RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TM2D3Q9BRN9 247 aa7.07□□□□□ -1.28
LIMCH1-205ENST00000503057 FASNP49327 2511 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-205ENST00000503057 WIPF1O43516 503 aa7.06□□□□□ -1.28
LIMCH1-205ENST00000503057 ERC2-IT1O76042 136 aa7.06□□□□□ -1.28
LIMCH1-205ENST00000503057 Q8N377 158 aa7.04□□□□□ -1.28
LIMCH1-205ENST00000503057 C1orf64Q8NEQ6 169 aa7.04□□□□□ -1.28
LIMCH1-205ENST00000503057 RTL8CO15255 209 aa7.04□□□□□ -1.28
LIMCH1-205ENST00000503057 TP53AIP1Q9HCN2 124 aa7.04□□□□□ -1.28
LIMCH1-205ENST00000503057 CHTF8P0CG12 524 aa7.03□□□□□ -1.28
LIMCH1-205ENST00000503057 TNRC18O15417 2968 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-205ENST00000503057 H3BPC8 53 aa7.03□□□□□ -1.28
LIMCH1-205ENST00000503057 C1orf195Q5TG92 126 aa7.02□□□□□ -1.29
LIMCH1-205ENST00000503057 FLNAP21333 2647 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-205ENST00000503057 MOBPQ13875 183 aa7.02□□□□□ -1.29
LIMCH1-205ENST00000503057 PCOTHQ58A44 107 aa7.02□□□□□ -1.29
LIMCH1-205ENST00000503057 CELSR3Q9NYQ7 3312 aa7.02□□□□□ -1.29
LIMCH1-205ENST00000503057 IGLV5-37A0A075B6J1 123 aa7.01□□□□□ -1.29
LIMCH1-205ENST00000503057 K7ERS5 55 aa7.01□□□□□ -1.29
LIMCH1-205ENST00000503057 LIMD2Q9BT23 127 aa7□□□□□ -1.29
LIMCH1-205ENST00000503057 K7EQZ3 153 aa6.99□□□□□ -1.29
LIMCH1-205ENST00000503057 IGFL1Q6UW32 110 aa6.99□□□□□ -1.29
LIMCH1-205ENST00000503057 KLKP1Q107X0 134 aa6.99□□□□□ -1.29
LIMCH1-205ENST00000503057 DSPP15924 2871 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-205ENST00000503057 A8MWP4 228 aa6.98□□□□□ -1.29
LIMCH1-205ENST00000503057 CNBPP62633 177 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-205ENST00000503057 RPL37AP61513 92 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-205ENST00000503057 CASC10Q5T4H9 136 aa6.97□□□□□ -1.29
LIMCH1-205ENST00000503057 ITPR3Q14573 2671 aa6.96□□□□□ -1.3
LIMCH1-205ENST00000503057 PSPHP1O15172 72 aa6.96□□□□□ -1.3
LIMCH1-205ENST00000503057 IGLV5-48A0A075B6I7 105 aa6.95□□□□□ -1.3
LIMCH1-205ENST00000503057 TRAV22A0A0B4J277 110 aa6.95□□□□□ -1.3
LIMCH1-205ENST00000503057 C9orf163Q8N9P6 203 aa6.95□□□□□ -1.3
LIMCH1-205ENST00000503057 APLNQ9ULZ1 77 aa6.94□□□□□ -1.3
LIMCH1-205ENST00000503057 C4orf26Q17RF5 130 aa6.94□□□□□ -1.3
LIMCH1-205ENST00000503057 PRO0628Q9UI54 55 aa6.94□□□□□ -1.3
LIMCH1-205ENST00000503057 FRYQ5TBA9 3013 aa6.94□□□□□ -1.3
LIMCH1-205ENST00000503057 F8P00451 2351 aa6.93□□□□□ -1.3
LIMCH1-205ENST00000503057 EYSQ5T1H1 3165 aa6.93□□□□□ -1.3
LIMCH1-205ENST00000503057 PMAIP1Q13794 54 aa6.93□□□□□ -1.3
LIMCH1-205ENST00000503057 COL6A3P12111 3177 aa6.92□□□□□ -1.3
LIMCH1-205ENST00000503057 A0A1W2PNN7 141 aa6.92□□□□□ -1.3
LIMCH1-205ENST00000503057 A0A1W2PNM2 257 aa6.92□□□□□ -1.3
LIMCH1-205ENST00000503057 Q8NDZ9 215 aa6.91□□□□□ -1.3
LIMCH1-205ENST00000503057 RETNLBQ9BQ08 111 aa6.91□□□□□ -1.3
LIMCH1-205ENST00000503057 H7BZZ5 65 aa6.91□□□□□ -1.3
LIMCH1-205ENST00000503057 USP34Q70CQ2 3546 aa6.9□□□□□ -1.3
LIMCH1-205ENST00000503057 PRR15Q8IV56 129 aa6.9□□□□□ -1.3
LIMCH1-205ENST00000503057 HECTD1Q9ULT8 2610 aa6.9□□□□□ -1.31
LIMCH1-205ENST00000503057 FRYLO94915 3013 aa6.9□□□□□ -1.31
LIMCH1-205ENST00000503057 A0A087WTM6 91 aa6.89□□□□□ -1.31
LIMCH1-205ENST00000503057 SPEGQ15772 3267 aa6.88□□□□□ -1.31
LIMCH1-205ENST00000503057 FREM2Q5SZK8 3169 aa6.87□□□□□ -1.31
LIMCH1-205ENST00000503057 USP24Q9UPU5 2620 aa6.87□□□□□ -1.31
LIMCH1-205ENST00000503057 ZNF861PO60384 105 aa6.87□□□□□ -1.31
LIMCH1-205ENST00000503057 ACYP2P14621 99 aa6.86□□□□□ -1.31
LIMCH1-205ENST00000503057 C8orf87E5RJ46 101 aa6.86□□□□□ -1.31
LIMCH1-205ENST00000503057 LINC00313P59037 77 aa6.86□□□□□ -1.31
LIMCH1-205ENST00000503057 MRPL34Q9BQ48 92 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-205ENST00000503057 A0A0G2JQZ4 141 aa6.86□□□□□ -1.31
LIMCH1-205ENST00000503057 WWC2-AS2Q96NR7 200 aa6.85□□□□□ -1.31
LIMCH1-205ENST00000503057 SPACA4Q8TDM5 124 aa6.85□□□□□ -1.31
LIMCH1-205ENST00000503057 SPRR4Q96PI1 79 aa6.85□□□□□ -1.31
LIMCH1-205ENST00000503057 LOC101927531A0A1B0GV80 90 aa6.84□□□□□ -1.31
LIMCH1-205ENST00000503057 IGSF10Q6WRI0 2623 aa6.84□□□□□ -1.31
LIMCH1-205ENST00000503057 KRTAP26-1Q6PEX3 210 aa6.84□□□□□ -1.31
LIMCH1-205ENST00000503057 C8orf17Q9NRJ1 99 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 BOD1L1Q8NFC6 3051 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 CFAP46Q8IYW2 2715 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 NBEAQ8NFP9 2946 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 CENPEQ02224 2701 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 SPRR1AP35321 89 aa6.83□□□□□ -1.32
LIMCH1-205ENST00000503057 IGKV2D-30A0A075B6S6 120 aa6.82□□□□□ -1.32
LIMCH1-205ENST00000503057 A0A1B0GVX0 72 aa6.82□□□□□ -1.32
LIMCH1-205ENST00000503057 IGKV2-30P06310 120 aa6.82□□□□□ -1.32
LIMCH1-205ENST00000503057 OCR1Q9BZK8 76 aa6.81□□□□□ -1.32
LIMCH1-205ENST00000503057 SSBP3-AS1Q7Z2R9 100 aa6.81□□□□□ -1.32
LIMCH1-205ENST00000503057 TYMSOSQ8TAI1 123 aa6.81□□□□□ -1.32
LIMCH1-205ENST00000503057 PSORS1C2Q9UIG4 136 aa6.8□□□□□ -1.32
LIMCH1-205ENST00000503057 ADGRG4Q8IZF6 3080 aa6.8□□□□□ -1.32
LIMCH1-205ENST00000503057 C7orf65Q6ZTY9 151 aa6.8□□□□□ -1.32
LIMCH1-205ENST00000503057 HELZ2Q9BYK8 2649 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 SPINK1P00995 79 aa6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 A0A1B0GU69 56 aa6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 MYO15AQ9UKN7 3530 aa6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 FAM229AH3BQW9 127 aa6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 LRBAP50851 2863 aa6.79□□□□□ -1.32
LIMCH1-205ENST00000503057 IGLV7-43P04211 117 aa6.78□□□□□ -1.32
LIMCH1-205ENST00000503057 DSCR10P59022 87 aa6.78□□□□□ -1.32
LIMCH1-205ENST00000503057 SPAG11AQ6PDA7 123 aa6.77□□□□□ -1.32
LIMCH1-205ENST00000503057 COA5Q86WW8 74 aa6.77□□□□□ -1.33
LIMCH1-205ENST00000503057 ATRQ13535 2644 aa6.76□□□□□ -1.33
LIMCH1-205ENST00000503057 DMXL2Q8TDJ6 3036 aa6.76□□□□□ -1.33
LIMCH1-205ENST00000503057 SPANXA2-OT1Q8N9U9 137 aa6.75□□□□□ -1.33
LIMCH1-205ENST00000503057 CHD6Q8TD26 2715 aa6.74□□□□□ -1.33
LIMCH1-205ENST00000503057 PLA2G1BP04054 148 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-205ENST00000503057 CYP4F30PQ9H0H9 118 aa6.74□□□□□ -1.33
LIMCH1-205ENST00000503057 ANAPC11Q9NYG5 84 aa6.73□□□□□ -1.33
LIMCH1-205ENST00000503057 ATMQ13315 3056 aa6.73□□□□□ -1.33
LIMCH1-205ENST00000503057 KALRNO60229 2985 aa6.72□□□□□ -1.33
LIMCH1-205ENST00000503057 TEX15Q9BXT5 2789 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms