RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	LINC01545	Q5VT33	79 aa		4.11	□□□□□ -1.75
VPS52-221	ENST00000495755	GAGE2A	Q6NT46	116 aa		4.11	□□□□□ -1.75
VPS52-221	ENST00000495755	PET117	Q6UWS5	81 aa		4.11	□□□□□ -1.75
VPS52-221	ENST00000495755		Q6ZRX8	168 aa		4.11	□□□□□ -1.75
VPS52-221	ENST00000495755	LITAF	Q99732	161 aa		4.11	□□□□□ -1.75
VPS52-221	ENST00000495755	TRAV23DV6	A0A075B6W5	121 aa		4.1	□□□□□ -1.75
VPS52-221	ENST00000495755	TIMM17B	O60830	172 aa		4.1	□□□□□ -1.75
VPS52-221	ENST00000495755	NPC2	P61916	151 aa		4.1	□□□□□ -1.75
VPS52-221	ENST00000495755	C4orf48	Q5BLP8	95 aa		4.1	□□□□□ -1.75
VPS52-221	ENST00000495755	CDIP1	Q9H305	208 aa		4.1	□□□□□ -1.75
VPS52-221	ENST00000495755	ZNF73	O43830	326 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	SPINK1	P00995	79 aa		4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	JOSD1	Q15040	202 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	COA6	Q5JTJ3	125 aa	Known RBP	4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	FP248	Q71RG6	208 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	SSBP3-AS1	Q7Z2R9	100 aa		4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	LINC00308	Q8TCZ7	52 aa		4.09	□□□□□ -1.75
VPS52-221	ENST00000495755	IGLV9-49	A0A0B4J1Y8	123 aa		4.08	□□□□□ -1.76
VPS52-221	ENST00000495755	C3orf79	P0CE67	100 aa		4.08	□□□□□ -1.76
VPS52-221	ENST00000495755	MOBP	Q13875	183 aa		4.08	□□□□□ -1.76
VPS52-221	ENST00000495755	SPANXC	Q9NY87	97 aa		4.08	□□□□□ -1.76
VPS52-221	ENST00000495755		A0A0U1RQV1	116 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	C5orf52	A6NGY3	159 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	ZNF815P	A8K554	130 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	KRTAP13-3	Q3SY46	172 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	ST20-AS1	Q8NBB2	130 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	TTTY13	Q9BZ97	58 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	CBY1	Q9Y3M2	126 aa		4.07	□□□□□ -1.76
VPS52-221	ENST00000495755	KRTDAP	P60985	99 aa		4.06	□□□□□ -1.76
VPS52-221	ENST00000495755	RPS29	P62273	56 aa	Known RBP	4.06	□□□□□ -1.76
VPS52-221	ENST00000495755		Q8N377	158 aa		4.06	□□□□□ -1.76
VPS52-221	ENST00000495755	OR13C6P	Q8NH95	151 aa		4.06	□□□□□ -1.76
VPS52-221	ENST00000495755	SPRR1B	P22528	89 aa		4.05	□□□□□ -1.76
VPS52-221	ENST00000495755	HINT1	P49773	126 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS52-221	ENST00000495755	SPANXD	Q9BXN6	97 aa		4.05	□□□□□ -1.76
VPS52-221	ENST00000495755	SLC25A20	O43772	301 aa		4.04	□□□□□ -1.76
VPS52-221	ENST00000495755	ANKRD39	Q53RE8	183 aa		4.04	□□□□□ -1.76
VPS52-221	ENST00000495755	LCE2A	Q5TA79	106 aa	Predicted RBP	4.04	□□□□□ -1.76
VPS52-221	ENST00000495755	LINC00518	Q8N0U6	118 aa		4.04	□□□□□ -1.76
VPS52-221	ENST00000495755	DHRS4-AS1	Q9P1J3	65 aa		4.04	□□□□□ -1.76
VPS52-221	ENST00000495755	C20orf202	A1L168	122 aa		4.03	□□□□□ -1.76
VPS52-221	ENST00000495755	ELOF1	P60002	83 aa	Known RBP	4.03	□□□□□ -1.76
VPS52-221	ENST00000495755	C6orf99	Q4VX62	202 aa		4.03	□□□□□ -1.76
VPS52-221	ENST00000495755	C9orf153	Q5TBE3	101 aa		4.03	□□□□□ -1.76
VPS52-221	ENST00000495755	TRBV7-6	A0A0J9YX20	115 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	IFITM1	P13164	125 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	COX7B	P24311	80 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	ASB16-AS1	Q495Z4	193 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	SCGB1D4	Q6XE38	83 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	PCP2	Q8IVA1	136 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	ATOH7	Q8N100	152 aa		4.02	□□□□□ -1.77
VPS52-221	ENST00000495755	AKR1D1	P51857	326 aa		4.01	□□□□□ -1.77
VPS52-221	ENST00000495755	SLC25A34	Q6PIV7	304 aa		4.01	□□□□□ -1.77
VPS52-221	ENST00000495755		Q6ZVH6	145 aa		4.01	□□□□□ -1.77
VPS52-221	ENST00000495755	MUSTN1	Q8IVN3	82 aa		4.01	□□□□□ -1.77
VPS52-221	ENST00000495755	COPS9	Q8WXC6	57 aa		4.01	□□□□□ -1.77
VPS52-221	ENST00000495755	SNRPE	P62304	92 aa	Known RBP	4	□□□□□ -1.77
VPS52-221	ENST00000495755	LAMTOR3	Q9UHA4	124 aa		4	□□□□□ -1.77
VPS52-221	ENST00000495755	TEX49	A0A1B0GTD5	131 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755		A6NDN8	102 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	LINC01547	P58512	204 aa	Predicted RBP	3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	SEC61B	P60468	96 aa	Known RBP	3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	TAL2	Q16559	108 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	XP32	Q5T750	250 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	SMIM29	Q86T20	159 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	HIST3H2BB	Q8N257	126 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	KRTAP4-1	Q9BYQ7	146 aa		3.99	□□□□□ -1.77
VPS52-221	ENST00000495755	IGLV5-48	A0A075B6I7	105 aa		3.98	□□□□□ -1.77
VPS52-221	ENST00000495755		A0A1B0GWB2	263 aa		3.98	□□□□□ -1.77
VPS52-221	ENST00000495755	HRCT1	Q6UXD1	115 aa		3.98	□□□□□ -1.77
VPS52-221	ENST00000495755	DEFB105A	Q8NG35	78 aa		3.98	□□□□□ -1.77
VPS52-221	ENST00000495755	HIST1H2BL	Q99880	126 aa		3.98	□□□□□ -1.77
VPS52-221	ENST00000495755	TRAV13-2	A0A0B4J235	113 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755		A4D1N5	150 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755	CD164	Q04900	197 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755		Q1RN00	199 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755	SMIM11B	Q8TCY0	68 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755	LIMD2	Q9BT23	127 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755	PRO1933	Q9H354	126 aa		3.97	□□□□□ -1.77
VPS52-221	ENST00000495755		Q5XG85	94 aa		3.96	□□□□□ -1.78
VPS52-221	ENST00000495755		H7C2G1	150 aa		3.95	□□□□□ -1.78
VPS52-221	ENST00000495755	S100A2	P29034	98 aa		3.95	□□□□□ -1.78
VPS52-221	ENST00000495755	KRTAP9-2	Q9BYQ4	174 aa		3.95	□□□□□ -1.78
VPS52-221	ENST00000495755		A0A0G2JQZ4	141 aa		3.94	□□□□□ -1.78
VPS52-221	ENST00000495755	S100A1	P23297	94 aa		3.94	□□□□□ -1.78
VPS52-221	ENST00000495755	NHP2	Q9NX24	153 aa	Known RBP	3.94	□□□□□ -1.78
VPS52-221	ENST00000495755	HSBP1L1	C9JCN9	74 aa		3.93	□□□□□ -1.78
VPS52-221	ENST00000495755	VAMP3	Q15836	100 aa		3.93	□□□□□ -1.78
VPS52-221	ENST00000495755	C1orf195	Q5TG92	126 aa		3.93	□□□□□ -1.78
VPS52-221	ENST00000495755	LINC00575	Q6W349	94 aa		3.93	□□□□□ -1.78
VPS52-221	ENST00000495755	C9orf92	A6NGG3	77 aa		3.92	□□□□□ -1.78
VPS52-221	ENST00000495755	S100A6	P06703	90 aa		3.92	□□□□□ -1.78
VPS52-221	ENST00000495755	LCE2C	Q5TA81	110 aa		3.91	□□□□□ -1.78
VPS52-221	ENST00000495755	hADV29S1	A0JD25	119 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755	SCGB1D1	O95968	90 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755	COX8A	P10176	69 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755	KRTAP19-2	Q3LHN2	52 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755	PCOTH	Q58A44	107 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755		Q6ZQY7	126 aa		3.9	□□□□□ -1.79
VPS52-221	ENST00000495755	IGLV8-61	A0A075B6I0	122 aa		3.89	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms