12Q9UKR0 248 aa5.28□□□□□ -1.56
SCN1A-207ENST00000507401 CXCL6P80162 114 aa5.27□□□□□ -1.57
SCN1A-207ENST00000507401 FAT1Q14517 4588 aa5.27□□□□□ -1.57
SCN1A-207ENST00000507401 DNAH8Q96JB1 4490 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 SRRM2Q9UQ35 2752 aaKnown RBP5.26□□□□□ -1.57
SCN1A-207ENST00000507401 IGKV3D-7A0A0C4DH55 119 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 LINC00242Q5T6M2 205 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 SND1-IT1Q9HBX3 110 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 C14orf132Q9NPU4 83 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 V9GYY9 64 aa5.26□□□□□ -1.57
SCN1A-207ENST00000507401 IGKV2D-24A0A075B6R9 120 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 LOC110117498A0A087WWA1 95 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 H7BZZ5 65 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 OXTP01178 125 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 ENHOQ6UWT2 76 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 NTM-AS1Q6ZSK4 140 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 FAM218AQ96MZ4 157 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 C1orf43Q9BWL3 253 aa5.25□□□□□ -1.57
SCN1A-207ENST00000507401 SMR3BP02814 79 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-207ENST00000507401 C14orf177Q52M58 125 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 Q5VSD8 79 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 SOSTDC1Q6X4U4 206 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 Q6ZSA8 131 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 C20orf197Q8N268 126 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 SMIM11BQ8TCY0 68 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 PRR34Q9NV39 138 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 FAM30AQ9NZY2 134 aa5.24□□□□□ -1.57
SCN1A-207ENST00000507401 A0A1B0GUV1 79 aa5.23□□□□□ -1.57
SCN1A-207ENST00000507401 LECT2O14960 151 aa5.23□□□□□ -1.57
SCN1A-207ENST00000507401 ANGP03950 147 aaKnown RBP5.23□□□□□ -1.57
SCN1A-207ENST00000507401 COX7B2Q8TF08 81 aa5.23□□□□□ -1.57
SCN1A-207ENST00000507401 VPS13BQ7Z7G8 4022 aa5.23□□□□□ -1.57
SCN1A-207ENST00000507401 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-207ENST00000507401 COX17Q14061 63 aa5.22□□□□□ -1.57
SCN1A-207ENST00000507401 LINC00337Q8N6G1 96 aa5.22□□□□□ -1.57
SCN1A-207ENST00000507401 CDC42SE2Q9NRR3 84 aa5.22□□□□□ -1.57
SCN1A-207ENST00000507401 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-207ENST00000507401 A0A087WYN8 130 aa5.21□□□□□ -1.58
SCN1A-207ENST00000507401 IGKV2-29A2NJV5 120 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-207ENST00000507401 C1orf195Q5TG92 126 aa5.21□□□□□ -1.58
SCN1A-207ENST00000507401 LINC00269Q8N2A0 174 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms